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Original Articles

Bacterial communities in the rhizosphere of Phragmites australis from an oil-polluted wetland

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Pages 360-370 | Received 10 Jan 2017, Accepted 29 Jun 2017, Published online: 19 Jul 2017

References

  • Abed RMM, Al Kharusi S, Prigent S, Headley T. 2014a. Diversity, distribution and hydrocarbon biodegradation capabilities of microbial communities in oil-contaminated cyanobacterial mats from a constructed wetland. PLOS One. 9:e114570.
  • Abed RMM, Al-Sabahi J, Al-Maqrashi F, Al-Habsi A, Al-Hinai M. 2014b. Characterization of hydrocarbon-degrading bacteria isolated from oil-contaminated sediments in the Sultanate of Oman and evaluation of bioaugmentation and biostimulation approaches in microcosm experiments. Int Biodeterior Biodegradation. 89:58–666.
  • Almansoory AF, Idris M, Abdullah SRS, Anuar N. 2014. Plant-microbe interaction of Serratia marcescens and Scirpus mucronatus on phytoremediation of gasoline contaminated soil. Int J Chemtech Res. 6:556–564.
  • Balasooriya WK, Denef K, Peters J, Verhoest NEC, Boeckx P. 2008. Vegetation composition and soil microbial community structural changes along a wetland hydrological gradient. Hydrol Earth Syst Sci. 12:2272–2291.
  • Behera BC, Mishra RR, Dutta SK, Thatoi HN. 2014. Sulfur oxidizing bacteria in Mangrove system: a review. Afr J Biotechnol. 13:2897–2907.
  • Belimov AA, Hontzeas N, Safronova VI, Demchinskaya SV, Piluzza G, Bullitta S, Glick BR. 2005. Cadmium-tolerant plant growth-promoting bacteria associated with the roots of Indian mustard (Brassica juncea L. Czern.). Soil Biol Biochem. 37:241–250.
  • Bottos EM, Vincent WF, Greer CW, Whyte LG. 2008. Prokaryotic diversity of arctic ice shelf microbial mats. Environ Microbiol. 10:950–966.
  • Bouali M, Feki M, Bakhrouf A. 2014a. Comparative study of two constructed wetlands for wastewater treatment. J Chem Biol Phys Sci. 4:1680–1691.
  • Bouali M, Zrafi I, Bakhrouf A, Chaussonnerie S, Sghir A. 2014b. Bacterial structure and spatiotemporal distribution in a horizontal subsurface flow constructed wetland. App Microbiol Biotechnol. 98:1203–3191.
  • Cébron A, Louvel B, Faure P, France-Lanord C, Chen Y, Murrell YC, Leyval C. 2011. Root exudates modify bacterial diversity of phenanthrene degraders in PAH-polluted soil but not phenanthrene degradation rates. Environ Microbiol. 13:722–736.
  • Chandra R, Bharagava RN, Kapley A, Purohit HJ. 2012. Characterization of Phragmites cummunis rhizosphere bacterial communities and metabolic products during the two stage sequential treatment of post methanated distillery effluent by bacteria and wetland plants. Bioresour Technol. 103:78–86.
  • Cunningham JE, Kuiack C. 1992. Production of citric and oxalic acids and solubilization of calcium phosphate by Penicillium bilaii. Appl Environ Microbiol. 58:1451–1458.
  • Dipak P, Sinha SN. 2013. Bacteria showing phosphate solubilizing efficiency in river sediment. J Biosci. 1:1–5.
  • Erguven GO. 2017. Comparison the performance of some soil fungi on ethalfluralin biodegradation with chemical oxygen demand and turbidity. EC Microbiol. 5(6):203–208.
  • Erguven GO, Bayhan H, Demir G, Ikizoglu B, Kanat G. 2016. Monitoring aclonifen remediation in soil with a laboratory-scale research. J Chem. Article ID 5059049.
  • Fitriatin BN, Arief DH, Simarmata T, Santosa DW, Joy B. 2011. Phosphatase-producing bacteria isolated from Sanggabuana forest and their capability to hydrolyze organic phosphate. J Soil Sci Environ Manag. 2:299–303.
  • Fitzgerald JW. 1976. Sulfate ester formation and hydrolysis: a potentially important yet often ignored aspect of the sulfur cycle of aerobic soils. Bacteriol Rev. 40:698–721.
  • George P, A G, M G, Thomas L, Thomas GV. 2013. Multifarious beneficial traits and plant growth promoting potential of Serratia marcescens KiSII and Enterobacter sp. RNF 267 isolated from the rhizosphere of coconut palms (Cocos nucifera L.). World J Microbiol Biotechnol. 29:109–117.
  • Gordon SA, Weber RP. 1951. Colorimetric estimation of indole- acetic acid. Plant Physiol. 26:192–195.
  • Gulati A, Vyas P, Rahi P, Kasana RC. 2009. Plant growth-promoting and rhizosphere-competent Acinetobacter rhizosphaerae strain BIHB 723 from the cold deserts of the Himalayas. Curr Microbiol. 58:371–377.
  • Gyaneshwar P, James E, Mathan N, Reddy P, Reinhold-Hurek B, Ladha JK. 2001. Endophytic colonization of rice by a diazotrophic strain of Serratia marcescens. J Bacteriol. 183:2634–2645.
  • Haaijer SC, Van der Welle ME, Schmid MC, Lamers LP, Jetten MS, Op Den Camp HJ. 2006. Evidence for the involvement of betaproteobacterial Thiobacilli in the nitrate-dependent oxidation of iron sulfide minerals. FEMS Microbiol Ecol. 58:439–448.
  • Hemalatha S, Veeramanikandan P. 2011. Characterization of aromatic hydrocarbon degrading bacteria from petroleum contaminated sites. J Environ Prot. 2:243–254.
  • Huang XF, Chaparro JM, Reardon KF, Zhang R, Shen Q, Vivanco JM. 2014. Rhizosphere interactions: root exudates, microbes, and microbial communities. Botany. 92:267–275.
  • Jiang XT, Peng X, Deng GH, Sheng HF, Wang Y, Zhou HW, Tam NFY. 2013. Illumina sequencing of 16S rRNA Tag revealed spatial variations of bacterial communities in a Mangrove wetland. Environ Microbiol. 66:96–104.
  • Kadlec RH, Wallace S. 2008. Treatment Wetlands. Boca Raton (FL): CRC Press.
  • Kleikemper J, Schroth MH, Sigler WV, Schmucki M, Bernasconi SM, Zeyer J. 2002. Activity and diversity of sulfate-reducing bacteria in a petroleum hydrocarbon-contaminated aquifer. Appl Environ Microbiol. 68:1516–1523.
  • Li YH, Zhu JN, Liu QF, Liu Y, Liu M, Liu L, Zhang Q. 2013. Comparison of the diversity of root-associated bacteria in Phragmites australis and Typha angustifolia in artificial wetlands. World J Microbiol Biotechnol. 29:1499–1508.
  • Likar M, Regvar M, Mandic-Mulec I, Stres B, Bothe H. 2009. Diversity and seasonal variations of mycorrhiza and rhizosphere bacteria in three common plant species at the Slovenian Ljubljana Marsh. Biol Fertil Soils. 45:573–583.
  • Lv X, Yu J, Fu Y, Ma B, Qu F, Ning K, Wu H. 2014. A meta-analysis of the bacterial and archaeal diversity observed in wetland soils. Sci World J. 2014:1–12. Article ID 437684.
  • Mishra SS, Markande AR, Keluskar RP, Karunasagar I, Nayak BB. 2015. Simultaneous nitrification and denitrification by novel heterotrophs in remediation of fish processing effluent. J Basic Microbiol. 54:1–8.
  • Mohite B. 2013. Isolation and characterization of indole acetic acid (IAA) producing bacteria from rhizospheric soil and its effect on plant growth. J Soil Sci Plant Nutr. 13:638–649.
  • Mwajita MR, Murage H, Tani A, Kahangi EM. 2013. Evaluation of rhizosphere, rhizoplane and phyllosphere bacteria and fungi isolated from rice in Kenya for plant growth promoters. SpringerPlus. 2:606.
  • Nadeem SM, Zahir ZA, Naveed M, Asghar HN, Arshad M. 2010. Rhizobacteria capable of producing ACC-deaminase may mitigate salt stress in wheat. Soil Sci Soc Am J. 74:533–542.
  • Ortega-González DK, Zaragoza D, Aguirre-Garrido J, Ramírez-Saad H, Hernández-Rodríguez C, Jan-Roblero J. 2013. Degradation of benzene, toluene, and xylene isomers by a bacterial consortium obtained from rhizosphere soil of Cyperus sp. grown in a petroleum-contaminated area. Folia Microbiol. 58:569–577.
  • Pavitra BV, Sreenivasa MN, Savalgi VP, Shirnalli G. 2015. Isolation of potential phototrophic purple non-sulphur bacteria in paddy and their effects on paddy seedlings in hydroponic culture. Afr J Microbiol Res. 9:814–820.
  • Pérez-Miranda S, Cabirol N, George-Téllez R, Zamudio-Rivera LS, Fernández FJ. 2007. O-CAS, a fast and universal method for siderophore detection. J Microbiol Methods. 70:127–131.
  • Ravit B, Ehrenfeld JG, Haggblom MM. 2003. A comparison of sediment microbial communities associated with Phragmites australis and Spartina altemiflora in two brackish wetlands of New Jersey. Estuaries. 26:465–474.
  • Rokhbakhsh-Zamin F, Sachdev D, Kazemi-Pour N, Engineer A, Pardesi KR, Zinjarde S, Dhakephalkar PK, Chopade BA. 2011. Characterization of plant-growth-promoting traits of Acinetobacter species isolated from rhizosphere of Pennisetum glaucum. J Microbiol Biotechnol. 21:556–566.
  • Ruiz-Rueda O, Hallin S, Baneras L. 2009. Structure and function of denitrifying and nitrifying bacterial communities in relation to the plant species in a constructed wetland. FEMS Microbiol Lett. 67:308–319.
  • Schmid M, Iversen C, Gontia I, Stephan R, Hofmann A, Hartmann A, Jha B, Eberl L, Riedel K, Lehner A. 2009. Evidence for a plant-associated natural habitat for Cronobacter spp. Res Microbio. 160:608–614.
  • Tian W, Zhao Y, Sun H, Bai J, Wang Y, Wu C. 2014. The effect of irrigation with oil-polluted water on microbial communities in estuarine reed rhizosphere soils. Ecol Eng. 70:275–281.
  • Ukaegbu-Obi KM, Mbakwem-Aniebo CC. 2014. Bioremediation potentials of bacteria isolated from rhizosphere of some plants of oil contaminated soil of niger delta. Appl Environ Microbiol. 2:194–197.
  • Vladár P, Rusznyák A, Márialigeti K, Borsodi AK. 2008. Diversity of sulfate-reducing bacteria inhabiting the rhizosphere of Phragmites australis in lake velencei (Hungary) revealed by a combined cultivation-based and molecular approach. Microb Ecol. 56:64–75.
  • Whitmire SL, Hamilton SK. 2005. Rapid removal of nitrate and sulfate in freshwater wetland sediments. J Environ Qual. 34:2062–2071.
  • Yue Y, Wang H, Liu J, Wang Q, Shen T, Guo W, Wang R. 2012. Shifts in microbial community function and structure along the successional gradient of coastal wetlands in Yellow River Estuary. Eur J Soil Biol. 49:12–21.
  • Zhang W, Wu X, Liu G, Chen T, Zhang G, Dong Z, Yang X, Hu P. 2013. Pyrosequencing reveals bacterial diversity in the rhizosphere of three Phragmites australis ecotypes. Geomicrobiol J. 30:593–599.
  • Zou J, Liu X, He C, Zhang X, Zhong C, Wang C, Wei J. 2013. Effect of Scripus triqueter of its rhizosphere and root exudates on microbial community structure of simulated diesel-spiked wetland. Int Biodeterior Biodegradation. 82:110–116.

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