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EMERGING TECHNOLOGIES

Achievements in and future prospects for molecular diagnostics of plant-parasitic nematodes

Pages 176-185 | Accepted 30 Mar 2005, Published online: 01 Apr 2010

References

  • Albertson , D. 1984 . Localization of the ribosomal genes in Caenorhabditis elegans chromosomes by in situ hybridisation using biotin-labelled probes . EMBO J. , 3 : 1227 – 1234 .
  • Armstrong , M. R. , Blok , V. C. and Phillips , M. S. 2000 . multipartite mitochondrial genome in the potato cyst nematode Globodera pallida . Genetics , 154 : 181 – 192 .
  • Bates , J. A. , Taylor , E. J. A. , Gans , P. T. and Thomas , J. E. 2002 . Determination of relative proportion of Globodera species in mixed populations of potato cyst nematodes using PCR product melting point analysis . Mol. Plant Pathol. , 3 : 153 – 161 .
  • Blaxter , M. L. , De Ley , P. , Garey , J. R. , Liu , L. X. , Scheldeman , P. , Vierstraete , A. , Vanfleteren , J. R. , Mackey , L. Y. , Dorris , M. , Frisse , L. M. , Vida , J. T. and Thomas , W. K. 1998 . A molecular evolutionary framework for the phylum Nematoda . Nature (London) , 392 : 71 – 75 .
  • Blok , V. C. Molecular diagnostics for plant-parasitic nematodes. In Proceedings of the Fourth International Congress of Nematology . June 8–13 2002 , Tenerife, Spain. Edited by: Cook , R. and Hunt , D. J. pp. 195 – 206 . Leiden, , the Netherlands : Brill .
  • Blok , V. C. , Phillips , M. S. and Fargette , M. 1997 . Comparison of sequences from the ribosomal DNA intergenic region of Meloidogyne mayaguensis and other major tropical root-knot nematodes . J. Nematol. , 29 : 16 – 22 .
  • Blok , V. C. , Malloch , G. , Harrower , B. , Phillips , M. S. and Vrain , T. C. 1998 . Intraspecific variation in ribosomal DNA in populations of the potato cyst nematode Globodera pallida . J. Nematol , 30 : 262 – 274 .
  • Blok , V. C. , Wishart , J. , Fargette , M. , Berthier , K. and Phillips , M. S. 2002 . Mitochondrial DNA differences distinguishing Meloidogyne mayaguensis from the major species of tropical root-knot nematodes . Nematology , 4 : 773 – 781 .
  • Blouin , M. S. 2002 . Molecular prospecting for cryptic species of nematodes: mitochondrial DNA versus internal transcribed spacer . Int. J. Parasitol. , 32 : 527 – 531 .
  • Boutsika , K. , Phillips , M. S. , MacFarlane , S. A. , Brown , D. J. F. , Holeva , R. C. and Blok , V. C. 2003 . Molecular diagnostics of some trichodorid nematodes and associated Tobacco rattle virus 2003 . Plant Pathol. , 53 : 110 – 116 .
  • Boutsika , K. , Blok , V. C. , Phillips , M. S. , Leis , S. A. , Robbins , R. T. , Ferraz , L. C. C. B. and Brown , D. J. F. 2004 . Confirmation of the synonymy of Paratrichodorus christiei (Allen 1957) Siddiqi 1974 with P. minor (Colbran 1956) Siddiqi 1974 (Nematoda: Triplonchida) based on sequence data obtained from the ribosomal DNA 18S gene . Nematology , 6 : 145 – 151 .
  • Brito , J. , Powers , T. O. , Mullin , P. G. , Inserra , R. N. and Dickson , D. W. 2004 . Morphological and molecular characterization of Meloidogyne mayaguensis from Florida . J. Nematol. , 36 : 232 – 240 .
  • Chen , Q. , Robertson , L. , Jones , J. T. , Blok , V. C. , Phillips , M. S. and Brown , D. J. F. 2001 . Capture of nematodes using antiserum and lectin-coated magnetised beads . Nematology , 3 : 593 – 601 .
  • Chen , Q. , Brown , D. J. F. , Curtis , R. H. and Jones , J. T. 2003 . Development of a magnetic capture system for recovery of Xiphinema americanum . Ann. Appl. Biol. , 143 : 283 – 289 .
  • De Ley , P. and Bert , W. 2002 . Video capture and editing as a tool for the storage, distribution and illustration of morphological characters of nematodes . J. Nematol. , 34 : 296 – 302 .
  • Dong , K. , Dean , R. A. , Fortnum , B. A. and Lewis , S. A. 2001 . Development of PCR primers to identify species of root-knot nematodes: Meloidogyne arenaria, M. hapla, M. incognita, and M. javanica. . Nematropica , 31 : 271 – 280 .
  • Floyd , R. , Abebe , E. , Artemis , P. and Blaxter , M. 2002 . Molecular barcodes for soil nematode identification . Mol. Ecol , 11 : 839 – 850 .
  • Fullaondo , A. , Barrena , E. , Viribay , M. , Barrena , I. , Salazar , A. and Ritter , E. 1999 . Identification of potato cyst nematode species Globodera rostochiensis and G. pallida by PCR using specific primer combinations . Nematology , 1 : 157 – 163 .
  • Harris , T. S. , Sandall , L. J. and Powers , T. O. 1990 . Identification of single Meloidogyne juveniles by polymerase chain reaction amplification of mitochondrial DNA . J. Nematol. , 22 : 518 – 524 .
  • He , Y. , Li , H. M. , Brown , D. J. F. , Lamberti , F. and Moens , M. 2003 . Isolation and characterisation of microsatellites for Xiphinema index using degenerate oligonucleotide primed PCR . Nematology , 5 : 809 – 819 .
  • Holeva , R. 2004 . Molecular differentiation of Trichodorid nematodes and functional studies of the transmission of their associated Tobacco rattle virus , Dundee, , UK : Faculty of Life Sciences, University of Dundee . Ph.D thesis
  • Hübschen , J. , Kling , L. , Ipach , U. , Zinkernagel , V. , Bosselut , N. , Esmenjaud , D. , Brown , D. J. F. and Neilson , R. 2004a . Validation of the specificity and sensitivity of species-specific primers that provide a reliable molecular diagnostic for Xiphinema diversicaudatum, X. index and X. vuittenezi . Eur. J. Plant Pathol , 110 : 779 – 788 .
  • Hübschen , J. , Kling , L. , Ipach , U. , Zinkernagel , V. , Brown , D. J. F. and Neilson , R. 2004b . Development and validation of species-specific primers that provide a molecular diagnostic for virus-vector Longidorid nematodes and related species in German viticulture . Eur. J. Plant Pathol. , 110 : 883 – 891 .
  • Hugall , A. , Stanton , J. and Moritz , C. 1999 . Reticulate evolution and the origins of ribosomal internal transcribed spacer diversity in apomictic Meloidogyne . Mol. Biol. Evol. , 16 : 157 – 164 .
  • Jones , J. T. , Phillips , M. S. and Armstrong , M. R. 1997 . Molecular approaches in plant nematology . Fundam. Appl. Nematol , 20 : 1 – 14 .
  • Kang , J. S. , Choi , K. S. , Shin , C. , Moon , I. S. , Lee , S. G. and Lee , S. H. 2004 . Development of an efficient PCR-based diagnosis protocol for the identification of the pinewood nematode, Bursaphelenchus xylophilus (Nematoda: Aphelenchoididae) . Nematology , 6 : 279 – 285 .
  • Karssen , G. 1996 . Description of Meloidogyne fallax n. sp. (Nematoda: Heteroderidae), a root-knot nematode from the Netherlands . Fundam. Appl. Nematol. , 19 : 593 – 599 .
  • Karssen , G. , Bolk , R. J. , Van Aelst , A. C. , Van den Beld , I. , Kox , L. F. F. , Korthals , G. , Molendijk , L. , Zijlstra , C. , Van Hoof , R. and Cook , R. 2004 . Description of Meloidogyne minor n. sp. (Nematoda: Meloidogynidae), a root-knot nematode associated with yellow patch disease in golf courses . Nematology , 6 : 59 – 72 .
  • Kushalappa , A. C. , Lui , L. H. , Chen , C. R. and Lee , B. 2002 . Volatile fingerprinting (SPME-GC-FID) to detect and discriminate diseases of potato tubers . Plant Dis. , 86 : 131 – 137 .
  • Lévesque , A. C. 2001 . Molecular methods for detection of plant pathogens – What is the future? . Can. J. Plant Pathol , 24 : 333 – 336 .
  • Mulholland , V. , Carde , L. , O'Donnell , K. J. , Fleming , C. C. and Powers , T. O. Use of polymerase chain reaction to discriminate potato cyst nematode at the species level . Diagnostics in Crop Production. BCPC Symposium Proceedings No. 65. University of Warwick . April 1–3 1996 , Coventry, UK. pp. 247 – 252 . Farnham, Surrey, , UK : British Crop Protection Council .
  • Okimoto , R. , Chamberlin , H. M. , MacFarlane , J. L. and Wolstenholme , D. R. 1991 . Repeated sequence sites in mitochondrial DNA molecules of root knot nematodes (Meloidogyne): nucleotide sequences, genome location and potential for host-race identification . Nucleic Acid Res. , 19 : 1619 – 1626 .
  • Oliveira , C. M. G. , Hubschen , J. , Brown , D. J. F. , Ferraz , L. C. C. B. , Wright , F. and Neilson , R. 2004 . Phylogenetic relationships among Xiphinema and Xiphidorus nematode species from Brazil inferred from 18S rDNA sequences . J. Nematol. , 6 : 153 – 159 .
  • Petersen , D. J. , Zijlstra , C. , Wishart , J. , Blok , V. and Vrain , T. C. 1997 . Specific probes efficiently distinguish root-knot nematode species using signature sequences in the ribosomal intergenic spacer . Fundam. Appl. Nematol. , 20 : 619 – 626 .
  • Powers , T. O. 2004 . Nematode molecular diagnostics: From bands to barcodes . Annu. Rev. Phytopathol. , 42 : 367 – 383 .
  • Powers , T. O. and Harris , T. S. 1993 . A polymerase chain reaction method for identification of five major Meloidogyne species . J. Nematol. , 25 : 1 – 6 .
  • Powers , T. O. , Todd , T. C. , Burnell , A. M. , Murray , P. C. B. , Fleming , C. C. , Szalanski , A. L. , Adams , B. A. and Harris , T. S. 1997 . The rDNA internal transcribed spacer as a taxonomic marker for nematodes . J. Nematol , 29 : 441 – 450 .
  • Randig , O. , Bongiovanni , M. , Carneiro , R. M. D. G. and Castagnone-Sereno , P. 2002 . Genetic diversity of root-knot nematodes from Brazil and development of SCAR markers specific for the coffee-damaging species . Genome , 45 : 862 – 870 .
  • Schaad , N. W. and Frederick , R. D. 2002 . Real-time PCR and its application for rapid plant disease diagnostics . Can. J. Plant Pathol. , 24 : 250 – 258 .
  • Semblat , J.-P. , Rosso , M.-N. , Hussey , R. S. , Abad , P. and Castagnone-Sereno , P. 2001 . Molecular cloning of a cDNA encoding an amphid-secreted putative avirulence protein from the root-knot nematode Meloidogyne incognita . MPMI , 14 : 72 – 79 .
  • Setterquist , R. A. , Smith , G. K. , Jones , R. and Fox , G. E. 1996 . Diagnostic probes targeting the major sperm protein gene that may be useful in the molecular identification of nematodes . J. Nematol. , 28 : 414 – 421 .
  • Sheilds , R. , Fleming , C. C. and Stratford , R. 1996 . Identification of potato cyst nematodes using the polymerase chain reaction . Fundam. Appl. Nematol. , 19 : 167 – 173 .
  • Stanton , J. , Hugall , A. and Mortiz , C. 1997 . Nucleotide polymorphisms and an improved PCR-based mtDNA diagnostic for parthenogenetic root-knot nematodes (Meloidogyne spp.) . Fundam. Appl. Nematol , 20 : 261 – 268 .
  • Subbotin , S. A. , Halford , P. D. , Warry , A. and Perry , R. N. 2000 . Variation in ribosomal DNA sequences and phylogeny of Globodera parasitising solanaceous plants . Nematology , 2 : 591 – 604 .
  • Subbotin , S. A. , Peng , D. and Moens , M. 2001 . A rapid method for the identification of the soybean cyst nematode Heterodera glycines using duplex PCR . Nematology , 2 : 365 – 371 .
  • Subbotin , S. A. , Sturhan , D. , Rumpenhorst , H. J. and Moens , M. 2003 . Molecular and morphological characterisation of the Heterodera avenae species complex (Tylenchida: Heteroderidae) . Nematology , 5 : 515 – 538 .
  • Uehara , T. , Kushida , A. and Momota , Y. 1999 . Rapid and sensitive identification of Pratylenchus spp. using reverse dot blot hybridisation . Nematology , 1 : 549 – 555 .
  • Veronico , P. , De Luca , F. and De Giorgi , C. 2004 . Molecular dissection of the rDNA array and of the 5S rDNA gene in Meloidogyne artiellia: phylogenetic and diagnostic implications . Mol. Cell. Probes , 18 : 177 – 183 .
  • Vrain , T. C. , Wakarchuk , D. A. , Lévesque , A. C. and Hamilton , R. I. 1992 . Intraspecific rDNA restriction fragments length polymorphisms in the Xiphinema americanum group . Fundam. Appl. Nematol , 15 : 563 – 573 .
  • Wang , X. , Bosselut , N. , Castagnone , C. , Voison , R. , Abad , P. and Esmenjaud , D. 2003 . Multiplex polymerase chain reaction identification of single individuals of the Longidorid nematodes Xiphinema index, X. diversicaudatum, X. vuittenezi and X. italiae using specific primers from ribosomal genes . Phytopathology , 93 : 160 – 166 .
  • Williamson , V. M. , Caswell Chen , E. P. , Westerdahl , B. B. , Wu , F. F. and Caryl , G. 1997 . A PCR assay to identify and distinguish single juveniles of Meloidogyne hapla and M. chitwoodi . J. Nematol. , 29 : 9 – 15 .
  • Wishart , J. , Phillips , M. S. and Blok , V. C. 2002 . Ribosomal intergenic spacer: a PCR diagnostic for Meloidogyne chitwoodi, M. fallax and M. hapla. . Phytopathology , 92 : 884 – 892 .
  • Wuyts , J. , Van de Perr , Y. and de Wachter , R. 2001 . Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA . Nucleic Acids Res. , 29 : 5017 – 5028 .
  • Zijlstra , C. 2000 . Identification of Meloidogyne chitwoodi, M. fallax and M. hapla based on SCAR-PCR: a powerful way of enabling reliable identification of populations or individuals that share common traits . Eur. J. Plant Pathol , 106 : 283 – 290 .
  • Zijlstra , C. , Lever , A. E. M. , Uenk , B. J. and van Silfout , C. H. 1995 . Differences between ITS regions of isolates of root-knot nematodes Meloidogyne hapla and M. chitwoodi. . Phytopathology , 85 : 1231 – 1237 .
  • Zijlstra , C. , Donkers-Venne , D. T. H. M. and Fargette , M. 2000 . Identification of Meloidogyne incognita, M. javanica and M. arenaria using sequence characterised amplified region (SCAR) based PCR assays . Nematology , 2 : 847 – 853 .

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