Genetic diversity of Verticillium dahliae from olive trees in Tunisia based on RAMS and IGS-RFLP analyses

References

• Alkher H, El Hadrami A, Rashid KY, Adam LR, Daayf F. 2009. Pathogenic variation of Verticillium dahliae after serial passages through potato and sunflower. Can J Plant Pathol. 31:427–438. doi:10.1080/07060660909507617
   Web of Science ®Google Scholar
• Appel D, Gordon TR. 1995. Intraspecific variation within populations of Fusarium oxysporum based on RFLP analysis of the intergenic spacer region of the rDNA. Exp Mycol. 19:120–128. doi:10.1006/emyc.1995.1014
   PubMedGoogle Scholar
• Bainbridge BW. 1994. Modern approaches to the taxonomy of Aspergillus. In: Powell KA, Peberdy J and Renwick A, editors. Genetics and physiology of Aspergillus. New York: Plenum Press; 291–301.
   Google Scholar
• Barbara DJ, Clewes E. 2003. Plant pathogenic Verticillium species: how many of them are there?. Mol Plant Pathol. 4:297–305. doi:10.1046/j.1364-3703.2003.00172.x
   PubMed Web of Science ®Google Scholar
• Bellahcene M, Assigbetsi K, Fortas Z, Geiger JP, Nicole M, Fernandez D. 2005. Genetic diversity of Verticillium dahliae isolates from olive trees in Algeria. Phytopathol Mediter. 74:266–274.
   Google Scholar
• Bhat RG, Subbarao KV. 1999. Host range specificity in Verticillium dahliae. Phytopathology. 89:1218–1225. doi:10.1094/PHYTO.1999.89.12.1218
   PubMed Web of Science ®Google Scholar
• Bilodeau GJ, Koike ST, Uribe P, Martin FN. 2012. Development of an assay for rapid detection and quantification of Verticillium dahliae in soil. Phytopathology. 102:331–343. doi:10.1094/PHYTO-05-11-0130
   PubMed Web of Science ®Google Scholar
• Børja I, Solheim H, Hietala AM, Fossdal CG. 2006. Etiology and real time polymerase chain reaction based detection of Gremmeniella and Phomopsis associated disease in Norway spruce seedling. Phytopathology. 96:1305–1314. doi:10.1094/PHYTO-96-1305
   PubMed Web of Science ®Google Scholar
• Burgess T, Wingfield MJ, Wingfield BW. 2001. Simple sequence repeat markers distinguish among morphotypes of Sphaeropsis sapinea. Appl Environ Microbiol. 67:354–362. doi:10.1128/AEM.67.1.354-362.2001
   PubMed Web of Science ®Google Scholar
• Campbell CL, Madden LV. 1990. Introduction to plant disease epidemiology. New York: John Wiley and Sons; p. 532.
   Google Scholar
• Cherrab M, Serrhini MN, Charest PM. 2000. Characterization of Moroccan isolates of Verticillium dahliae Kleb. Using RAPD markers. J Phytopathol. 148:243–249. doi:10.1046/j.1439-0434.2000.00500.x
   Web of Science ®Google Scholar
• Choi YW, Hyde KD, Ho W. 1999. Single spore isolation of fungi. Fungal Diversity. 3:29–38.
   Google Scholar
• Cohen S, Allasia V, Venard P, Notter S, Vernière CH, Panabières F. 2003. Intraspecific variation in Phytophthora citrophthora from citrus trees in eastern Corsica. Eur J Plant Pathol. 109:791–805. doi:10.1023/A:1026190318631
   Web of Science ®Google Scholar
• Collado-Romero M, Mercado-Blanco J, Olivares-García C, Valverde-Corredor A, Jiménez-Díaz RM. 2006. Molecular variability within and among Verticillium dahliae vegetative compatibility groups determined by fluorescent amplified fragment length polymorphism and polymerase chain reaction markers. Phytopathology. 96:485–495. doi:10.1094/PHYTO-96-0485
   PubMed Web of Science ®Google Scholar
• Daayf F, Nicole M, Geiger JP. 1995. Differentiation of Verticillium dahliae populations on the basis of vegetative compatibility and pathogenicity on cotton. Eur J Plant Pathol. 101:69–79. doi:10.1007/BF01876095
   Web of Science ®Google Scholar
• Dobinson KF, Harrington MA, Omer M, Rowe RC. 2000. Molecular characterization of vegetative compatibility group 4A and 4B isolates of Verticillium dahliae associated with potato early dying. Plant Dis. 84:1241–1245. doi:10.1094/PDIS.2000.84.11.1241
   PubMed Web of Science ®Google Scholar
• El-Bebany AF, Alkher H, Adam LR, Daayf F. 2013. Vegetative compatibility of Verticillium dahliae isolates from potato and sunflower using nitrate-nonutilizing (nit) mutants and PCR-based approaches. Can J Plant Pathol. 35:1–9. doi:10.1080/07060661.2012.702128
   Web of Science ®Google Scholar
• El-Bebany AF, Henriquez MA, Badawi M, Adam L.R., El Hadrami A, Daayf F. 2011. Induction of putative pathogenicity-related genes in Verticillium dahliae in response to elicitation with potato root extracts. Environ Exp Bot. 72:251–257. doi:10.1016/j.envexpbot.2011.03.012
   Web of Science ®Google Scholar
• El-Bebany AF, Rampitsch C, Daayf F. 2010. Proteomic analysis of the phytopathogenic soilborne fungus Verticillium dahliae reveals differential protein expression in isolates that differ in aggressiveness. Proteomics. 10:289–303. doi:10.1002/pmic.200900426
   PubMed Web of Science ®Google Scholar
• El Hadrami A, Adam LR, Daayf F. 2011. Biocontrol treatments confer protection against Verticillium dahliae infection of potato by inducing anti-microbial metabolites. Mol. Plant-Microbe Interact. 24:328–335. doi:10.1094/MPMI-04-10-0098
   PubMed Web of Science ®Google Scholar
• Erdogan O, Nemli S, Oncu T, Tanyolac B. 2013. Genetic variation among pathotypes of Verticillium dahliae Kleb. from cotton in western Turkey revealed by AFLP. Can J Plant Pathol. 35:354–362. doi:10.1080/07060661.2013.809790
   Web of Science ®Google Scholar
• Food and Agriculture Organization of the United Nations. 2008. FAOSTAT online database. Available from: http://www.fao.org/corp/statistics/en/
   Google Scholar
• Galperina MI. 1990. Genetic effects of some pesticides on Verticillium spp. Proceedings of the Fifth International Verticillium symposium, June 25–30, Leningrad, USSR; p. 101.
   Google Scholar
• Hantula J, Dusabenyagasani M, Hamelin RC. 1996. Random amplified microsatellites (RAMS) ? a novel method for characterizing genetic variation within fungi. Forest Pathology. 26:159–166. doi:10.1111/j.1439-0329.1996.tb00720.x
   Web of Science ®Google Scholar
• Hantula J, Müller M. 1997. Variation within Gremmeniella abietina in Finland and other countries as determined by Random Amplified Microsatellites (RAMS). Mycol Res. 101:169–175. doi:10.1017/S0953756296002225
   Google Scholar
• Hantula J, Niemi EM, Kaitera J, Jalkanen R, Kurkela T. 1998. Genetic variation of the resin top fungus in Finland as determined by random amplified microsatellites (RAMS). Forest Pathology. 28:361–372. doi:10.1111/j.1439-0329.1998.tb01190.x
   Web of Science ®Google Scholar
• Jabnoun-Khiareddine H, Daami-Remadi M, Hibar K, Ayed F, El Mahjoub M. 2006. Pathogenecity of Tunisian Isolates of Three Verticillium Species on Tomato and Eggplant. Plant Pathol J. 5:199–207. doi:10.3923/ppj.2006.199.207
   Google Scholar
• Jurado D, López MA, Rapoport HF, Diaz RM. 1993. Present status of verticillium wilt of olive in Andalucía (southern Spain). EPPO Bull. 23:513–516. doi:10.1111/j.1365-2338.1993.tb01362.x
   Google Scholar
• Klosterman SJ, Atallah ZK, Vallad GE, Subbarao KV. 2009. Diversity, pathogenicity and management of Verticillium species. Annu Rev Phytopathol. 47:39–62. doi:10.1146/annurev-phyto-080508-081748
   PubMed Web of Science ®Google Scholar
• Korolev N, Pérez-Artés E, Mercado-Blanco J, Bejarano-Alcázar J, Rodríguez-Jurado D, Jiménez-Díaz RM, Katan T, Katan J. 2008. Vegetative compatibility of cotton-defoliating Verticillium dahliae in Israel and its pathogenicity to various crop plants. Eur J Plant Pathol. 122:603–617. doi:10.1007/s10658-008-9330-1
   Web of Science ®Google Scholar
• Lopez-Escudero FJ, Mercado-Blanco J, Roca JM, Valverde-Corredor A, Blanco-López MA. 2010. Verticillium wilt of olive in the Guadalquivir Valley (southern Spain): relations with some agronomical factors and spread of Verticillium dahliae. Phytopathol Med. 49:370–380.
   Web of Science ®Google Scholar
• Mahuku GS, Henríquez MA, Munõz J, Buruchara R. 2002. Molecular Markers Dispute the Existence of the Afro-Andean Group of the Bean Angular Leaf Spot Pathogen,Phaeoisariopsis griseola. Phytopathology. 92:580–589. doi:10.1094/PHYTO.2002.92.6.580
   PubMed Web of Science ®Google Scholar
• Mishra P, Fox ROLAND T V., Culham A. 2003. Inter-simple sequence repeat and aggressiveness analyses revealed high genetic diversity, recombination and long-range dispersal in Fusarium culmorum. Ann Appl Biol. 143:291–301. doi:10.1111/j.1744-7348.2003.tb00297.x
   Web of Science ®Google Scholar
• Morton A, Carder JH, Barbara DJ. 1995. Sequences of the internal transcribed spacers of the ribosomal RNA genes and relationships between isolates of Verticillium albo-atrum and V. dahliae. Plant Pathol. 44:183–190. doi:10.1111/j.1365-3059.1995.tb02727.x
   Web of Science ®Google Scholar
• Nazar RN, Hu X, Schmidt J, Culham D, Robb J. 1991. Potential use of PCR-amplified ribosomal intergenic sequences in the detection and differentiation of Verticillium wilt pathogens. Physiol Mol Plant Pathol. 39:1–11. doi:10.1016/0885-5765(91)90027-F
   Web of Science ®Google Scholar
• Otero L, Ducasse D, Miller RNG. 2004. Variability in ribosomal DNA genic and spacer regions in Verticillium dahliae isolates from different hosts. Fitopatol Brasil. 29:441–446. doi:10.1590/S0100-41582004000400015
   Google Scholar
• Papaioannou IA, Dimopoulou CD, Typas MA. 2013. Structural and phylogenetic analysis of the rDNA intergenic spacer region of Verticillium dahliae. FEMS Microbiol Lett. 347:23–32. doi:10.1111/1574-6968.12215
   PubMed Web of Science ®Google Scholar
• Pegg GF, Brady BL. 2002. Verticillium wilts. Wallingford: CAB International.
   Google Scholar
• Pramateftaki PV, Antoniou PP, Typas MA. 2000. The complete DNA sequence of the nuclear ribosomal RNA gene complex of Verticillium dahliae: intraspecific heterogeneity within the intergenic spacer region. Fungal Genet Biol. 29:19–27. doi:10.1006/fgbi.1999.1178
   Web of Science ®Google Scholar
• Qin QM, Vallad GE, Wu B.M., Subbarao KV. 2006. Phylogenetic analyses of phytpathogenic isolates of Verticillium spp. Phytopathology. 96:582–592. doi:10.1094/PHYTO-96-0582
   PubMed Web of Science ®Google Scholar
• Raeder U, Broda P. 1985. Rapid preparation of DNA from filamentous fungi. Lett Appl Microbiol. 1:17–20. doi:10.1111/j.1472-765X.1985.tb01479.x
   Web of Science ®Google Scholar
• Ratanacherdchai K, Waang HK, Lin FC, Soytong K. 2010. ISSR for comparison of cross-inoculation potential of Colletotrichum capsici causing chilli anthracnose. Afr J Microbiol Res. 4:76–83.
   Web of Science ®Google Scholar
• Robb J. 2007. Verticillium tolerance: resistance, susceptibility or mutualism?. Can J Bot. 85:903–910. doi:10.1139/B07-093
   Google Scholar
• Robb J, Hu X, Platt H, Nazar R. 1994. PCR assay for the detection and quantification of Verticillium species in potato. In: Schots A, Dewey FM, Oliver R, editors. Modern detection assay for plant pathogenic fungi: identification, detection and quantification. Oxford: CAB International; p. 83–90.
   Google Scholar
• Rohlf JF. 1988. NTSYS-pc: numerical taxonomy and multivariate analysis system. Version 1.80. Exeter Software. Setauket, NY
   Google Scholar
• Thanassoulopoulos CC. 1993. Spread of verticillium wilt by nursery plants in olive groves in the Halkidiki area (Greece). EPPO Bull. 23:517–520. doi:10.1111/j.1365-2338.1993.tb01363.x
   Google Scholar
• Tooley PW, O’Neill NR, Goley ED, Carras MM. 2000. Assessment of diversity in Claviceps africana and other claviceps species by RAM and AFLP analyses. Phytopathology. 90:1126–1130. doi:10.1094/PHYTO.2000.90.10.1126
   PubMed Web of Science ®Google Scholar
• Triki MA, Hassaïri A, Mahjoub M. 2006. Premières observations de Verticillium dahliae sur olivier en Tunisie. EPPO Bull. 36:69–71. doi:10.1111/j.1365-2338.2006.00941.x
   Google Scholar
• Zhou S, Smith DR, Stanosz GR. 2001. Differentiation of Botryosphaeria species and related anamorphic fungi using inter simple or short sequence repeat (ISSR) fingerprinting. Mycol Res. 105:919–926. doi:10.1016/S0953-7562(08)61947-4
   Google Scholar
• Zietkiewicz E, Rafalski A, Labuda D. 1994. Genome fingerprinting by simple sequence repeat (SSR) - anchored polymerase chain reaction amplification. Genomics. 20:176–183. doi:10.1006/geno.1994.1151
   PubMed Web of Science ®Google Scholar