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Review article/Article de synthèse

Latest advances and future perspectives in Armillaria research

, , , , &
Pages 1-23 | Accepted 07 Dec 2018, Published online: 16 Jan 2019

References

  • Abomo-Ndongo S, Guillaumin JJ. 1997. Somatic incompatibility among African Armillaria isolates. Eur J Forest Pathol. 27:201–206.
  • Achat DL, Deleuze C, Landmann G, Pousse N, Ranger J, Augusto L. 2015. Quantifying consequences of removing harvesting residues on forest soils and tree growth - a meta-analysis. For Ecol Manage. 348:124–141.
  • Aguin-Casal O, Sainz-Oses MJ, Mansilla-Vazquez JP. 2004. Armillaria species infesting vineyards in northwestern Spain. Eur J Plant Pathol. 110:683–687.
  • Akcapinar GB, Kappel L, Sezerman OU, Seidl-Seiboth V. 2015. Molecular diversity of LysM carbohydrate-binding motifs in fungi. Curr Genet. 61:103–113.
  • Anderson JB. 1986. Biological species of Armillaria in North America: redesignation of group IV and group VIII and enumeration of voucher strains for other groups. Mycologia. 78:837–839.
  • Anderson JB, Catona S. 2014. Genomewide mutation dynamic within a long-lived individual of Armillaria gallica. Mycologia. 106:642–648.
  • Anderson JB, Korhonen K, Ullrich RC. 1980. Relationships between European and North American biological species of Armillaria mellea. Exp Mycol. 4:78–86.
  • Anderson JB, Stasovski E. 1992. Molecular phylogeny of Northern Hemisphere species of Armillaria. Mycologia. 84:505–516.
  • Anderson JB, Ullrich RC. 1979. Biological species of Armillaria mellea in North America. Mycologia. 71:402–414.
  • Antonin V, Tomsovsky M, Sedlak P, Majek T, Jankovsky L. 2009. Morphological and molecular characterization of the Armillaria cepistipes - A. gallica complex in the Czech Republic and Slovakia. Mycol Prog. 8:259–271.
  • Aslam AJ, Magel EA. 2018. Influence of drought and season on compartmentalization of black locust (Robinia pseudoacacia L.) inoculated with Armillaria mellea. Eur J Plant Pathol. 152:21–31.
  • Bace R, Svoboda M, Pouska V, Janda P, Cervenka J. 2012. Natural regeneration in Central-European subalpine spruce forests: which logs are suitable for seedling recruitment? For Ecol Manage. 266:254–262.
  • Bakys R, Vasiliauskas A, Ihrmark K, Stenlid J, Menkis A, Vasaitis R. 2011. Root rot, associated fungi and their impact on health condition of declining Fraxinus excelsior stands in Lithuania. Scand J Forest Res. 26:128–135.
  • Baleshta KE, Simard SW, Roach WJ. 2015. Effects of thinning paper birch on conifer productivity and understory plant diversity. Scand J Forest Res. 30:699–709.
  • Banik MT, Burdsall HH. 1998. Assessment of compatibility among Armillaria cepistipes, A. sinapina, and North American biological species X and XI, using culture morphology and molecular biology. Mycologia. 90:798–805.
  • Barbosa P, Hines J, Kaplan I, Martinson H, Szczepaniec A, Szendrei Z. 2009. Associational resistance and associational susceptibility: having right or wrong neighbors. Annu Rev Ecol Evol Syst. 40:1–20.
  • Baumgartner K, Baker BR, Korhonen K, Zhao J, Hughes KW, Bruhn J, Bowman TS, Bergemann SE. 2012. Evidence of natural hybridization among homothallic members of the basidiomycete Armillaria mellea sensu stricto. Fungal Biol. 116:677–691.
  • Baumgartner K, Bhat R, Fujiyoshi P. 2010a. A rapid infection assay for Armillaria and real-time PCR quantitation of the fungal biomass in planta. Fungal Biol. 114:107–119.
  • Baumgartner K, Coetzee MPA, Hoffmeister D. 2011. Secrets of the subterranean pathosystem of Armillaria. Mol Plant Pathol. 12:515–534.
  • Baumgartner K, Fujiyoshi P, Foster GD, Bailey AM. 2010b. Agrobacterium tumefaciens-mediated transformation for investigation of somatic recombination in the fungal pathogen Armillaria mellea. Appl Environ Microbiol. 76:7990–7996.
  • Baumgartner K, Rizzo DM. 2001. Ecology of Armillaria spp. in mixed-hardwood forests of California. Plant Dis. 85:947–951.
  • Baumgartner K, Rizzo DM. 2002. Spread of Armillaria root disease in a California vineyard. Am J Enol Vitic. 53:197–203.
  • Baumgartner K, Rizzo DM. 2006. Relative resistance of grapevine rootstocks to Armillaria root disease. Am J Enol Vitic. 57:408–414.
  • Baumgartner K, Travadon R, Bruhn J, Bergemann SE. 2010c. Contrasting patterns of genetic diversity and population structure of Armillaria mellea sensu stricto in the Eastern and Western United States. Phytopathology. 100:708–718.
  • Baumgartner K, Warnock AE. 2006. A soil inoculant inhibits Armillaria mellea in vitro and improves productivity of grapevines with root disease. Plant Dis. 90:439–444.
  • Bendel M, Kienast F, Rigling D. 2006a. Genetic population structure of three Armillaria species at the landscape scale: a case study from Swiss Pinus mugo forests. Mycol Res. 110:705–712.
  • Bendel M, Kienast F, Rigling D, Bugmann H. 2006b. Impact of root-rot pathogens on forest succession in unmanaged Pinus mugo stands in the Central Alps. Can J For Res. 36:2666–2674.
  • Bérubé JA, Dessureault M. 1989. Morphological studies of the Armillaria mellea complex - 2 new species, Armillaria gemina and Armillaria calvescens. Mycologia. 81:216–225.
  • Bérubé JA, Dessureault M, Berthelay S, Guillaumin JJ. 1996. Interfertility between Armillaria cepistipes and A. sinapina. Phytoprotection. 77:67–74.
  • Bogdanski BEC, Cruickshank M, Di Lucca CM, Becker E. 2018. Stumping out tree root disease - An economic analysis of controlling root disease, including its effects on carbon storage in southern British Columbia. For Ecol Manage. 409:129–147.
  • Bohnert M, Miethbauer S, Dahse HM, Ziemen J, Nett M, Hoffmeister D. 2011. In vitro cytotoxicity of melleolide antibiotics: structural and mechanistic aspects. Bioorg Med Chem Lett. 21:2003–2006.
  • Bohnert M, Nuetzmann HW, Schroeckh V, Horn F, Dahse HM, Brakhage AA, Hoffmeister D. 2014a. Cytotoxic and antifungal activities of melleolide antibiotics follow dissimilar structure-activity relationships. Phytochemistry. 105:101–108.
  • Bohnert M, Scherer O, Wiechmann K, Konig S, Dahse HM, Hoffmeister D, Werz O. 2014b. Melleolides induce rapid cell death in human primary monocytes and cancer cells. Bioorg Med Chem. 22:3856–3861.
  • Boitard S, Rodriguez W, Jay F, Mona S, Austerlitz F. 2016. Inferring population size history from large samples of genome-wide molecular data - an approximate Bayesian computation approach. PLOS Genet. 12:e1005877.
  • Brazee NJ, Marra RE, Wick RL. 2012a. Genotypic diversity of Armillaria gallica from mixed oak forests in Massachusetts. Mycologia. 104:53–61.
  • Brazee NJ, Ortiz-Santana B, Banik MT, Lindner DL. 2012b. Armillaria altimontana, a new species from the western interior of North America. Mycologia. 104:1200–1205.
  • Bruhn JN, Mihail JD, Meyer TR. 1998. Armillaria root disease inoculum remaining in young Ontario conifer plantations following root raking or madge rotoclearing. North J Appl For. 15:191–196.
  • Bruhn JN, Wetteroff JJ, Mihail JD, Kabrick JM, Pickens JB. 2000. Distribution of Armillaria species in upland Ozark Mountain forests with respect to site, overstory species composition and oak decline. Forest Pathol. 30:43–60.
  • Burrill EA, Worrall JJ, Wargo PM, Stehman SV. 1999. Effects of defoliation and cutting in eastern oak forests on Armillaria spp. and a competitor, Megacollybia platyphylla. Can J For Res. 29:347–355.
  • Carvalho DB, Smith ML, Anderson JB. 1995. Genetic exchange between diploid and haploid mycelia of Armillaria gallica. Mycol Res. 99:641–647.
  • Cha JY, Igarashi T. 1995. A note on Armillaria mellea subsp. nipponica subsp. nov. in Japan. Mycoscience. 36:143–146.
  • Chandelier A, Gerarts F, San Martin G, Herman M, Delahaye L. 2016. Temporal evolution of collar lesions associated with ash dieback and the occurrence of Armillaria in Belgian forests. Forest Pathol. 46:289–297.
  • Chapman B, Xiao G. 2000. Inoculation of stumps with Hypholoma fasciculare as a possible means to control Armillaria root disease. Can J Bot. 78:129–134.
  • Chapman B, Xiao GP, Myers S. 2004. Early results from field trials using Hypholoma fasciculare to reduce Armillaria ostoyae root disease. Can J Bot. 82:962–969.
  • Chybicki IJ, Burczyk J. 2009. Simultaneous estimation of null alleles and inbreeding coefficients. J Hered. 100:106–113.
  • Cienciala E, Tumajer J, Zatloukal V, Beranová J, Holá Š, Hůnová I, Russ R. 2017. Recent spruce decline with biotic pathogen infestation as a result of interacting climate, deposition and soil variables. Eur J For Res. 136:307–317.
  • Cleary MR, Arhipova N, Morrison DJ, Thomsen IM, Sturrock RN, Vasaitis R, Gaitnieks T, Stenlid J. 2013. Stump removal to control root disease in Canada and Scandinavia: a synthesis of results from long-term trials. For Ecol Manage. 290:5–14.
  • Clinton BD, Boring LR, Swank WT. 1993. Canopy gap characteristics and drought influences in oak forests of the Coweeta Basin. Ecology. 74:1551–1558.
  • Coetzee MPA, Bloomer P, Wingfield MJ, Wingfield BD. 2011. Paleogene radiation of a plant pathogenic mushroom. PLOS One. 6:e28545.
  • Coetzee MPA, Musasira NY, Roux J, Roets F, van der Merwe NA, Wingfield MJ. 2018. Armillaria root rot spreading into a natural woody ecosystem in South Africa. Plant Pathol. 67:883–891.
  • Coetzee MPA, Wingfield BD, Bloomer P, Ridley GS, Kile GA, Wingfield MJ. 2001a. Phylogenetic relationships of Australian and New Zealand Armillaria species. Mycologia. 93:887–896.
  • Coetzee MPA, Wingfield BD, Bloomer P, Ridley GS, Wingfield MJ. 2003. Molecular identification and phylogeny of Armillaria isolates from South America and Indo-Malaysia. Mycologia. 95:285–293.
  • Coetzee MPA, Wingfield BD, Bloomer P, Wingfield MJ. 2005a. Phylogenetic analyses of DNA sequences reveal species amongst isolates of Armillaria from Africa. Mycol Res. 109:1223–1234.
  • Coetzee MPA, Wingfield BD, Harrington TC, Steimel O, Coutinho TA, Wingfield MJ. 2001b. The root rot fungus Armillaria mellea introduced into South Africa by early Dutch settlers. Mol Ecol. 10:387–396.
  • Coetzee MPA, Wingfield BD, Kirisits T, Chhetri DB, Bloomer P, Wingfield MJ. 2005b. Identification of Armillaria isolates from Bhutan based on DNA sequence comparisons. Plant Pathol. 54:36–45.
  • Coetzee MPA, Wingfield BD, Zhao J, van Coller SJ, Wingfield MJ. 2015. Phylogenetic relationships among biological species of Armillaria from China. Mycoscience. 56:530–541.
  • Collins C, Keane TM, Turner DJ, O’Keeffe G, Fitzpatrick DA, Doyle S. 2013. Genomic and proteomic dissection of the ubiquitous plant pathogen, Armillaria mellea: toward a new infection model system. J Proteome Res. 12:2552–2570.
  • Cruickshank MG, Filipescu CN. 2017. The interactive effect of root disease and climate on wood properties in halfsibling Douglas-fir families. For Ecol Manage. 392:58–67.
  • Cruickshank MG, Filipescu CN, Sturrock RN. 2018. The effect of stump removal and tree admixture on butt decay incidence, damage and wood density in western redcedar. Can J Plant Pathol. 40:368–377.
  • Cruickshank MG, Jaquish B. 2014. Resistance and tolerance in juvenile interior Douglas-fir trees Pseudotsuga menziesii var. glauca artificially inoculated with Armillaria ostoyae. Forest Pathol. 44:362–371.
  • Cruickshank MG, Morrison DJ, Punja ZK. 1997. Incidence of Armillaria species in precommercial thinning stumps and spread of Armillaria ostoyae to adjacent Douglas-fir trees. Can J For Res. 27:481–490.
  • Dempster WR. 2017. Impact of climate on juvenile mortality and Armillaria root disease in lodgepole pine. Forest Chron. 93:148–160.
  • Desprez-Loustau ML, Aguayo J, Dutech C, Hayden KJ, Husson C, Jakushkin B, Marçais B, Piou D, Robin C, Vacher C. 2016. An evolutionary ecology perspective to address forest pathology challenges of today and tomorrow. Ann For Sci. 73:45–67.
  • Desprez-Loustau ML, Marçais B, Nageleisen LM, Piou D, Vannini A. 2006. Interactive effects of drought and pathogens in forest trees. Ann For Sci. 63:597–612.
  • Dettman JR, van der Kamp BJ. 2001a. The population structure of Armillaria ostoyae and Armillaria sinapina in the central interior of British Columbia. Can J Bot. 79:600–611.
  • Dettman JR, van der Kamp BJ. 2001b. The population structure of Armillaria ostoyae in the southern interior of British Columbia. Can J Bot. 79:612–620.
  • Drakulic J, Gorton C, Perez-Sierra A, Clover G, Beal L. 2017. Associations between Armillaria species and host plants in UK gardens. Plant Dis. 101:1903–1909.
  • Duchesne LC, Anderson JB. 1990. Location and direction of transcription of the 5S ribosomal RNA gene in Armillaria. Mycol Res. 94:266–269.
  • Dukes JS, Pontius J, Orwig D, Garnas JR, Rodgers VL, Brazee N, Cooke B, Theoharides KA, Stange EE, Harrington R, et al. 2009. Responses of insect pests, pathogens, and invasive plant species to climate change in the forests of northeastern North America: what can we predict? Can J For Res. 39:231–248.
  • Dumas MT. 1992. Inhibition of Armillaria by bacteria isolated from soils of the boreal mixedwood forest of Ontario. Eur J Forest Pathol. 22:11–18.
  • Durrieu G, Beneteau A, Niocel S. 1985. Armillaria obscura dans l’écosystème forestier de Cerdagne. Eur J Forest Pathol. 15:350–355.
  • Dutech C, Labbé F, Capdevielle X, Lung-Escarmant B. 2017. Genetic analysis reveals efficient sexual spore dispersal at a fine spatial scale in Armillaria ostoyae, the causal agent of root-rot disease in conifers. Fungal Biol. 121:550–560.
  • Dyderski MK, Paz S, Frelich LE, Jagodzinski AM. 2018. How much does climate change threaten European forest tree species distributions? Glob Change Biol. 24:1150–1163.
  • Edman M, Gustafsson M, Stenlid J, Jonsson BG, Ericson L. 2004. Spore deposition of wood-decaying fungi: importance of landscape composition. Ecography. 27:103–111.
  • Elías-Román RD, Guzmán-Plazola RA, Klopfenstein NB, Alvarado-Rosales D, Calderón-Zavala G, Mora-Aguilera JA, Kim MS, García-Espinosa R. 2013. Incidence and phylogenetic analyses of Armillaria spp. associated with root disease in peach orchards in the State of Mexico, Mexico. Forest Pathol. 43:390–401.
  • Elías-Román RD, Medel-Ortiz R, Alvarado-Rosales D, Hanna JW, Ross-Davis AL, Kim M-S, Klopfenstein NB. 2018. Armillaria mexicana, a newly described species from Mexico. Mycologia. 110:347–360.
  • Ellison CE, Hall C, Kowbel D, Welch J, Brem RB, Glass NL, Taylor JW. 2011. Population genomics and local adaptation in wild isolates of a model microbial eukaryote. Proc Natl Acad Sci USA. 108:2831–2836.
  • Enderle R, Sander F, Metzler B. 2017. Temporal development of collar necroses and butt rot in association with ash dieback. iForest. 10:529–536.
  • Ferguson BA, Dreisbach TA, Parks CG, Filip GM, Schmitt CL. 2003. Coarse-scale population structure of pathogenic Armillaria species in a mixed-conifer forest in the Blue Mountains of northeast Oregon. Can J For Res. 33:612–623.
  • Fischer MC, Rellstab C, Leuzinger M, Roumet M, Gugerli F, Shimizu KK, Holderegger R, Widmer A. 2017. Estimating genomic diversity and population differentiation - an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri. BMC Genomics. 18:69.
  • Fleming RL, Mossa DS, Marek GT. 2005. Upland black spruce stand development 17 years after cleaning and precommercial thinning. For Chron. 81:31–41.
  • Ford KL, Baumgartner K, Henricot B, Bailey AM, Foster GD. 2015. A reliable in vitro fruiting system for Armillaria mellea for evaluation of Agrobacterium tumefaciens transformation vectors. Fungal Biol. 119:859–869.
  • Ford KL, Baumgartner K, Henricot B, Bailey AM, Foster GD. 2016. A native promoter and inclusion of an intron is necessary for efficient expression of GFP or mRFP in Armillaria mellea. Sci Rep. 6:29226.
  • Ford KL, Bourquin FHM 2018. A CRISPER way to edit the honey fungus. GARNet Gene Editing Workshop, University of Bristol.
  • Ford KL, Henricot B, Baumgartner K, Bailey AM, Foster GD. 2017. A faster inoculation assay for Armillaria using herbaceous plants. J Horticult Sci Biotechnol. 92:39–47.
  • Gerlach JP, Reich PB, Puettmann K, Baker T. 1997. Species, diversity, and density affect tree seedling mortality from Armillaria root rot. Can J For Res. 27:1509–1512.
  • Gregory SC, Rishbeth J, Shaw CG III. 1991. Pathogenicity and virulence. In: Shaw CG III, Kile GA, editors. Armillaria root disease. Agricultural Handbook No 691. Washington (DC): USDA Forest Service; p. 76–87.
  • Gross A, Holdenrieder O, Pautasso M, Queloz V, Sieber TN. 2014. Hymenoscyphus pseudoalbidus, the causal agent of European ash dieback. Mol Plant Pathol. 15:5–21.
  • Guichoux E, Lagache L, Wagner S, Chaumeil P, Leger P, Lepais O, Lepoittevin C, Malausa T, Revardel E, Salin F, et al. 2011. Current trends in microsatellite genotyping. Mol Ecol Resour. 11:591–611.
  • Guillaumin JJ. 2005. Chapter 5, Systèmes sexuels et cycles caryologiques. In: Guillaumin JJ, Legrand P, Lung-Escarmant B, editors. L’armillaire et le pourridié-agaric des végétaux ligneux. Paris: INRA; p. 85–101.
  • Guillaumin JJ, Botton B. 2005. Chapter 9, Ontogénie des armillaires. In: Guillaumin JJ, Legrand P, Lung-Escarmant B, editors. L’armillaire et le pourridié-agaric des végétaux ligneux. Paris: INRA; p. 151–175.
  • Guillaumin JJ, Legrand P. 2005. Chapter 10, Cycle infectieux de l’armillaire - Stratégie biologique des espèces européennes. In: Guillaumin JJ, Legrand P, Lung-Escarmant B, editors. L’armillaire et le pourridié-agaric des végétaux ligneux. Paris: INRA; p. 177–201.
  • Guillaumin JJ, Legrand P. 2013. Armillaria root rots. In: Gonthier P, Nicolotti G, editors. Infectious forest diseases. Wallingford: CABI Publishing; p. 159–177.
  • Guillaumin JJ, Legrand P, Lung-Escarmant B, Botton B. 2005. L’armillaire et le pourridié-agaric des végétaux ligneux. Paris: INRA.
  • Guillaumin JJ, Lung B, Romagnesi H, Marxmüller H, Lamoure D, Durrieu G, Berthelay S, Mohammed C. 1985. Systématique des Armillaires du groupe mellea. Conséquences phytopathologiques. Eur J Forest Pathol. 15:268–277.
  • Guillaumin JJ, Mohammed C, Anselmi N, Courtecuisse R, Gregory SC, Holdenrieder O, Intini M, Lung B, Marxmüller H, Morrison DJ, et al. 1993. Geographical distribution and ecology of the Armillaria species in western Europe. Eur J Forest Pathol. 23:321–341.
  • Guo T, Wang HC, Xue WQ, Zhao J, Yang ZL. 2016. Phylogenetic analyses of Armillaria reveal at least 15 phylogenetic lineages in China, seven of which are associated with cultivated Gastrodia elata. PLOS One. 11:e0154794.
  • Haavik LJ, Billings SA, Guldin JM, Stephen FM. 2015. Emergent insects, pathogens and drought shape changing patterns in oak decline in North America and Europe. For Ecol Manage. 354:190–205.
  • Hanewinkel M, Cullmann DA, Schelhaas M-J, Nabuurs G-J, Zimmermann NE. 2012. Climate change may cause severe loss in the economic value of European forest land. Nat Clim Change. 3:203–207.
  • Harrington TC, Wingfield BD. 1995. A PCR-based identification method for species of Armillaria. Mycologia. 87:280–288.
  • Harrington TC, Worrall JJ, Baker FA. 1992. Armillaria. In: Singleton LL, Mihail JD, Rush CM, editors. Methods for research on soilborne phytopathogenic fungi. St. Paul (MN): APS Press; p. 81–85.
  • Hasegawa E, Ota Y, Hattori T, Kikuchi T. 2010. Sequence-based identification of Japanese Armillaria species using the elongation factor-1 alpha gene. Mycologia. 102:898–910.
  • Hasegawa E, Ota Y, Hattori T, Sahashi N, Kikuchi T. 2011. Ecology of Armillaria species on conifers in Japan. Forest Pathol. 41:429–437.
  • Heinzelmann R, Croll D, Zoller S, Sipos G, Münsterkötter M, Güldener U, Rigling D. 2017a. High-density genetic mapping identifies the genetic basis of a natural colony morphology mutant in the root rot pathogen Armillaria ostoyae. Fungal Genet Biol. 108:44–54.
  • Heinzelmann R, Prospero S, Rigling D. 2017b. Virulence and stump colonization ability of Armillaria borealis on norway spruce seedlings in comparison to sympatric Armillaria species. Plant Dis. 101:470–479.
  • Heinzelmann R, Prospero S, Rigling D. 2018. Frequent diploidisation of haploid Armillaria ostoyae strains in an outdoor inoculation experiment. Fungal Biol. 122:147–155.
  • Heinzelmann R, Rigling D. 2016. Mycelial fan formation of three sympatric Armillaria species on excised stem segments of Picea abies. Forest Pathol. 46:187–199.
  • Heinzelmann R, Rigling D, Prospero S. 2012. Population genetics of the wood-rotting basidiomycete Armillaria cepistipes in a fragmented forest landscape. Fungal Biol. 116:985–994.
  • Hewitt G. 2000. The genetic legacy of the Quaternary ice ages. Nature. 405:907–913.
  • Holuša J, Lubojacký J, Čurn V, Tonka T, Lukášová K, Horák J. 2018. Combined effects of drought stress and Armillaria infection on tree mortality in Norway spruce plantations. For Ecol Manage. 427:434–445.
  • Hood IA, Petrini LE, Gardner JF. 2008. Colonisation of woody material in Pinus radiata plantations by Armillaria novae-zelandiae basidiospores. Australas Plant Path. 37:347–352.
  • Hood IA, Ramsfield TD. 2016. Armillaria aotearoa species nova. N Z J For Sci. 46:2.
  • Horsley SB, Long RP, Bailey SW, Hallett RA, Wargo PM. 2002. Health of eastern North American sugar maple forests and factors affecting decline. North J Appl For. 19:34–44.
  • Husson C, Cael O, Grandjean JP, Nageleisen LM, Marçais B. 2012. Occurrence of Hymenoscyphus pseudoalbidus on infected ash logs. Plant Pathol. 61:889–895.
  • Iason GR, Taylor J, Helfer S. 2018. Community-based biotic effects as determinants of tree resistance to pests and pathogens. For Ecol Manage. 417:301–312.
  • Keča N, Klopfenstein NB, Kim MS, Solheim H, Woodward S. 2015. Initial characterization of an unidentified Armillaria isolate from Serbia using LSU-IGS1 and TEF-1-alpha genes. Forest Pathol. 45:120–126.
  • Kile GA. 1983. Identification of genotypes and the clonal development of Armillaria luteobubalina (Watling & Kile) in eucalypt forests. Aust J Bot. 31:657–671.
  • Kile GA, Guillaumin JJ, Mohammed C, Watling R. 1994. Biogeography and pathology of Armillaria. In: Johansson M, Stenlid J, editors. Proceedings of the 8th International Conference on Root and Butt Rots, Wik, Sweden, and Haikko, Finland, 9-16 August 1993. Upsala: Swedish University of Agricultural Sciences; p. 411–436.
  • Kim MS, Klopfenstein NB. 2011. Molecular Identification of Armillaria gallica from the Niobrara Valley Preserve in Nebraska. J Phytopathol. 159:69–71.
  • Kim MS, Klopfenstein NB, Hanna JW, McDonald GI. 2006. Characterization of North American Armillaria species: genetic relationships determined by ribosomal DNA sequences and AFLP markers. Forest Pathol. 36:145–164.
  • Kim MS, Klopfenstein NB, McDonald GI, Arumuganathan K, Vidaver AK. 2001. Use of flow cytometry, fluorescence microscopy, and PCR-based techniques to assess intraspecific and interspecific matings of Armillaria species. Mycol Res. 105:153–163.
  • Kim MS, Klopfenstein NB, McDonald GI, Arumuganathan K, Vidaver LK. 2000. Characterization of North American Armillaria species by nuclear DNA content and RFLP analysis. Mycologia. 92:874–883.
  • Klopfenstein NB, Kim MS, Hanna JW, Richardson BA, Lundquist JE 2009. Approaches to predicting potential impacts of climate change on forest disease: an example with Armillaria root disease. Fort Collins (CO): U.S. Department of Agriculture, Forest Service, Rocky Mountain Research Station. Research Paper RMRS-RP-76.
  • Klopfenstein NB, Stewart JE, Ota Y, Hanna JW, Richardson BA, Ross-Davis AL, Elías-Román RD, Korhonen K, Keča N, Iturritxa E, et al. 2017. Insights into the phylogeny of Northern Hemisphere Armillaria: neighbor-net and Bayesian analyses of translation elongation factor 1-α gene sequences. Mycologia. 109:75–91.
  • Koch RA, Wilson AW, Séné O, Henkel TW, Aime MC. 2017. Resolved phylogeny and biogeography of the root pathogen Armillaria and its gasteroid relative, Guyanagaster. BMC Evol Biol. 17:33.
  • Kombrink A, Thomma BPHJ. 2013. LysM effectors: secreted proteins supporting fungal life. PLOS Pathog. 9:e1003769.
  • Korhonen K. 1978. Interfertility and clonal size in the Armillariella mellea complex. Karstenia. 18:31–42.
  • Kromroy KW, Blanchette RA, Grigal DF. 2005. Armillaria species on small woody plants, small woody debris, and root fragments in red pine stands. Can J For Res. 35:1487–1495.
  • Kubiak K, Zolciak A, Damszel M, Lech P, Sierota Z. 2017. Armillaria pathogenesis under climate changes. Forests. 8:100.
  • Kües U, Nelson DR, Liu C, Yu GJ, Zhang JH, Li JQ, Wang XC, Sun H. 2015. Genome analysis of medicinal Ganoderma spp. with plant-pathogenic and saprotrophic life-styles. Phytochemistry. 114:18–37.
  • Kwasna H, Szynkiewicz-Wronek A. 2018. Culturable microfungi inhibitory to Armillaria rhizomorph formation from Fagus sylvatica stump roots and soil. J Phytopathol. 166:314–323.
  • La Porta N, Capretti P, Thomsen IM, Kasanen R, Hietala AM, Von Weissenberg K. 2008. Forest pathogens with higher damage potential due to climate change in Europe. Can J Plant Pathol. 30:177–195.
  • Labbé F, Fontaine MC, Robin C, Dutech C. 2017a. Genetic signatures of variation in population size in a native fungal pathogen after the recent massive plantation of its host tree. Heredity. 119:402–410.
  • Labbé F, Lung-Escarmant B, Fievet V, Soularue J-P, Laurent C, Robin C, Dutech C. 2017b. Variation in traits associated with parasitism and saprotrophism in a fungal root-rot pathogen invading intensive pine plantations. Fungal Ecol. 26:99–108.
  • Labbé F, Marçais B, Dupouey JL, Belouard T, Capdevielle X, Piou D, Robin C, Dutech C. 2015. Pre-existing forests as sources of pathogens? The emergence of Armillaria ostoyae in a recently planted pine forest. For Ecol Manage. 357:248–258.
  • Legrand P, Ghahari S, Guillaumin -J-J. 1996. Occurrence of genets of Armillaria spp. in four mountain forests in Central France: the colonization strategy of Armillaria ostoyae. New Phytol. 133:321–332.
  • Lehtijarvi A, Dogmus-Lehtijarvi HT, Kaya AGA, Unal S, Woodward S. 2017. Armillaria ostoyae in managed coniferous forests in Kastamonu in Turkey. Forest Pathol. 47:e12364.
  • Lenz HD, Bartha B, Strasser L, Lemme H. 2016. Development of ash dieback in south-eastern Germany and the increasing occurrence of secondary pathogens. Forests. 7:41.
  • Lima MLA, Asai T, Capelari M. 2008. Armillaria paulensis: a new South American species. Mycol Res. 112:1122–1128.
  • Loo J. 2009. Ecological impacts of non-indigenous invasive fungi as forest pathogens. Biol Invasions. 11:81–96.
  • Lung-Escarmant B, Guyon D. 2004. Temporal and spatial dynamics of primary and secondary infection by Armillaria ostoyae in a Pinus pinaster plantation. Phytopathology. 94:125–131.
  • Maphosa L, Wingfield BD, Coetzee MPA, Mwenje E, Wingfield MJ. 2006. Phylogenetic relationships among Armillaria species inferred from partial elongation factor 1-alpha DNA sequence data. Australas Plant Path. 35:513–520.
  • Marçais B, Breda N. 2006. Role of an opportunistic pathogen in the decline of stressed oak trees. J Ecol. 94:1214–1223.
  • Marçais B, Husson C, Godart L, Caël O. 2016. Influence of site and stand factors on Hymenoscyphus fraxineus-induced basal lesions. Plant Pathol. 65:1452–1461.
  • Matheny PB, Curtis JM, Hofstetter V, Aime MC, Moncalvo JM, Ge ZW, Yang ZL, Slot JC, Ammirati JF, Baroni TJ, et al. 2006. Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia. 98:982–995.
  • May TW. 2017. Report of the Nomenclature Committee for Fungi – 20. Taxon. 66:483–495.
  • Mayden RL. 1997. A hierarchy of species concepts: the denouement in the saga of the species problem. In: Claridge MF, Dawah HA, Wilson MR, editors. Species: the units of diversity. London (New York): Chapman & Hall; p. 381–423.
  • Mesanza N, Iturritxa E, Patten CL. 2016. Native rhizobacteria as biocontrol agents of Heterobasidion annosum s.s. and Armillaria mellea infection of Pinus radiata. Biol Control. 101:8–16.
  • Mesanza N, Patten CL, Iturritxa E. 2017. Distribution and characterization of Armillaria complex in Atlantic forest ecosystems of Spain. Forests. 8:235.
  • Metslaid M, Granhus A, Scholten J, Fjeld D, Solheim H. 2018. Long-term effects of single-tree selection on the frequency and population structure of root and butt rot in uneven-sized Norway spruce stands. For Ecol Manage. 409:509–517.
  • Misiek M, Hoffmeister D. 2012. Sesquiterpene aryl ester natural products in North American Armillaria species. Mycol Prog. 11:7–15.
  • Misiek M, Williams J, Schmich K, Huttel W, Merfort I, Salomon CE, Aldrich CC, Hoffmeister D. 2009. Structure and Cytotoxicity of Arnamial and Related Fungal Sesquiterpene Aryl Esters. J Nat Prod. 72:1888–1891.
  • Morrison DJ. 2004. Rhizomorph growth habit, saprophytic ability and virulence of 15 Armillaria species. Forest Pathol. 34:15–26.
  • Morrison DJ. 2011. Epidemiology of Armillaria root disease in Douglas-fir plantations in the cedar-hemlock zone of the southern interior of British Columbia. Forest Pathol. 41:31–40.
  • Morrison DJ, Chu D, Johnson ALS. 1985. Species of Armillaria in British-Columbia. Can J Plant Pathol. 7:242–246.
  • Morrison DJ, Cruickshank MG, Lalumiere A. 2014. Control of laminated and Armillaria root diseases by stump removal and tree species mixtures: amount and cause of mortality and impact on yield after 40 years. For Ecol Manage. 319:75–98.
  • Morrison DJ, Mallett K. 1996. Silvicultural management of Armillaria root disease in western Canadian forests. Can J Plant Pathol. 18:194–199.
  • Motta JJ, Korhonen K. 1986. A note on Armillaria mellea and Armillaria bulbosa from the Middle Atlantic States. Mycologia. 78:471–474.
  • Nevalainen S. 2017. Comparison of damage risks in even- and uneven-aged forestry in Finland. Silva Fenn. 51:1741.
  • Nguyen D, Castagneyrol B, Bruelheide H, Bussotti F, Guyot V, Jactel HE, Jaroszewicz B, Valladares F, Stenlid J, Boberg J. 2016. Fungal disease incidence along tree diversity gradients depends on latitude in European forests. Ecol Evol. 6:2426–2438.
  • Norris CE, Hogg KE, Maynard DG, Curran MP. 2014. Stumping trials in British Columbia - organic matter removal and compaction effects on tree growth from seedlings to midrotation stands. Can J For Res. 44:1402–1418.
  • Ota Y, Matsushita N, Nagasawa E, Terashita T, Fukuda K, Suzuki K. 1998. Biological species of Armillaria in Japan. Plant Dis. 82:537–543.
  • Park KH, Oh SY, Park MS, Kim MS, Klopfenstein NB, Kim NK, Park JY, Kim JJ, Han SK, Lee JK, et al. 2018. Re-evaluation of Armillaria and Desarmillaria in South Korea based on ITS/tef1 sequences and morphological characteristics. Forest Pathol. (in press).
  • Pavlov IN. 2015. Biotic and abiotic factors as causes of coniferous forests dieback in Siberia and Far East. Contemp Probl Ecol. 8:440–456.
  • Pearce MH, Malajczuk N. 1990. Factors affecting growth of Armillaria luteobubalina rhizomorphs in soil. Mycol Res. 94:38–48.
  • Pildain MB, Coetzee MPA, Rajchenberg M, Petersen RH, Wingfield MJ, Wingfield BD. 2009. Molecular phylogeny of Armillaria from the Patagonian Andes. Mycol Prog. 8:181–194.
  • Pildain MB, Coetzee MPA, Wingfield BD, Wingfield MJ, Rajchenberg M. 2010. Taxonomy of Armillaria in the Patagonian forests of Argentina. Mycologia. 102:392–403.
  • Plomion C, Bastien C, Bogeat-Triboulot MB, Bouffier L, Dejardin A, Duplessis S, Fady B, Heuertz M, Le Gac AL, Le Provost G, et al. 2016. Forest tree genomics: 10 achievements from the past 10 years and future prospects. Ann For Sci. 73:77–103.
  • Power MWP, Ramsfield TD, Hood IA. 2008. Detection of Armillaria basidiospore dispersal. N Z Plant Prot. 61:35–40.
  • Prospero S, Cleary M. 2017. Effects of host variability on the spread of invasive forest diseases. Forests. 8:80.
  • Prospero S, Holdenrieder O, Rigling D. 2003a. Primary resource capture in two sympatric Armillaria species in managed Norway spruce forests. Mycol Res. 107:329–338.
  • Prospero S, Holdenrieder O, Rigling D. 2004. Comparison of the virulence of Armillaria cepistipes and Armillaria ostoyae on four Norway spruce provenances. Forest Pathol. 34:1–14.
  • Prospero S, Holdenrieder O, Rigling D. 2006. Rhizomorph production and stump colonization by co-occurring Armillaria cepistipes and Armillaria ostoyae: an experimental study. Forest Pathol. 36:21–31.
  • Prospero S, Lung-Escarmant B, Dutech C. 2008. Genetic structure of an expanding Armillaria root rot fungus (Armillaria ostoyae) population in a managed pine forest in southwestern France. Mol Ecol. 17:3366–3378.
  • Prospero S, Rigling D, Holdenrieder O. 2003b. Population structure of Armillaria species in managed Norway spruce stands in the Alps. New Phytol. 158:365–373.
  • Puebla O, Bermingham E, McMillan WO. 2012. On the spatial scale of dispersal in coral reef fishes. Mol Ecol. 21:5675–5688.
  • Qin GF, Zhao J, Korhonen K. 2007. A study on intersterility groups of Armillaria in China. Mycologia. 99:430–441.
  • Raffaele S, Kamoun S. 2012. Genome evolution in filamentous plant pathogens: why bigger can be better. Nat Rev Micro. 10:417–430.
  • Raziq F, Fox RTV. 2003. Comparisons between the in vitro and in vivo efficacies of potential fungal antagonists of Armillaria mellea. Biol Agric Hortic. 21:263–276.
  • Redfern DB, Filip GM. 1991. Inoculum and infection. In: Shaw CG III, Kile GA, editors. Armillaria root disease. Agricultural Handbook No 691. Washington (DC): USDA Forest Service; p. 48–61.
  • Reusch TBH, Hukriede W, Stam WT, Olsen JL. 1999. Differentiating between clonal growth and limited gene flow using spatial autocorrelation of microsatellites. Heredity. 83:120–126.
  • Rishbeth J. 1970. The role of basidiospores in stump infection by Armillaria mellea. In: Tousson TA, Bega RV, Nelson PE, editors. Root diseases and soil-borne pathogens. Berkeley (CA): University of California Press; p. 141–146.
  • Rishbeth J. 1978. Effects of soil temperature and atmosphere on growth of Armillaria rhizomorphs. Trans Br Mycol Soc. 70:213–220.
  • Rishbeth J. 1985. Infection cycle of Armillaria and host response. Eur J Forest Pathol. 15:332–341.
  • Rishbeth J. 1988. Stump infection by Armillaria in first-rotation conifers. Eur J Forest Pathol. 18:401–408.
  • Rizzo DM, May G. 1994. Nuclear replacement during mating in Armillaria ostoyae (Basidiomycotina). Microbiology. 140:2115–2124.
  • Robene-Soustrade I, Lung-Escarmant B, Chauvin B, Germain R. 1998. Enzyme equipment in the Armillaria ostoyae-Pinus pinaster interaction: relation to host aggression. In: Delatour C, Marçais B, Guillaumin JJ, editors. Root and Butt Rots of Forest Trees - 9th International conference on root and butt rots. Paris: INRA; p. 301–310.
  • Roll-Hansen F. 1985. The Armillaria species in Europe - a literature review. Eur J Forest Pathol. 15:22–31.
  • Ross-Davis AL, Hanna JW, Kim MS, Klopfenstein NB. 2012. Advances toward DNA-based identification and phylogeny of North American Armillaria species using elongation factor-1 alpha gene. Mycoscience. 53:161–165.
  • Ross-Davis AL, Stewart JE, Hanna JW, Kim MS, Knaus BJ, Cronn R, Rai H, Richardson BA, McDonald GI, Klopfenstein NB. 2013. Transcriptome of an Armillaria root disease pathogen reveals candidate genes involved in host substrate utilization at the host-pathogen interface. Forest Pathol. 43:468–477.
  • Rousset F. 1997. Genetic differentiation and estimation of gene flow from F-statistics under isolation-by-distance. Genetics. 145:1219–1228.
  • Sánchez-Vallet A, Mesters JR, Thomma BPHJ. 2015. The battle for chitin recognition in plant-microbe interactions. FEMS Microbiol Rev. 39:171–183.
  • Seneviratne SI, Nicholls N, Easterling D, Goodess CM, Kanae S, Kossin J, Luo Y, Marengo J, McInnes K, Rahimi M, et al. 2012. Changes in climate extremes and their impacts on the natural physical environment. In: Field CB, Dahe Q, Stocker TF, Barros V, editors. Managing the risks of extreme events and disasters to advance climate change adaptation: special report of the intergovernmental panel on climate change. Cambridge: Cambridge University Press; p. 109–230.
  • Shaw CG III, Kile GA, editors. 1991. Armillaria root disease. Washington (DC): USDA Forest Service. (Agricultural Handbook No. 691).
  • Shaw CG III, Omdal DW, Ramsey-Kroll A, Roth LF. 2012. Inoculum reduction measures to manage Armillaria root disease in a severely infected stand of ponderosa pine in south-central Washington: 35-year results. West J Appl For. 27:25–29.
  • Sipos G, Prasanna AN, Walter MC, O’Connor E, Bálint B, Krizsán K, Kiss B, Hess J, Varga T, Slot J, et al. 2017. Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria. Nat Ecol Evol. 1:1931–1941.
  • Skovsgaard JP, Thomsen IM, Skovgaard IM, Martinussen T. 2010. Associations among symptoms of dieback in even-aged stands of ash (Fraxinus excelsior L.). Forest Pathol. 40:7–18.
  • Smith ML, Bruhn JN, Anderson JB. 1992. The fungus Armillaria bulbosa is among the largest and oldest living organisms. Nature. 356:428–431.
  • Solla A, Aguin O, Cubera E, Sampedro L, Mansilla JP, Zas R. 2011. Survival time analysis of Pinus pinaster inoculated with Armillaria ostoyae: genetic variation and relevance of seed and root traits. Eur J Plant Pathol. 130:477–488.
  • Soularue JP, Robin C, Desprez-Loustau ML, Dutech C. 2017. Short rotations in forest plantations accelerate virulence evolution in root-rot pathogenic fungi. Forests. 8:205.
  • Stoytchev I, Nerud F. 2000. Ligninolytic enzyme complex of Armillaria spp. Folia Microbiol. 45:248–250.
  • Sturrock RN. 2012. Climate change and forest diseases: using today’s knowledge to address future challenges. For Syst. 21:329–336.
  • Suzuki H, MacDonald J, Syed K, Salamov A, Hori C, Aerts A, Henrissat B, Wiebenga A, vanKuyk PA, Barry K, et al. 2012. Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize. BMC Genomics. 13:444.
  • Szewczyk W, Kwasna H, Behnke-Borowczyk J. 2016. Armillaria population in flood-plain forest of natural pedunculate oak showing oak decline. Pol J Environ Stud. 25:1253–1262.
  • Szwajkowska-Michalek L, Kwasna H, Lakomy P, Perkowski J. 2012. Inhibition of Armillaria and Heterobasidion growth by Penicillium adametzii isolated from Pinus sylvestris forest soil. Forest Pathol. 42:454–466.
  • Taylor JW, Jacobson DJ, Kroken S, Kasuga T, Geiser DM, Hibbett DS, Fisher MC. 2000. Phylogenetic species recognition and species concepts in fungi. Fungal Genet Biol. 31:21–32.
  • Termorshuizen AJ, Arnolds EJM. 1994. Geographical distribution of the Armillaria species in The Netherlands in relation to soil type and hosts. Eur J Forest Pathol. 24:129–136.
  • Timmermann V, Nagy NE, Hietala AM, Borja I, Solheim H. 2017. Progression of ash dieback in Norway related to tree age, disease history and regional aspects. Baltic For. 23:150–158.
  • Tomalak M. 2017. Parasitic association of the mycetophagous wood nematode, Bursaphelenchus fraudulentus with the honey fungus Armillaria ostoyae. Forest Pathol. 47:e12325.
  • Travadon R, Smith ME, Fujiyoshi P, Douhan GW, Rizzo DM, Baumgartner K. 2012. Inferring dispersal patterns of the generalist root fungus Armillaria mellea. New Phytol. 193:959–969.
  • Tsykun T, Rellstab C, Dutech C, Sipos G, Prospero S. 2017. Comparative assessment of SSR and SNP markers for inferring the population genetic structure of the common fungus Armillaria cepistipes. Heredity. 119:371–380.
  • Tsykun T, Rigling D, Nikolaychuk V, Prospero S. 2012. Diversity and ecology of Armillaria species in virgin forests in the Ukrainian Carpathians. Mycol Prog. 11:403–414.
  • Tsykun T, Rigling D, Prospero S. 2013. A new multilocus approach for a reliable DNA-based identification of Armillaria species. Mycologia. 105:1059–1076.
  • Turland NJ, Wiersema JH, Monro AM, Deng Y-F, Zhang L. 2017. XIX International Botanical Congress: report of congress action on nomenclature proposals. Taxon. 66:1234–1245.
  • Vayssier-Taussat M, Albina E, Citti C, Cosson JF, Jacques MA, Lebrun MH, Le Loir Y, Ogliastro M, Petit MA, Roumagnac P, et al. 2014. Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics. Front Cell Infect Microbiol. 4:29.
  • Volk TJ, Burdsall HHJ. 1995. A nomenclatural study of Armillaria and Armillariella species. Oslo: Fungiflora. (Synopsis Fungorum 8).
  • Vyse A, Cleary MR, Cameron IR. 2013. Tree species selection revisited for plantations in the Interior Cedar Hemlock zone of southern British Columbia. For Chron. 89:382–391.
  • Wargo PM. 1972. Defoliation-induced chemical changes in sugar maple roots stimulate growth of Armillaria mellea. Phytopathology. 62:1278–1283.
  • Wargo PM. 1996. Consequences of environmental stress on oak: predisposition to pathogens. Ann Sci For. 53:359–368.
  • Wargo PM, Harrington TC. 1991. Host stress and susceptibility. In: Shaw CG III, Kile GA, editors. Armillaria root disease. Agricultural Handbook No 691. Washington (DC): USDA Forest Service; p. 88–101.
  • Watling R, Kile GA, Burdsall HH. 1991. Chapter 1, Nomenclature, taxonomy and identification. In: Shaw CG III, Kile GA, editors. Armillaria root disease. Agricultural Handbook No 691. Washington (DC): USDA Forest Service; p. 1–9.
  • Whitlock MC, McCauley DE. 1999. Indirect measures of gene flow and migration: FST ≠ 1/(4Nm+1). Heredity. 82:117–125.
  • Wingfield BD, Ambler JM, Coetzee MPA, de Beer ZW, Duong TA, Joubert F, Hammerbacher A, McTaggart AR, Naidoo K, Nguyen HDT, et al. 2016. Draft genome sequences of Armillaria fuscipes, Ceratocystiopsis minuta, Ceratocystis adiposa, Endoconidiophora laricicola, E. polonica and Penicillium freii DAOMC 242723. IMA Fungus. 7:217–227.
  • Woods AJ, Heppner D, Kope HH, Burleigh J, Maclauchlan L. 2010. Forest health and climate change: a British Columbia perspective. For Chron. 86:412–422.
  • Worrall JJ, Sullivan KF, Harrington TC, Steimel JP. 2004. Incidence, host relations and population structure of Armillaria ostoyae in Colorado campgrounds. For Ecol Manage. 192:191–206.
  • Wright S. 1969. Evolution and the genetics of populations. Volume 2. Theory of gene frequencies. Chicago: The University of Chicago Press.
  • Xing R, Gao QB, Zhang FQ, Li YH, Fu PC, Zhang JH, Wang JL, Khan G, Chen SL. 2014. Genetic diversity and population structure of Armillaria luteovirens (Physalacriaceae) in Qinghai-Tibet Plateau revealed by SSR markers. Biochem Syst Ecol. 56:1–7.

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