Immunity to stripe rust in wheat: A case study of a hypersensitive-response (HR)- independent resistance to Puccinia striiformis f. sp. tritici in Avocet-Yr15

References

• Alcázar R, Marco F, Cuevas JC, Patron M, Ferrando A, Carrasco P, Tiburcio AF, Altabella T. 2006. Involvement of polyamines in plant response to abiotic stress. Biotechnol Lett. 28:1867–197. doi:https://doi.org/10.1007/s10529-006-9179-3.
   PubMed Web of Science ®Google Scholar
• An LZ, Wang XL. 1997. Changes in polyamine contents and arginine decarboxylase activity in wheat leaves exposed to ozone and hydrogen fluoride. J Plant Physiol. 150:184–187. doi:https://doi.org/10.1016/S0176-1617(97)80200-3.
   Web of Science ®Google Scholar
• An T, Cai Y, Zhao S, Zhou J, Song B, Bux H, Qi X. 2016. Brachypodium distachyon T-DNA insertion lines: a model pathosystem to study nonhost resistance to wheat stripe rust. Sci Rep. 6:1–9. doi:https://doi.org/10.1038/srep25510.
   PubMed Web of Science ®Google Scholar
• Bardou P, Mariette J, Escudié F, Djemiel C, Klopp C. 2014. jvenn: an interactive Venn diagram viewer. BMC Bioinformatics. 15:293. doi:https://doi.org/10.1186/1471-2105-15-293.
   PubMed Web of Science ®Google Scholar
• Beddow JM, Pardey PG, Chai Y, Hurley TM, Kriticos DJ, Braun HJ, Park RF, Cuddy WS, Yonow T. 2015. Research investment implications of shifts in the global geography of wheat stripe rust. Nat Plants. 1:1–5. doi:https://doi.org/10.1038/nplants.2015.132.
   Web of Science ®Google Scholar
• Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics. 30:2114–2120. doi:https://doi.org/10.1093/bioinformatics/btu170
   Google Scholar
• Bolser D, Staines DM, Pritchard E, Kersey P. 2016. Ensembl Plants: Integrating tools for visualizing, mining, and analyzing plant genomics data. Methods Mol Biol. 1374:115–140.
   PubMedGoogle Scholar
• Brar GS, Fetch T, McCallum BD, Hucl PJ, Kutcher HR. 2019. Virulence dynamice and breeding for resistance to stripe, stem, and leaf rust in Canada since 2000. Plant Dis. 103:2981–2995. doi:https://doi.org/10.1094/PDIS-04-19-0866-FE.
   PubMed Web of Science ®Google Scholar
• Cantu D, Segovia V, MacLean D, Bayles R, Chen X, Kamoun S, Dubcovsky J, Saunders DGO, Uauy C. 2013. Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors. BMC Genomics. 14:270. doi:https://doi.org/10.1186/1471-2164-14-270.
   PubMed Web of Science ®Google Scholar
• Chen X. 2013. Review Article: high-temperature adult-plant resistance, key for sustainable control of stripe rust. Am J Plant Sci. 04:608–627. doi:https://doi.org/10.4236/ajps.2013.43080.
   Google Scholar
• Chen X, Coram T, Huang X, Wang M, Dolezal A. 2013. Understanding molecular mechanisms of durable and non-durable resistance to stripe rust in wheat using a transcriptomics approach. Curr Genom. 14:111–126. doi:https://doi.org/10.2174/1389202911314020004.
   PubMed Web of Science ®Google Scholar
• Chen XM. 2014. Integration of cultivar resistance and fungicide application for control of wheat stripe rust. Can J Plant Pathol. 36:311–326. doi:https://doi.org/10.1080/07060661.2014.924560.
   Web of Science ®Google Scholar
• Cheng Y, Zhang H, Yao J, Han Q, Wang X, Huang L, Kang Z. 2013. Cytological and molecular characterization of non-host resistance in Arabidopsis thaliana against wheat stripe rust. Plant Physiol Biochem. 62:11–18. doi:https://doi.org/10.1016/j.plaphy.2012.10.014.
   PubMed Web of Science ®Google Scholar
• Cheng Y, Zhang H, Yao J, Wang X, Xu J, Han Q, Wei G, Huang L, Kang Z. 2012. Characterization of non-host resistance in broad bean to the wheat stripe rust pathogen. BMC Plant Biol. 12:96. doi:https://doi.org/10.1186/1471-2229-12-96.
   PubMed Web of Science ®Google Scholar
• Dobon A, Bunting DCE, Cabrera-Quio LE, Uauy C, Saunders DGO. 2016. The host-pathogen interaction between wheat and yellow rust induces temporally coordinated waves of gene expression. BMC Genomics. 17:380. doi:https://doi.org/10.1186/s12864-016-2684-4.
   PubMed Web of Science ®Google Scholar
• Fauteux F, Rémus-Borel W, Menzies JG, Bélanger RR. 2005. Silicon and plant disease resistance against pathogenic fungi. FEMS Microbiol Lett. 249:1–6. doi:https://doi.org/10.1016/j.femsle.2005.06.034.
   PubMed Web of Science ®Google Scholar
• Ge SX, Jung D, Yao R. 2019. ShinyGO: a graphical enrichment tool for animals and plants. Bioinformatics. 36:2628–2629. doi:https://doi.org/10.1093/bioinformatics/btz931.
   Web of Science ®Google Scholar
• Ghanmi D, McNally DJ, Benhamou N, Menzies JG, Bélanger RR. 2004. Powdery mildew of Arabidopsis thaliana: a pathosystem for exploring the role of silicon in plant-microbe interactions. Physiol Mol Plant Path. 64:189–199. doi:https://doi.org/10.1016/j.pmpp.2004.07.005.
   Web of Science ®Google Scholar
• Govrin EM, Levine A. 2000. The hypersensitive response facilitates plant infection by the necrotrophic pathogen Botrytis cinerea. Curr Biol. 10:751–757. doi:https://doi.org/10.1016/S0960-9822(00)00560-1.
   PubMed Web of Science ®Google Scholar
• Hammond-Kosack KE, Jones JDG. 1996. Resistance gene-dependent plant defense responses. Plant Cell. 8:1773–1791. doi:https://doi.org/10.1105/tpc.8.10.1773.
   PubMed Web of Science ®Google Scholar
• Jones JDG, Dangl L. 2006. The plant immune system. Nature. 444:323–329. doi:https://doi.org/10.1038/nature05286.
   PubMed Web of Science ®Google Scholar
• Klymiuk V, Yaniv E, Huang L, Raats D, Fatiukha A, Chen S, Feng L, Frenkel Z, Krugman T, Lidzbarsky G, et al. 2018. Cloning of the wheat Yr15 resistance gene sheds light on the plant tandem kinase-pseudokinase family. Nat Commun. 9:1–12. doi:https://doi.org/10.1038/s41467-018-06138-9.
   PubMed Web of Science ®Google Scholar
• McIntosh R, Mu J, Han D, Kang Z. 2018. Wheat stripe rust resistance gene Yr24/Yr26: a retrospective review. Crop J. 6:321–329. doi:https://doi.org/10.1016/j.cj.2018.02.001.
   Google Scholar
• McNeal FH, Konzak CF, Smith EP, Tate WS, Russell TS. 1971. A uniform system for recording and processing cereal research data. Washington: USDA-ARS Bull; p. 34–121.
   Google Scholar
• Melotto M, Zhang L, Oblessuc PR, He SY. 2017. Stomatal defense a decade later. Plant Physiol. 174:561–571. doi:https://doi.org/10.1104/pp.16.01853.
   PubMed Web of Science ®Google Scholar
• Peng JH, Fahima T, Röder MS, Huang QY, Dahan A, Li YC, Grama NE. 2000. High-density molecular map of chromosome region harboring stripe-rust resistance genes YrH52 and Yr15 derived from wild emmer wheat, Triticum dicoccoides. Genetica. 109:199–210. doi:https://doi.org/10.1023/A:1017573726512.
   PubMed Web of Science ®Google Scholar
• Qie Y, Liu Y, Wang M, Li X, See DR, An D, Chen X. 2019. Development, validation, and re-selection of wheat lines with pyramided genes Yr64 and Yr15 linked on the short arm of chromosome 1B for resistance to stripe rust. Plant Dis. 103:51–58. doi:https://doi.org/10.1094/PDIS-03-18-0470-RE.
   PubMed Web of Science ®Google Scholar
• Seifi HS, Curvers K, De Vleesschauwer D, Delaere I, Aziz A, Höfte M. 2013a. Concurrent overactivation of the cytosolic glutamine synthetase and the GABA shunt in the ABA-deficient sitiens mutant of tomato leads to resistance against Botrytis cinerea. New Phytol. 199:490–504. doi:https://doi.org/10.1111/nph.12283.
   PubMed Web of Science ®Google Scholar
• Seifi HS, Shelp BJ. 2019. Spermine differentially refines plant defense responses against biotic and abiotic stresses. Front Plant Sci. 10:117. doi:https://doi.org/10.3389/fpls.2019.00117.
   PubMed Web of Science ®Google Scholar
• Seifi HS, Van Bockhaven J, Angenon G, Höfte M. 2013b. Glutamate metabolism in plant disease and defense: friend or foe? Mol Plant Microbe Interact. 26:475–485. doi:https://doi.org/10.1094/MPMI-07-12-0176-CR.
   PubMed Web of Science ®Google Scholar
• Serajazari M, Hilker B, Sing Sidhu H, Follings J, Navabi A. 2018. Host-pathogen interaction in the winter wheat-stripe rust pathosystem in Ontario. In: 4th Canadian Wheat Symposium and 9th Canadian Workshop on FHB. Winnipeg, Manitoba, Canada.
   Google Scholar
• Singh RP, Nelson JC, Sorrells ME. 2000. Mapping Yr28 and other genes for resistance to stripe rust in wheat. Crop Sci. 40:1148–1155. doi:https://doi.org/10.2135/cropsci2000.4041148x.
   Web of Science ®Google Scholar
• Solh M, Nazari K, Tadesse W, Wellings CR. 2012. The growing threat of stripe rust worldwide. In: Borlaug Global Rust Initiative (BGRI) conference, Beijing, China. p. 1–4
   Google Scholar
• Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L. 2012. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc. 7:562–578. doi:https://doi.org/10.1038/nprot.2012.016.
   PubMed Web of Science ®Google Scholar
• Van Bockhaven J, Spíchal L, Novák O, Strnad M, Asano T, Kikuchi S, Höfte M, De Vleesschauwer D. 2015. Silicon induces resistance to the brown spot fungus Cochliobolus miyabeanus by preventing the pathogen from hijacking the rice ethylene pathway. New Phytol. 206:761–773. doi:https://doi.org/10.1111/nph.13270.
   PubMed Web of Science ®Google Scholar
• Xi K, Kumar K, Holtz MD, Turkington TK, Chapman B. 2015. Understanding the development and management of stripe rust in central Alberta. Can J Plant Path. 37:21–39. doi:https://doi.org/10.1080/07060661.2014.981215.
   Web of Science ®Google Scholar
• Yu X, Wang X, Wang C, Chen X, Qu Z, Yu X, Han Q, Zhao J, Guo J, Huang L, et al. 2010. Wheat defense genes in fungal (Puccinia striiformis) infection. Funct Integr Genomics. 10:227–239. doi:https://doi.org/10.1007/s10142-010-0161-8.
   PubMed Web of Science ®Google Scholar
• Yu Y, Jin C, Sun C, Wang J, Ye Y, Lu L, Lin X. 2015. Elevation of arginine decarboxylase-dependent putrescine production enhances aluminum tolerance by decreasing aluminum retention in root cell walls of wheat. J Hazard Mater. 299:280–288.
   PubMed Web of Science ®Google Scholar
• Zeng QD, Han DJ, Wang QL, Yuan FP, Wu JH, Zhang L, Wang XJ, Huang LL, Chen XM, Kang ZS. 2014. Stripe rust resistance and genes in Chinese wheat cultivars and breeding lines. Euphytica. 196:271–284. doi:https://doi.org/10.1007/s10681-013-1030-z.
   Web of Science ®Google Scholar