Mapping stem rust resistance loci effective in Kenya in Canadian spring wheat (Triticum aestivum L.) lines ‘AAC Prevail’ and ‘BW961’

References

• Alaux M, Rogers J, Letellier T, Flores R, Alfama F, Pommier C, Mohellibi N, Durand S, Kimmel E, Michotey C, et al. 2018. Linking the international wheat genome sequencing consortium bread wheat reference genome sequence to wheat genetic and phenomic data. Genome Biol. 19(1):111. doi:https://doi.org/10.1186/s13059-018-1491-4
   PubMed Web of Science ®Google Scholar
• Allen AM, Barker GL, Berry ST, Coghill JA, Gwilliam R, Kirby S, Robinson P, Brenchley RC, D’Amore R, McKenzie N, et al. 2011. Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.). Plant Biotechnol J. 9(9):1086–274. doi:https://doi.org/10.1111/j.1467-7652.2011.00628.x
   PubMed Web of Science ®Google Scholar
• Bajgain P, Rouse M, Bhavani S, Anderson J. 2015. QTL mapping of adult plant resistance to Ug99 stem rust in the spring wheat population RB07/MN06113-8. Mol Breeding. 35(8):1–15. doi:https://doi.org/10.1007/s11032-015-0362-x
   Web of Science ®Google Scholar
• Bariana HS, Hayden MJ, Ahmed NU, Bell JA, Sharp PJ, McIntosh RA. 2001. Mapping of durable adult plant and seedling resistances to stripe rust and stem rust diseases in wheat. Aust J Agr Res. 52(11–12):1247–1255. doi:https://doi.org/10.1071/AR01040
   Google Scholar
• Bernardo AN, Bowden RL, Rouse MN, Newcomb MS, Marshall DS, Bai G. 2013. Validation of molecular markers for new stem rust resistance genes in U.S. hard winter wheat. Crop Sci. 53(3):755–764. doi:https://doi.org/10.2135/cropsci2012.07.0446
   Web of Science ®Google Scholar
• Bhavani S, Hodson DP, Huerta-Espino J, Randhawa MS, Singh RP. 2019. Progress in breeding for resistance to Ug99 and other races of the stem rust fungus in CIMMYT wheat germplasm. Front Agr Sci Eng. 6(3):210–224. doi:https://doi.org/10.15302/J-FASE-2019268
   Web of Science ®Google Scholar
• Bhavani S, Singh RP, Argillier O, Huerta-Espino J, Singh S, Njau P. 2011. Mapping of durable adult plant stem rust resistance in six CIMMYT wheats to Ug99 group of races. In: McIntosh R, editor. Proceedings of the borlaug global rust initiative 2011 technical workshop. Saint Paul (Minnesota, Ithaca): Borlaug Global Rust Initiative; p. 43–53, June 13–16.
   Google Scholar
• Bokore FE, Knox RE, Cuthbert RD, Pozniak CJ, McCallum BD, N’Diaye A, DePauw RM, Campbell HL, Munro C, Singh A, et al. 2020. Mapping quantitative trait loci associated with leaf rust resistance in five spring wheat populations using single nucleotide polymorphism markers. PLoS ONE. 15(4):e0230855. doi:https://doi.org/10.1371/journal.pone.0230855
   PubMed Web of Science ®Google Scholar
• Chemayek B, Bansal UK, Qureshi N, Zhang P, Wagoire WW, Bariana HS. 2017. Tight repulsion linkage between Sr36 and Sr39 was revealed by genetic, cytogenetic and molecular analyses. Theor Appl Genet. 130(3):587–595. doi:https://doi.org/10.1007/s00122-016-2837-5
   PubMed Web of Science ®Google Scholar
• Dean R, Van Kan JAL, Pretorius ZA, Hammond-Kosack KE, Di Pietro A, Spanu PD, Rudd JJ, Dickman M, Kahmann R, Ellis J, et al. 2012. The top 10 fungal pathogens in molecular plant pathology. Mol Plant Path. 13(4):414–430. doi:https://doi.org/10.1111/j.1364-3703.2011.00783.x
   PubMed Web of Science ®Google Scholar
• Fetch T, Zegeye T, Park RF, Hodson D, Wanyera R. 2016. Detection of wheat stem rust races TTHSK and PTKTK in the Ug99 race group in Kenya in 2014. Plant Dis. 100:1495. doi:https://doi.org/10.1094/PDIS-11-15-1356-PDN.
   Web of Science ®Google Scholar
• Gao L, Babiker EM, Nava IC, Nirmala J, Bedo Z, Lang L, Chao S, Gale S, Jin Y, Anderson JA, et al. 2019. Temperature-sensitive wheat stem rust resistance gene Sr15 is effective against Puccinia graminis f. sp. tritici race TTKSK. Plant Path. 68(1):143–151. doi:https://doi.org/10.1111/ppa.12928
   Web of Science ®Google Scholar
• Gerechter-Amitai ZK, Wahl I, Vardi A, Zohary D. 1971. Transfer of stem rust seedling resistance from wild diploid einkorn to tetraploid durum wheat by means of a triploid hybrid bridge. Euphytica. 20(2):281–285. doi:https://doi.org/10.1007/BF00056088
   Web of Science ®Google Scholar
• Guerrero-Chavez R, Glover KD, Rouse MN, Gonzalez-Hernandez JL. 2015. Mapping of two loci conferring resistance to wheat stem rust pathogen races TTKSK (Ug99) and TRTTF in the elite hard red spring wheat line SD4279. Mol Breed. 35(1):8. doi:https://doi.org/10.1007/s11032-015-0198-4
   Web of Science ®Google Scholar
• Hiebert CW, Fetch TG Jr, Zegeye T. 2010. Genetics and mapping of stem rust resistance to Ug99 in the wheat cultivar Webster. Theor Appl Genet. 121(1):65–69. doi:https://doi.org/10.1007/s00122-010-1291-z
   PubMed Web of Science ®Google Scholar
• Hiebert CW, Kassa MT, McCartney CA, You FM, Rouse MN, Fobert P, Fetch TG. 2016. Genetics and mapping of seedling resistance to Ug99 stem rust in winter wheat cultivar Triumph 64 and differentiation of SrTmp, SrCad, and Sr42. Theor Appl Genet. 129(11):2171–2177. doi:https://doi.org/10.1007/s00122-016-2765-4
   PubMed Web of Science ®Google Scholar
• Hiebert CW, Rouse MN, Nirmala J, Fetch T. 2017. Genetic mapping of stem rust resistance to Puccinia graminis f. Sp. tritici race TRTTF in the Canadian wheat cultivar harvest. Phytopathology. 107(2):192–197. doi:https://doi.org/10.1094/PHYTO-05-16-0186-R
   PubMed Web of Science ®Google Scholar
• Jansen RC, Van Ooijen JW, Stam P, Lister C, Dean C. 1995. Genotype-by-environment interaction in genetic mapping of multiple quantitative trait loci. Theor Appl Genet. 91(1):33–37. doi:https://doi.org/10.1007/BF00220855
   PubMed Web of Science ®Google Scholar
• Jayatilake DV, Tucker EJ, Bariana H, Kuchel H, Edwards J, McKay AC, Chalmers K, Mather DE. 2013. Genetic mapping and marker development for resistance of wheat against the root lesion nematode Pratylenchus neglectus. BMC Plant Biol. 13:230. doi:https://doi.org/10.1186/1471-2229-13-230.
   PubMed Web of Science ®Google Scholar
• Jin Y, Singh RP, Ward RW, Wanyera R, Kinyua M, Njau P, Fetch T, Pretorius ZA, Yahyaoui A. 2007. Characterization of seedling infection types and adult plant infection responses of monogenic Sr gene lines to race TTKS of Puccinia graminis f. sp. tritici. Plant Dis. 91(9):1096–1099. doi:https://doi.org/10.1094/PDIS-91-9-1096
   PubMed Web of Science ®Google Scholar
• Jin Y, Szabo LJ, Pretorius ZA, Singh RP, Ward R, Fetch T Jr. 2008. Detection of virulence to resistance gene Sr24 within race TTKS of Puccinia graminis f. sp. tritici. Plant Dis. 92(6):923–926. doi:https://doi.org/10.1094/PDIS-92-6-0923
   PubMed Web of Science ®Google Scholar
• Jin Y, Szabo LJ, Rouse MN, Fetch T, Pretorius ZA, Wanyera R, Njau P. 2009. Detection of virulence to resistance gene Sr36 within the TTKS race lineage of Puccinia graminis f. sp. tritici. Plant Dis. 93(4):367–370. doi:https://doi.org/10.1094/PDIS-93-4-0367
   PubMed Web of Science ®Google Scholar
• Kassa MT, You FM, Hiebert CW, Pozniak CJ, Fobert PR, Sharpe AG, Menzies JG, Humphreys G, Rezac Harrison N, Fellers JP, et al. 2017. Highly predictive SNP markers for efficient selection of the wheat leaf rust resistance gene Lr16. BMC Biol. 17(1):45.
   Google Scholar
• Khan RR, Bariana HS, Dholakia BB, Naik SV, Lagu MD, Rathjen AJ, Bhavani S, Gupta VS. 2005. Molecular mapping of stem and leaf rust resistance in wheat. Theor Appl Genet. 111(5):846–850. doi:https://doi.org/10.1007/s00122-005-0005-4
   PubMed Web of Science ®Google Scholar
• Knox RE, Clarke JM, DePauw RM. 2000. Dicamba and growth condition effects on doubled haploid production in durum wheat crossed with maize. Plant Breed. 119:289–298. doi:https://doi.org/10.1046/j.1439-0523.2000.00498.x.
   Web of Science ®Google Scholar
• Kolmer JA, Jin Y, Long DL. 2007. Wheat leaf and stem rust in the United States. Aust J Agr Res. 58:631–638. doi:https://doi.org/10.1071/AR07057.
   Google Scholar
• Kosambi DD. 1943. The estimation of map distances from recombination values. Ann Eugen. 12:172–175. doi:https://doi.org/10.1111/j.1469-1809.1943.tb02321.x.
   Google Scholar
• Kosgey ZC, Edae EA, Dill-Macky R, Jin Y, Bulbula WD, Gemechu A, Macharia G, Bhavani S, Randhawa MS, Rouse MN. 2021. Mapping and validation of stem rust resistance loci in spring wheat line CI 14275. Front Plant Sci. 11:609659. doi:https://doi.org/10.3389/fpls.2020.609659.
   PubMed Web of Science ®Google Scholar
• Kumar S, Fox SL, Humphreys DG, Mitchell Fetch J, Green D, Fetch T, McCallum B, Menzies J. 2017. AAC prevail Canada western red spring wheat. Can J Plant Sci. 98(2):475–482.
   Web of Science ®Google Scholar
• LGC. 2019. Biosearch technologies. SeqSNP targeted GBS as alternative for array genotyping in routine breeding programs [White Paper]. [accessed 2019 July]. https://biosearch-cdn.azureedge.net/assetsv6/seqsnp-tgbs-alternative-genotyping-routine-breeding-programs.pdf.
   Google Scholar
• Liu S, Rudd JC, Bai G, Haley SD, Ibrahim AMH, Xue Q, Hays DB, Graybosch RA, Devkota RN, St. Amand P. 2014. Molecular markers linked to important genes in hard winter wheat. Crop Sci. 54(4):1304–1321. doi:https://doi.org/10.2135/cropsci2013.08.0564
   Web of Science ®Google Scholar
• Mago R, Zhang P, Bariana HS, Verlin DC, Bansal UK, Ellis JG, Dundas IS. 2009. Development of wheat lines carrying stem rust resistance gene Sr39 with reduced Aegilops speltoides chromatin and simple PCR markers for marker-assisted selection. Theor Appl Genet. 119(8):1441–1450. doi:https://doi.org/10.1007/s00122-009-1146-7
   PubMed Web of Science ®Google Scholar
• McCallum BD, Fetch T, Chong J. 2007. Cereal rust control in Canada. Aust J Agr Res. 58(6):639–647. doi:https://doi.org/10.1071/AR06145
   Google Scholar
• McIntosh R, Wellings C, Park R. 1995. Wheat rusts: an atlas of resistance genes. East Melbourne, Australia: CSIRO Publishing.
   Google Scholar
• McIntosh RA, Dubcovsky J, Rogers WJ, Morris CF, Appels R, Xia CX 2014. Catalogue of gene symbols for wheat: 2013-14 supplement. [accessed 2021 June]. https://shigen.nig.ac.jp/wheat/komugi/genes/macgene/supplement2013.pdf.
   Google Scholar
• McIntosh RA, Dubcovsky J, Rogers WJ, Xia CX, Raupp WJ 2020. Catalogue of gene symbols for wheat: 2020 supplement. [accessed 2021 June]. https://wheat.pw.usda.gov/GG3/sites/default/files/Catalogue%20of%20Gene%20Symbols%20for%20Wheat%20-%20supplement2020.pdf.
   Google Scholar
• McIntosh RA, Luig NH. 1973. Linkage of genes for reaction to Puccinia graminis f. sp. tritici and P. recondita in Selkirk wheat and related cultivars. Aust J BioI Sci. 26:1145–1152. doi:https://doi.org/10.1071/BI9731145.
   Google Scholar
• Niu Z, Klindworth DL, Friesen TL, Chao S, Jin Y, Cai X, Xu SS. 2011. Targeted introgression of a wheat stem rust resistance gene by DNA marker-assisted chromosome engineering. Genetics. 187(4):1011–1021. doi:https://doi.org/10.1534/genetics.110.123588
   PubMed Web of Science ®Google Scholar
• Olivera P, Newcomb M, Szabo LJ, Rouse M, Johnson J, Gale S, Luster DG, Hodson D, Cox JA, Burgin L, et al. 2015. Phenotypic and genotypic characterization of race TKTTF of Puccinia graminis f. sp. tritici that caused a wheat stem rust epidemic in Southern Ethiopia in 2013–14. Phytopathology. 105(7):917–928. doi:https://doi.org/10.1094/PHYTO-11-14-0302-FI
   PubMed Web of Science ®Google Scholar
• Olivera PD, Jin Y, Rouse M, Badebo A, Fetch T Jr, Singh RP, Yahyaoui A. 2012. Races of Puccinia graminis f. sp. tritici with combined virulence to Sr13 and Sr9e in a field stem rust screening nursery in Ethiopia. Plant Dis. 96(5):623–628. doi:https://doi.org/10.1094/PDIS-09-11-0793
   PubMed Web of Science ®Google Scholar
• Olivera PD, Rouse MN, Jin Y. 2018. Identification of new sources of resistance to wheat stem rust in Aegilops spp. in the tertiary genepool of wheat. Front Plant Sci. 9:1719. doi:https://doi.org/10.3389/fpls.2018.01719.
   PubMed Web of Science ®Google Scholar
• Olson EL, Brown-Guedira G, Marshall D, Stack E, Bowden RL, Jin Y, Rouse M, Pumphrey MO. 2010. Development of wheat lines having a small introgressed segment carrying stem rust resistance gene Sr22. Crop Sci. 50(5):1823–1830. doi:https://doi.org/10.2135/cropsci2009.11.0652
   Web of Science ®Google Scholar
• Patpour M, Hovmøller MS, Justesen AF, Newcomb M, Olivera P, Jin Y, Szabo LJ, Hodson D, Shahin AA, Wanyera R, et al. 2016. Emergence of virulence to SrTmp in the Ug99 race group of wheat tritici, in Africa. Plant Dis. 100(2):522. doi:https://doi.org/10.1094/PDIS-06-15-0668-PDN
   Web of Science ®Google Scholar
• Peterson PD. 2018. The barberry eradication program in Minnesota for stem rust control: a case study. Annu Rev Phytopathol. 56(1):203–223. doi:https://doi.org/10.1146/annurev-phyto-080417-050133
   PubMed Web of Science ®Google Scholar
• Peterson R, Campbell A, Hannah A. 1948. A diagramatic scale for estimating rust intensity of leaves and stem of cereals. Can J Res. 26:496–500. doi:https://doi.org/10.1139/cjr48c-033.
   Web of Science ®Google Scholar
• Peturson B. 1958. Wheat rust epidemics in western Canada in 1953, 1954 and 1955. Can J Plant Sci. 38:16–38. doi:https://doi.org/10.4141/cjps58-004.
   Google Scholar
• Pretorius ZA, Singh RP, Wagoire WW, Payne TS. 2000. Detection of virulence to wheat stem rust resistance gene Sr31 in Puccinia graminis. f. sp. tritici in Uganda. Plant Dis. 84(2):203. doi:https://doi.org/10.1094/PDIS.2000.84.2.203B
   PubMedGoogle Scholar
• Pretorius ZA, Szabo LJ, Boshoff WHP, Herselman L, Visser B. 2012. First report of a new ttksf race of wheat stem rust (Puccinia graminis f. sp. tritici) in South Africa and Zimbabwe. Plant Dis. 96(4):590. doi:https://doi.org/10.1094/PDIS-12-11-1027-PDN
   PubMed Web of Science ®Google Scholar
• Randhawa MS, Singh RP, Dreisigacker S, Bhavani S, Huerta-Espino J, Rouse MN, Nirmala J, Sandoval-Sanchez M. 2018. Identification and validation of a common stem rust resistance locus in two bi-parental populations. Front Plant Sci. 9:1788. doi:https://doi.org/10.3389/fpls.2018.01788.
   PubMed Web of Science ®Google Scholar
• Roelfs AP. 1989. Epidemiology of the cereal rusts in north america. Can J Plant Pathol. 11(1):1–90. doi:https://doi.org/10.1080/07060668909501153
   Web of Science ®Google Scholar
• Roelfs AP, Singh RP, Saari EE. 1992. Rust diseases of wheat: concepts and methods of disease management. Mexico: CIMMYT.
   Google Scholar
• RustTracker. 2021. RustTracker.org: a global wheat rust monitoring system. [accessed 2021 June]. https://rusttracker.cimmyt.org/.
   Google Scholar
• Singh RP, Hodson DP, Huerta-Espino J, Jin Y, Bhavani S, Njau P, Herrera-Foessel S, Singh PK, Singh S, Govindan V. 2011. The emergence of Ug99 races of the stem rust fungus is a threat to world wheat production. Annu Rev Phytopathol. 49:465–481. doi:https://doi.org/10.1146/annurev-phyto-072910-095423.
   PubMed Web of Science ®Google Scholar
• Singh RP, Hodson DP, Jin Y, Huerta-Espino J, Kinyua MG, Wanyera R, Njau P, Ward RW. 2006. Current status, likely migration and strategies to mitigate the threat to wheat production from race Ug99 (TTKS) of stem rust pathogen. CAB Reviews. [accesed 2021 April]. https://www.cabi.org/cabreviews/review/20073043169.
   Google Scholar
• Singh RP, Hodson DP, Jin Y, Lagudah ES, Ayliffe MA, Bhavani S, Rouse MN, Pretorius ZA, Szabo LJ, Huerta-Espino J, et al. 2015. Emergence and spread of new races of wheat stem rust fungus: continued threat to food security and prospects of genetic control. Phytopathology. 105(7):872–884. doi:https://doi.org/10.1094/PHYTO-01-15-0030-FI
   PubMed Web of Science ®Google Scholar
• Stakman E, Stewart D, Loegering W. 1962. Identification of physiologic races of Puccinia graminis var. tritici. Washington (DC): USDA Agricultural Research Service E617; p. 53.
   Google Scholar
• Terefe T, Pretorius ZA, Visser B, Boshoff WHP. 2019. First report of Puccinia graminis f. sp. tritici race PTKSK, a variant of wheat stem rust race Ug99, in South Africa. Plant Dis. 103(6):1421. doi:https://doi.org/10.1094/PDIS-11-18-1911-PDN
   Web of Science ®Google Scholar
• The T, Latter B, McIntosh R, Ellison F, Brennan P, Fisher J, Hollamby G, Rathjen A, Wilson R. 1988. Grain yields of near isogenic lines with added genes for stem rust resistance. In: Miller TE, Koebner RMD, editors. Proceedings of the seventh international wheat genetics symposium. Cambridge (UK): Institute of Plant Science Research; p. 901–906.
   Google Scholar
• The TT. 1973. Chromosome location of genes conditioning stem rust resistance transferred from diploid to hexaploid wheat. Nat New Biol. 241(112):256. doi:https://doi.org/10.1038/newbio241256a0
   PubMedGoogle Scholar
• Tsilo TJ, Jin Y, Anderson JA. 2008. Diagnostic microsatellite markers for the detection of stem rust resistance gene Sr36 in diverse genetic backgrounds of wheat. Crop Sci. 48(1):253–261. doi:https://doi.org/10.2135/cropsci2007.04.0204
   Web of Science ®Google Scholar
• Van Ooijen J 2009. MapQTL® 6: software for the mapping of quantitative trait loci in experimental populations of diploid species. Kyazma BV. Wageningen (The Netherlands); p. 59. [accessed 2020 August 2020]. https://www.kyazma.nl/docs/MQ6Manual.pdf.
   Google Scholar
• Visser B, Herselman L, Pretorius ZA. 2009. Genetic comparison of Ug99 with selected South African races of Puccinia graminis f.sp. tritici. Mol Plant Pathol. 10(2):213–222. doi:https://doi.org/10.1111/j.1364-3703.2008.00525.x
   PubMed Web of Science ®Google Scholar
• Voorrips RE. 2002. MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered. 93:77–78. doi:https://doi.org/10.1093/jhered/93.1.77.
   PubMed Web of Science ®Google Scholar
• Wang S, Wong D, Forrest K, Allen A, Chao S, Huang BE, Maccaferri M, Salvi S, Milner SG, Cattivelli L, et al. 2014. Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array. Plant Biotechnol J. 12(6):787–796. doi:https://doi.org/10.1111/pbi.12183
   PubMed Web of Science ®Google Scholar
• Watson IA, Luig NH. 1966. SR 15 - A new gene for use in the classification of Puccinia graminis var. tritici. Euphytica. 15(2):239–247. doi:https://doi.org/10.1007/BF00022329
   Web of Science ®Google Scholar
• Wu S, Pumphrey M, Bai G. 2009. Molecular mapping of stem-rust-resistance gene Sr40 in wheat. Crop Sci. 49(5):1681–1686. doi:https://doi.org/10.2135/cropsci2008.11.0666
   Web of Science ®Google Scholar
• Yu LX, Barbier H, Rouse MN, Singh S, Singh RP, Bhavani S, Huerta-Espino J, Sorrells ME. 2014. A consensus map for Ug99 stem rust resistance loci in wheat. Theor Appl Genet. 127(7):1561–1581. doi:https://doi.org/10.1007/s00122-014-2326-7
   PubMed Web of Science ®Google Scholar