27
Views
0
CrossRef citations to date
0
Altmetric
Genetics and Resistance / Génétique et Résistance

Occurrence and characterization of Puccinia triticina in Zimbabwe

, , &
Accepted 11 May 2024, Published online: 04 Jun 2024

References

  • Agapow PM, Burt A. 2001. Indices of multilocus linkage disequilibrium. Mol Ecol Notes. 1(1–2):101–102. doi: 10.1046/j.1471-8278.2000.00014.x.
  • Balloux F, Lehmann L, De Meeûs T. 2003. The population genetics of clonal and partially clonal diploids. Genetics. 164:1635–1644. doi: 10.1093/genetics/164.4.1635.
  • Błaszczyk L, Goyeau H, Huang X, Röder M, Stepień L, Chełkowski J. 2004. Identifying leaf rust resistance genes and mapping gene Lr37 on the microsatellite map of wheat. Cell Mol Biol Lett. 9:869–878.
  • Boshoff WHP, Labuschagne R, Terefe T, Pretorius ZA, Visser B. 2018. New Puccinia triticina races on wheat in South Africa. Australas Plant Pathol. 47:325–334. doi: 10.1007/s13313-018-0560-1.
  • Cook NM, Chng S, Woodman TL, Warren R, Oliver RP, Saunders DGO. 2021. High frequency of fungicide resistance-associated mutations in the wheat yellow rust pathogen Puccinia striiformis f. sp. tritici. Pest Manag Sci. 77:3358–3360. doi: 10.1002/ps.6380.
  • Evanno G, Regnaut S, Goudet J. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol. 14:2611–2620. doi: 10.1111/j.1365-294X.2005.02553.x.
  • Excoffier L, Smouse PE, Quattro JM. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics. 131:479–491. doi: 10.1093/genetics/131.2.479.
  • Goudet J. 2003. Fstat (ver. 2.9.4), a program to estimate and test population genetics parameters. Adapted from Goudet 1995. [accessed 2022 May 31]. https://www.unil.ch/izea/softwares/fstat.html.
  • Halkett F, Simon JC, Balloux F. 2005. Tackling the population genetics of clonal and partially clonal organisms. Trends Ecol Evol. 20:194–201. doi: 10.1016/j.tree.2005.01.001.
  • Jombart T, Devillard S, Balloux F. 2010. Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC Genet. 11:94. doi: 10.1186/1471-2156-11-94.
  • Kolmer JA. 2015. Collections of Puccinia triticina in different provinces of China are highly related for virulence and molecular genotype. Phytopathology. 105:700–706. doi: 10.1094/phyto-11-14-0293-r.
  • Kolmer JA, Jin Y, Long DL. 2007. Wheat leaf and stem rust in the United States. Aust J Agric Res. 58:631–638. doi: 10.1071/AR07057.
  • Kolmer JA, Mirza JI, Imtiaz M, Shah SJA. 2017. Genetic differentiation of the wheat leaf rust fungus Puccinia triticina in Pakistan and genetic relationship to other worldwide populations. Phytopathology. 107:786–790. doi: 10.1094/PHYTO-10-16-0388-R.
  • Kolmer JA, Ordoñez ME, German SE, Morgunov A, Pretorius ZA, Visser B, Acevedo M. 2019. Multilocus genotypes of the wheat leaf rust fungus Puccinia triticina in worldwide regions indicate past and current long-distance migration. Phytopathology. 109:1453–1463. doi: 10.1094/PHYTO-10-18-0411-R.
  • Kopelman NM, Mayzel J, Jakobsson M, Rosenberg NA, Mayrose I. 2015. CLUMPAK: a program for identifying clustering modes and packaging population structure inferences across K. Mol Eco Resourc. 15:1179–1191. doi: 10.1111/1755-0998.12387.
  • Liu TG, Chen WQ. 2012. Race and virulence dynamics of Puccinia triticina in China during 2000–2006. Plant Dis. 96:1601–1607. doi: 10.1094/PDIS-06-10-0460-RE.
  • Liu T, Ge R, Ma Y, Liu B, Gao L, Chen W. 2018. Population genetic structure of Chinese Puccinia triticina races based on multi-locus sequences. J Integr Agric. 17:1779–1789. doi: 10.1016/S2095-3119(18)61923-9.
  • Li F, Upadhyaya NM, Sperschneider J, Matny O, Nguyen-Phuc H, Mago R, Raley C, Miller ME, Silverstein KAT, Henningsen E, et al. 2019. Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation. Nat Commun. 10:5068. doi: 10.1038/s41467-019-12927-7.
  • Liu M, Rodrigue N, Kolmer J. 2014. Population divergence in the wheat leaf rust fungus Puccinia triticina is correlated with wheat evolution. Heredity. 112:443–453. doi: 10.1038/hdy.2013.123.
  • Long DL, Kolmer JA. 1989. A North American system of nomenclature for Puccinia recondita f. sp. tritici. Phytopathology. 79:525–529. doi: 10.1094/Phyto-79-525.
  • McCallum BD, Hiebert CW, Cloutier S, Bakkeren G, Rosa SB, Humphreys DG, Marais GF, McCartney CA, Panwar V, Rampitsch C, et al. 2016. A review of wheat leaf rust research and the development of resistant cultivars in Canada. Can J Plant Pathol. 38(1):1–18. doi: 10.1080/07060661.2016.1145598.
  • McDonald BA, Linde C. 2002. Pathogen population genetics, evolutionary potential, and durable resistance. Annu Rev Phytopathol. 40:349–379. doi: 10.1146/annurev.phyto.40.120501.101443.
  • McIntosh RA, Wellings CR, Park RF. 1995. Wheat rusts: an atlas of resistance genes. East Melbourne: CSIRO Publications.
  • Morris ML. 1988. Comparative advantage and policy incentives for wheat production in Zimbabwe. D.F. Economics Working Paper 88/02. México: CIMMYT.
  • Mukoyi F, Soko T, Mulima E, Mutari B, Hodson D, Herselman L, Visser B, Pretorius ZA. 2011. Detection of variants of wheat stem rust race Ug99 (Puccinia graminis f. sp. tritici) in Zimbabwe and Mozambique. Plant Dis. 95:1188. doi: 10.1094/pdis-04-11-0300.
  • Munyati S, Chandiwana B, Mahati S, Mupambireyi P, Buzuzi S, Mashange W, Moyana T, Gwini S, Rusakaniko S. 2008. Situation analysis of orphaned and vulnerable children in eight districts in Zimbabwe. Capetown (South Africa): HSRC Press.
  • Mutari B, Nyambo P, Mtisi E, Musoni M. 2012. Zimbabwe wheat rust survey report. [accessed 2021 Sep 28]. https://rusttracker.cimmyt.org/?page_id=956.
  • Mutari B, Udupa SM, Mavindidze P, Mutengwa CS. 2018. Detection of rust resistance in selected Zimbabwean and ICARDA bread wheat (Triticum aestivum) germplasm using conventional and molecular techniques. S Afr J Plant. 35:101–110. doi: 10.1080/02571862.2017.1336260.
  • Ordoñez ME, Kolmer JA. 2009. Differentiation of molecular genotypes and virulence phenotypes of Puccinia triticina from common wheat in North America. Phytopathology. 99:750–758. doi: 10.1094/phyto-99-6-0750.
  • Park RF, Clark B. 2020. Use of fungicides in Australia puts selection pressure on fungal pathogens. Groundcover. 144. https://groundcover.grdc.com.au.
  • Park RF, Wellings CR. 2012. Somatic hybridization in the Uredinales. Annu Rev Phytopathol. 50:219–239. doi: 10.1146/annurev-phyto-072910-095405.
  • Peakall R, Smouse PE. 2006. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes. 6:288–295. doi: 10.1111/j.1471-8286.2005.01155.x.
  • Peakall R, Smouse PE. 2012. GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update. Bioinform. 28:2537–2539. doi: 10.1093/bioinformatics/bts460.
  • Perrier X, Jacquemoud-Collet JP. 2006. DARwin software. http://darwin.cirad.fr/darwin.
  • Pretorius ZA, Bender CM. 2010. First report of virulence for the wheat leaf rust (Puccinia triticina) resistance gene Lr32 in South Africa. Plant Dis. 94:381. doi: 10.1094/pdis-94-3-0381a.
  • Pretorius ZA, Booysen GJ, Boshoff WHP, Joubert J, Maree GJ, Els J. 2019. Additive manufacturing of devices used for collection and application of cereal rust urediniospores. Front Plant Sci. 10:639. doi: 10.3389/fpls.2019.00639.
  • Pretorius ZA, Le Roux J. 1988. Occurrence and pathogenicity of Puccinia recondita f. sp. tritici in South Africa during 1986 and 1987. Phytophylactica. 20:349–352.
  • Pretorius ZA, Le Roux J, Drijepondt SC. 1990. Occurrence and pathogenicity of Puccinia recondita f. sp. tritici on wheat in South Africa during 1988. Phytophylactica. 22:225–228.
  • Pretorius ZA, Pienaar L, Prins R. 2007. Greenhouse and field assessment of adult plant resistance to stripe rust of wheat. Australas Plant Pathol. 36:552–559. doi: 10.1071/AP07058.
  • Pretorius ZA, Purchase PL. 1990. Virulence characteristics of wheat leaf rust in Zimbabwe, Zambia and Malawi. Phytophylactica. 22:141–142.
  • Pretorius ZA, Rijkenberg FHJ, Wilcoxson RD. 1987. Occurrence and pathogenicity of Puccinia recondita f. sp. tritici on wheat in South Africa from 1983 through 1985. Plant Dis. 71:1133–1137. doi: 10.1094/PD-71-1133.
  • Pretorius ZA, Visser B, Terefe T, Herselman L, Prins R, Soko T, Siwale J, Mutari B, Selinga TI, Hodson DP. 2015. Races of Puccinia triticina detected on wheat in Zimbabwe, Zambia and Malawi and regional germplasm responses. Australas Plant Pathol. 44:217–224. doi: 10.1007/s13313-014-0339-y.
  • Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics. 155:945–959. doi: 10.1093/genetics/155.2.945.
  • Raymond M, Rousset F. 1995. GENEPOP (version 1.2): a population genetics software for exact test and ecumenicism. J Hered. 86:248–249. doi: 10.1093/oxfordjournals.jhered.a111573.
  • Rousset F. 2008. GENEPOP’007: a complete reimplementation of the Genepop software for Windows and Linux. Mol Ecol Resour. 8:103–106. doi: 10.1111/j.1471-8286.2007.01931.x.
  • Saghai-Maroof MA, Soliman KM, Jorgensen RA, Allard RW. 1984. Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location and population dynamics. P Natl Acad Sci USA. 81:8014–8018. doi: 10.1073/pnas.81.24.8014.
  • Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning, a laboratory manual. 2nd ed. (NY) (USA): Cold Spring Harbor Press.
  • Schneider S, Excoffier L, Laval G. 2010. Arlequin (version 3.5.1.2): An integrated software package for population genetics data analysis. Evol Bioinform Online. 1:47–50.
  • Stenberg P, Lundmark M, Saura A. 2003. MLGSIM: a program for detecting clones using a simulation approach. Mol Ecol Notes. 3:329–331. doi: 10.1046/j.1471-8286.2003.00408.x.
  • Szabo LJ, Kolmer JA. 2007. Development of simple sequence repeat markers for the plant pathogenic rust fungus Puccinia triticina. Mol Ecol Notes. 7:708–710. doi: 10.1111/j.1471-8286.2007.01686.x.
  • Terefe TG, Pretorius ZA, Bender CM, Visser B, Herselman L, Negussie TG. 2011. First report of a new wheat leaf rust (Puccinia triticina) race with virulence for Lr12, 13, and 37 in South Africa. Plant Dis. 95:611. doi: 10.1094/pdis-07-10-0545.
  • Terefe TG, Visser B, Herselman L, Prins R, Negussie T, Kolmer J, Pretorius ZA. 2014a. Diversity in Puccinia triticina detected on wheat from 2008 to 2010 and the impact of new races on South African wheat germplasm. Eur J Plant Pathol. 139:95–105. doi: 10.1007/s10658-013-0368-3.
  • Terefe TG, Visser B, Herselman L, Selinga T, Pretorius ZA. 2014b. First report of Puccinia triticina (leaf rust) race FBPT on wheat in South Africa. Plant Dis. 98:1001. doi: 10.1094/PDIS-12-13-1195-PDN.
  • Terefe TG, Visser B, Pretorius ZA, Boshoff WHP. 2023. Physiologic races of Puccinia triticina detected on wheat in South Africa from 2017 to 2020. Eur J Plant Pathol. 165:1–15. doi: 10.1007/s10658-022-02583-x.
  • Visser B, Herselman L, Pretorius ZA. 2009. Genetic comparison of Ug99 with selected South African races of Puccinia graminis f. sp. tritici. Mol Plant Pathol. 10:213–222. doi: 10.1111/j.1364-3703.2008.00525.x.
  • Visser B, Meyer M, Park RF, Gilligan CA, Burgin LE, Hort MC, Hodson DP, Pretorius ZA. 2019. Microsatellite analysis and urediniospore dispersal simulations support the movement of Puccinia graminis f. sp. tritici from Southern Africa to Australia. Phytopathology. 109:133–144. doi: 10.1094/PHYTO-04-18-0110-R.
  • Wang X, Mulock B, Guus B, McCallum B. 2010. Development of EST-derived simple sequence repeat markers for wheat leaf rust fungus, Puccinia triticina Eriks. Can J Plant Pathol. 32(1):98–107. doi: 10.1080/07060661003594133.
  • Weir BS, Cockerham CC. 1984. Estimating F-statistics for the analysis of population structure. Evolution. 38:1358–1370. doi: 10.1111/j.1558-5646.1984.tb05657.x.
  • Wright S. 1951. The genetic structure of populations. Ann Eugen. 15(4):323–354. doi: 10.1111/j.1469-1809.1949.tb02451.x.
  • Xu Z, Li H, Xia X, Liu B, Gao L, Chen W, Liu T. 2022. SSR genotypes of Puccinia triticina in 15 provinces of China indicate regional migration in one season from East to West and South to North. Agronomy. 12(2):3068. doi: 10.3390/agronomy12123068.
  • Zadoks JC, Chang TT, Konzak CF. 1974. A decimal code for the growth stages of cereals. Weed Res. 14(6):415–421. doi: 10.1111/j.1365-3180.1974.tb01084.x.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.