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Journal of Biomolecular Structure and Dynamics Volume 11, 1994 - Issue 4
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Original Articles

DNA Sequencing by Hybridization to Oligonucleotide Matrix. Calculation of Continuous Stacking Hybridization Efficiency

Yu. P. Lysov W. A.Engelhardt Institute of Molecular Biology the Russian Academy of Sciences, Moscow, 117984, RUSSIA
,
A. A. Chernyi W. A.Engelhardt Institute of Molecular Biology the Russian Academy of Sciences, Moscow, 117984, RUSSIA
,
A. A. Balaeff W. A.Engelhardt Institute of Molecular Biology the Russian Academy of Sciences, Moscow, 117984, RUSSIA
,
K. L. Beattie DNA Technology Laboratory Houston Advanced Research Center, The Woodlands, TX, 77380, USA
&
A. D. Mirzabekov W. A.Engelhardt Institute of Molecular Biology the Russian Academy of Sciences, Moscow, 117984, RUSSIA
Pages 797-812 | Received 29 Nov 1993, Published online: 21 May 2012

References and Footnotes

  • Drmanac , R. , Labat , L. , Brukner , I. and Crkvenjakov , R. 1989 . “Sequencing of megabase plus DNA by hybridization: Theory of the method” . Genomics , 4 : 114 – 128 .
  • Strezoska , Z. , Paunesku , T. , Radosavljevic , D. , Labat , I. , Drmanac , R. and Crkvenjakov , R. 1991 . “DNA sequencing by hybridization: 100 bases read by a non-gel-based method” . Proc. Natl. Acad. Sci. USA. , : 10089 – 10093 .
  • Bains , W. and Smith , G. C. 1988 . “A novel method for nucleic acid sequence determination” . J. Theor. Biol. , 135 : 303 – 307 .
  • Khrapko , K. R. , Lysov , Yu. P. , Khorlin , A. A. , Shick , V. V. , Florentiev , V. L. and Mirzabekov , A. D . 1989 . “An oligonucleotide hybridization approach to DNA sequencing” . FEBS Lett. , 256 : 118 – 122 .
  • Khrapko , K. R. , Lysov , Yu. P. , Khorlin , A. A. , Ivanov , I. B. , Yershov , G. M. , Vasilenko , S. K. , Florentiev , V. L. and Mirzabekov , A. D. 1991 . “A method for DNA sequencing by hybridization with oligonucleotide matrix” . DNA Sequence , 1 : 375 – 388 .
  • Lysov , Yu. P. , Florentiev , V. L. , Khorlyn , A. A. , Khrapko , K. R. , Shick , V. V. and Mirzabekov , A. D. 1988 . “DNA sequencing by hybridization with oligonucleotides. A novel method” . Dokl. Akad. Nauk SSSR , 303 : 1508 – 1511 .
  • Southern , E. M. , Maskos , U. and Elder , J. K. 1992 . “Analyzing and comparing nucleic acid sequences by hybridization to arrays of oligonucleotides: Evaluation using experimental models”. . Genomics , 13 : 1008 – 1017 .
  • Pevzner , P. A. 1989 . “1-tuple DNA sequencing: Computer analysis” . J. Biomol. Struct Dyn. , 7 : 63 – 73 .
  • Lysov , Yu. P. , Khrapko , K. R. , Chernyi , A. A. , Khorlin , A. A. , Florentiev , V. L. and Mirzabekov , A. D. 1990 . “DNA sequencing by oligonucleotide hybridization” . First International Conf. on Electrophoresis, Supercomputing and the Human Genom Tallahassee , : 157 – 163 .
  • Bains , W. 1991 . “Hybridization methods for DNA sequencing”. . Genomics , 11 : 294 – 301 .
  • Pevzner , P. A. , Lysov , Yu. P. , Khrapko , K. R. , Belyavsky , A. V. , Florentiev , V. L. and Mirzabekov , A. D. 1991 . “Improved chips for sequencing by hybridization” . J. Biomol Struct. Dyn. , 9 : 399 – 410 .
  • Pevzner , P. A. and Lipshutz , R. J. 1993 . “Towards DNA sequencing by hybridization” (submitted)
  • Kieleczawa , J. , Dunn , J. J. and Studier , F. W. 1992 . “DNA sequencing by primer walking with string of contiguous hexamers” . Science , 258 : 1787 – 1792 .
  • Khorlin , A. A. , Khrapko , K. R. , Ivanov , I. B. , Lysov , Yu. P. , Yershov , G. M. , Vasilenko , S. K. , Florentiev , V. L. and Mirzabekov , A. D. 1991 . “An oligonucleotide matrix hybridization approach to DNA sequencing”. . Nucleic Acids Res. , 24 : 191 – 192 .
  • Kotler , L. E. , Zevin-Sonkin , D. , Sobolev , I. A. , Beskin , A. D. and Ulanovsky , L. E. 1993 . “DNA sequencing: Modular primers assembled from a library of hexamers or pentamers” . Proc. Natl. Acad. Sci. USA , 90 : 4241 – 4245 .

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