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Original Articles

A Full-Coordinate Model of the Polymerase Domain of HIV-I Reverse Transcriptase and its Interaction With a Nucleic Acid Substrate

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Pages 37-60 | Received 01 May 1994, Published online: 21 May 2012

References and Footnotes

  • Abbreviations: AZT, 3‘-azido-2′,3’-dideoxythymidine; RT, reverse transcriptase; HIV-1, human immunodefiency virus type I; dsDNA, double-stranded DNA; ssRNA, single-stranded RNA; cDNA, complementary DNA; dNTP, deoxynucleotide triphosphate; dTTP, deoxythymidine triphosphate; GCG, Genetics Computer Group; PDB, Brookhaven Protein Data Bank; 19/18 dsDNA 19-base/18-base dsDNA
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