16
Views
5
CrossRef citations to date
0
Altmetric
Original Articles

Harmonic Analysis of DNA Dynamics in a Viscous Medium

&
Pages 921-932 | Received 08 Dec 1999, Published online: 15 May 2012

References and Footnotes

  • Barkley , M. D. and Zimm , B. H. 1979 . J. Chem. Phys. , 70 : 2991 – 3007 .
  • Lamm , G. and Szabo , A. 1986 . J. Chem. Phys. , 85 : 7334 – 7348 .
  • Allison , S. A. and Schurr , J. M. 1979 . Chem. Phys. , 41 : 35 – 39 .
  • Heath , P. J. , Gebe , J. A. , Allison , S. A. and Schurr , J. M. 1996 . Macromolecules , 29 : 3583 – 3596 .
  • Klenin , K. , Merlitz , H. and Langowski , J. 1998 . Biophys. J. , 74 : 780 – 788 .
  • Fixman , M. 1988 . J. Chem. Phys. , 89 : 2442 – 2462 .
  • Duong , T. H. and Zakrzewska , K. 1997 . J. Comput. Chem. , 18 : 796 – 811 .
  • Lin , D. , Matsumoto , A. and Go , N. 1997 . J. Chem. Phys. , 107 : 3684 – 3690 .
  • Wilson , R. W. and Schellman , J. A. 1977 . Biopolymers , 16 : 2143 – 2165 .
  • Prohofsky , E. W. 1986 . Biomolecular Stereodynamics IV Edited by: Sarma , R. H. and Sarma , M. H. 21 – 46 . Guilderland , NY : Adenine .
  • Prohofsky , E. W. 1995 . Statistical Mechanics and Stability of Macromolecules New York) : Cambridge University Press .
  • Georghiou , S. , Philippetis , A. , Bradrick , T. D. and Beechem , J. M. 1996 . Biophys. J. , 70 : 1909 – 1922 .
  • Georghiou , S. , Kubala , S. M. and Large , C. C. 1998 . Photochem. Photobiol. , 67 : 526 – 531 .
  • Saenger , W. 1984 . Principles of Nucleic Acid Structure New York) : Springer-Verlag .
  • Chandler , D. 1987 . Introduction to Modern Statistical Mechanics New York) : Oxford University Press .
  • Kubo , R. , Toda , M. and Hashitsume , N. 1983 . Statistical Physics II: Nonequilibrium Statistical Mechanics New York) : Springer-Verlag .
  • Shih , C. C. and Georghiou , S. to be published
  • Shih , C. C. 1980 . Phys. Rev. , B23 : 2797 – 2809 .
  • Kollman , P. , Keepers , J. W. and Weiner , P. 1982 . Biopolymers , 21 : 2345 – 2376 .
  • Gorenstein , D. G. 1994 . Chem. Rev. , 94 : 1315 – 1338 .
  • Sponer , J. , Gabb , H. A. , Leszczynski , J. and Hobza , P. 1997 . Biophys. J. , 73 : 76 – 87 .
  • Georghiou , S. , Zhu , S. , Weidner , R. , Huang , C. R. and Ge , G. 1990 . J. Biomol. Struct. Dyn. , 8 : 657 – 674 .
  • Jordan , F. 1973 . J. Theor. Biol. , 41 : 375 – 395 .
  • Turner , D. H. , Sugimoto , N. , Kierzek , R. and Dreiker , S. D. 1987 . J. Am. Chem. Soc. , 109 : 3783 – 3785 .
  • Edward , J. T. 1970 . J. Chem. Educ. , 47 : 261 – 270 .
  • Edwards , G. and Liu , C. 1991 . Phys. Rev. , A44 : 2709 – 2717 .
  • Urabe , H. , Tsukakoshi , M. and Kasuya , T. 1991 . J. Chem. Phys. , 95 : 5519 – 5523 .
  • A more recent analysis of the low-frequency Raman spectrum for DNA films with varying water content employed the sum of damped harmonic oscillator modes coupled to water relaxation modes (29). Such models employ phenomenological approximations to account for the effect of the solvent without the benefit of a more comprehensive analysis such as the one presented here
  • Urabe , H. , Sugawara , Y. , Ataka , M. and Rupprecht , A. 1998 . Biophys. J. , 74 : 1533 – 1540 .
  • Urabe , H. and Tominaga , Y. 1982 . Biopolymers , 21 : 2477 – 2481 .
  • Pastor , R. W. and Zwanzig , R. 1989 . J. Chem. Phys. , 90 : 5729 – 2734 .
  • Chirico , G. and Langowski , J. 1996 . Biophys. J. , 71 : 955 – 971 .
  • Cantor , C. R. and Schimmel , P. R. 1980 . Biophysical Chemistry; Part II New York) : W.H. Freeman and Co. .
  • Watson , J. D. , Hopkins , N. H. , Roberts , J. W. , Steitz , J. A. and Weiner , A. M. 1987 . Molecular Biology of the Gene, , 4th ed. Menlo Park , CA : Benjamin/Cummings .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.