Structure of the Sm Binding Site From Human U4 snRNA Derived From a 3 ns PME Molecular Dynamics Simulation

References and Footnotes

• Baserga , S. J. and Steitz , J. A. 1993 . The RNA World. 359 – 381 . New York : Cold Spring Harbor Laboratory Press .
   Google Scholar
• Ayadi , L. , Callebaut , I. , Saguez , C. , Villa , T. , Mornon , J. P. and Banroques , J. 1998 . J. Mol. Biol. , 284 : 673 – 687 .
   PubMedGoogle Scholar
• Hermann , H. , Fabrizio , P. , Raker , V. A. , Foulaki , K. , Hornig , H. , Brahms , H. and Luehrmann , R. 1995 . EMBO J. , 14 : 2076 – 2088 .
   PubMed Web of Science ®Google Scholar
• Will , C. L. and Luehrmann , R. 1997 . Curr. Opin. Cell Biol. , 9 : 320 – 328 .
   PubMed Web of Science ®Google Scholar
• Varani , G. and Nagai , K. 1998 . Annu. Rev. Biophys. Biomol. Struct. , 27 : 407 – 445 .
   PubMedGoogle Scholar
• Branlant , C. , Krol , A. , Ebel , J. P. , Lazar , E. , Haendler , B. and Jacob , M. 1998 . EMBO J. , 1 : 1259 – 1265 .
   Google Scholar
• Liautard , J. P. , Sri-Widada , J. , Brunel , C. and Jeanteur , P. 1982 . J. Mol. Biol. , 162 : 623 – 643 .
   PubMed Web of Science ®Google Scholar
• Mattaj , I. W. and DeRobertis , E. M. 1985 . Cell , 40 : 111 – 118 .
   PubMed Web of Science ®Google Scholar
• Hu , J. , Xu , D. , Schappert , K. , Xu , Y. and Friesen , J. D. 1995 . Mol. Cell Biol. , 15 : 1274 – 1285 .
   PubMed Web of Science ®Google Scholar
• Jones , M. H. and Guthrie , C. 1990 . EMBO J. , 9 : 2555 – 2561 .
   PubMed Web of Science ®Google Scholar
• Raker , V. A. , Hartmuth , K. , Kastner , B. and Luehrmann , R. 1999 . Mol. Cell Biol. , 19 : 6554 – 6565 .
   PubMed Web of Science ®Google Scholar
• Lehmeier , T. , Raker , V. A. , Hermann , H. and Luehrmann , R. 1994 . Proc. Natl. Acad. Sci. USA , 91 : 12317 – 12321 .
   PubMedGoogle Scholar
• Raker , V. A. , Plesset , G. and Luehrmann , R. 1996 . EMBO J. , 15 : 2256 – 2269 .
   PubMedGoogle Scholar
• Fury , M. , Andersen , J. , Ponda , P. , Aimes , R. and Zieve , G. W. 1999 . J. Autoimmun. , 12 : 91 – 100 .
   PubMedGoogle Scholar
• Fisher , D. E. , Conner , G. E. , Reeves , W. H. , Wisniewolski , R. and Blobel , G. 1985 . Cell , 42 : 751 – 758 .
   PubMed Web of Science ®Google Scholar
• Feeney , R. J. , Sauterer , R. A. , Feeney , J. L. and Zieve , G. W. 1989 . J. Biol. Chem. , 264 : 5776 – 5783 .
   PubMed Web of Science ®Google Scholar
• Sauterer , R. A. , Goyal , A. and Zieve , G. W. 1990 . J. Biol. Chem. , 265 : 1048 – 1058 .
   PubMed Web of Science ®Google Scholar
• Kambach , C. , Walke , S. , Young , R. , Avis , J. M. , De LaFortelle , E. , Raker , V. A. , Luehrmann , R. , Li , J. and Nagai , K. 1999 . Cell , 96 : 375 – 387 .
   PubMed Web of Science ®Google Scholar
• Guo , J. X. and Gmeiner , W. H. 2000 . Submitted ,
   Google Scholar
• Lamond , A. I. 1999 . Nature , 397 : 655 – 656 .
   PubMedGoogle Scholar
• Kastner , B. , Bach , M. and Luehrmann , R. 1990 . Proc. Natl. Acad. Sci. USA , 87 : 1710 – 1714 .
   PubMed Web of Science ®Google Scholar
• Jarmalowski , A. and Mattaj , I. W. 1993 . EMBO J. , 12 : 223 – 232 .
   PubMedGoogle Scholar
• Wolff , T. and Binderief , A. 1992 . EMBO J. , 11 : 345 – 359 .
   PubMed Web of Science ®Google Scholar
• Zuker , M. 1989 . Science , 244 : 48 – 52 .
   PubMed Web of Science ®Google Scholar
• Zuker , M. and Jacobson , A. B. 1998 . RNA , 4 : 669 – 679 .
   PubMedGoogle Scholar
• Mathews , D. H. , Sabina , J. , Zuker , M. and Turner , D. H. 1999 . J. Mol. Biol. , 288 : 911 – 940 .
   PubMed Web of Science ®Google Scholar
• Lemieux , S. , Oldziej , S. and Major , F. 1998 . “ Nucleic Acids: Qualitative Modeling ” . In Encyclopedia of Computational Chemistry West Sussex , , England : John Wiley & Sons .
   Google Scholar
• Zhang , F. , Lemieux , S. , Wu , X. , St-Arnaud , D. , McMurray , C. T. , Major , F. and Anderson , D. 1998 . Mol. Cell , 2 : 141 – 147 .
   PubMed Web of Science ®Google Scholar
• Case , D. A. , Pearlman , D. A. , Caldwell , J. W. , Cheatham , T. E. III , Ross , W. S. , Simmerling , C. L. , Darden , T. A. , Merz , K. M. , Stanton , R. V. , Cheng , A. L. , Vincent , J. J. , Crowley , M. , Ferguson , D. M. , Radmer , R. J. , Seibel , G. L. , Singh , U. C. , Weiner , P. K. and Kollman , P. A. 1997 . AMBER 1997 San Francisco : University of California .
   Google Scholar
• Case , D. A , Pearlman , D. A. , Caldwell , J. W. , Cheatham , T. E. III , Ross , W. S. , Simmerling , C. L. , Darden , T. A. , Merz , K. M. , Stanton , R. V. , Cheng , A. L. , Vincent , J. J. , Crowley , M. , Ferguson , D. M. , Radmer , R. J. , Seibel , G. L. , Singh , U. C. , Weiner , P. K. and Kollman , P. A. 2000 . AAMBER San Francisco : University of California .
   Google Scholar
• Cornell , W. D. , Cieplak , P. , Bayly , C. I. , Gould , I. R. , Merz , K. M. , Ferguson , D. M. , Spellmeyer , D. C. , Fox , T. , Caldwell , J. W. and Kollman , P. A. 1995 . J. Am. Chem. Soc. , 117 : 5179 – 5197 .
   Web of Science ®Google Scholar
• Cornell , W. D. , Cieplak , P. , Bayly , C. I. , Gould , I. R. , Merz , K. M. , Ferguson , D. M. , Spellmeyer , D. C. , Fox , T. , Caldwell , J. W. and Kollman , P. A. 1996 . J. Am. Chem. Soc. , 118 : 2309
   Web of Science ®Google Scholar
• Allain , F. H.T. and Varani , G. 1995 . J. Mol. Biol. , 250 : 333 – 353 .
   PubMed Web of Science ®Google Scholar
• Miller , J. L. and Kollman , P. A. 1997 . J. Mol. Biol. , 270 : 436 – 450 .
   PubMed Web of Science ®Google Scholar
• Srinivasan , J. , Cheatham , T. E. III , Cieplak , P. , Kollman , P. A. and Case , D. A. 1998 . J. Am. Chem. Soc. , 120 : 9401 – 9409 .
   Web of Science ®Google Scholar
• Massova , I. and Kollman , P. A. 1999 . J. Am. Chem. Soc. , 121 : 8133 – 8143 .
   Web of Science ®Google Scholar
• Still , W. C. , Tempczyk , A. , Hawley , R. C. and Hendrickson , T. 1990 . J. Am. Chem. Soc. , 112 : 61276129
   Google Scholar
• Sanner , M. F. , Olson , A. J. and Spehner , J. C. 1996 . Biopolymers , 38 : 305 – 320 .
   PubMed Web of Science ®Google Scholar
• Clementi , C. , Nymeyer , H. and Onuchic , J. N. 2000 . J. Mol. Biol. , 298 : 937 – 953 .
   PubMed Web of Science ®Google Scholar
• Treiber , D. K. and Williamson , J. R. 1999 . Curr. Opin. Struct. Biol. , 9 : 339 – 345 .
   PubMed Web of Science ®Google Scholar
• Pan , J. , Thirumakai , D. and Woodson , S. A. 1997 . J. Mol. Biol. , 273 : 7 – 13 .
   PubMed Web of Science ®Google Scholar
• Pan , J. and Woodson , S. A. 1999 . J. Mol. Biol. , 294 : 955 – 965 .
   PubMed Web of Science ®Google Scholar
• Rook , M. S. , Treiber , D. K. and Williamson , J. R. 1998 . J. Mol. Biol. , 281 : 609 – 620 .
   PubMed Web of Science ®Google Scholar
• Sclavi , B. , Sullivan , M. , Chance , M. R. , Brenowitz , M. and Woodson , S. A. 1998 . Science , 279 : 1940 – 1943 .
   PubMed Web of Science ®Google Scholar
• Chen , S. J. and Dill , K. A. 2000 . Proc. Natl. Acad. Sci.USA , 97 : 646 – 651 .
   PubMed Web of Science ®Google Scholar
• Gautheret , D. and Gutell , R. R. 1997 . Nucl. Acids Res. , 25 : 1559 – 1564 .
   PubMedGoogle Scholar
• Gmeiner , W. H. and Walberer , B. J. 2000 . “ Base pairing in DNA: unusual patterns. In the ” . In Encyclopedia of Life Sciences Nature Publishing . In Press
   Google Scholar
• Holbrook , S. R. , Cheong , C. , Tinoco , I. Jr. and Kim , S. H. 1991 . Nature , 353 : 579 – 581 .
   PubMed Web of Science ®Google Scholar
• Hermann , T. and Patel , D. J. 1999 . J. Mol. Biol. , 294 : 829 – 849 .
   PubMedGoogle Scholar
• Saenger , W. 1984 . Principles of Nucleic Acid Structure New York : Springer-Verlag .
   Google Scholar