Conformational Characteristics and Correlations in Crystal Structures of Nucleic Acid Oligonucleotides: Evidence for Sub-states

References and Footnotes

• Tisne , C. , Hantz , E. , Hartmann , B. and Delepierre , M. 1998 . J. Mol. Biol. , 279 : 127 – 142 .
   PubMed Web of Science ®Google Scholar
• Tisne , C. , Hartmann , B. and Delepierre , M. 1999 . Biochemistry , 38 : 3883 – 3894 .
   PubMed Web of Science ®Google Scholar
• Tisne , C. , Delepierre , M. and Hartmann , B. 1999 . J. Mol. Biol. , 293 : 139 – 150 .
   PubMed Web of Science ®Google Scholar
• Schroeder , S. A. , Roongta , V. , Fu , J. M. , Jones , C. R. and Gorenstein , D. G. 1989 . Biochemistry , 28 : 8292 – 8303 .
   PubMed Web of Science ®Google Scholar
• van Dam , L. , Korolev , N. and Nordenskiold , L. 2002 . Nucleic Acids Res. , 30 : 419 – 428 .
   PubMed Web of Science ®Google Scholar
• Cohen , S. S. 1998 . A Guide of Polyamides N.Y. : Oxford University Press .
   Google Scholar
• Shah , N. , Thomas , T. , Shirahata , A. , Sigal , L. H. and Thomas , T. J. 1999 . Biochemistry , 38 : 14763 – 14774 .
   PubMed Web of Science ®Google Scholar
• Geahigan , K. B. , Meints , G. A. , Hatcher , M. E. , Orban , J. and Drobny , G. P. 2000 . Biochemistry , 39 : 4939 – 4946 .
   PubMed Web of Science ®Google Scholar
• Wellenzohn , B. , Flader , W. , Winger , R. H. , Hallbrucker , A. , Mayer , E. and Liedl , K. R. 2001 . J. Am. Chem. Soc. , 123 : 5044 – 5049 .
   PubMed Web of Science ®Google Scholar
• Wellenzohn , B. , Flader , W. , Winger , R. H. , Hallbrucker , A. , Mayer , E. and Liedl , K. R. 2002 . Biochemistry , 41 : 4088 – 4095 .
   PubMed Web of Science ®Google Scholar
• Hartmann , B. , Sullivan , M. and Harris , L. 2002 . Biopolymers , 68 : 250 – 264 .
   Google Scholar
• Hartmann , B. , Piazzola , D. and Lavery , R. 1993 . Nucleic Acids Res. , 21 : 561 – 568 .
   PubMed Web of Science ®Google Scholar
• Bertrand , H. , Ha-Duong , T. , Fermandjian , S. and Hartmann , B. 1998 . Nucleic Acids Res. , 26 : 1261 – 1267 .
   PubMed Web of Science ®Google Scholar
• Winger , R. H. , Liedl , K. R. , Rüdisser , S. , Pichler , A. , Hallbrucker , A. and Mayer , E. 1998 . J. Phys. Chem. B , 102 : 8934 – 8940 .
   Web of Science ®Google Scholar
• van Dam , L. and Levitt , M. H. 2000 . J. Mol. Biol. , 304 : 541 – 561 .
   PubMed Web of Science ®Google Scholar
• Nekludova , L. and Pabo , C. O. 1994 . Proc. Natl Acad. Sci. USA , 91 : 6948 – 6952 .
   PubMed Web of Science ®Google Scholar
• Gorin , A. A. , Zhurkin , V. B. and Olson , W. K. 1995 . J. Mol. Biol. , 247 : 34 – 48 .
   PubMed Web of Science ®Google Scholar
• Suzuki , M. and Yagi , N. 1996 . J. Mol. Biol. , 255 : 677 – 687 .
   PubMedGoogle Scholar
• Suzuki , M. , Amano , N. , Kakinuma , J. and Tateno , M. 1997 . J. Mol. Biol. , 274 : 421 – 435 .
   PubMed Web of Science ®Google Scholar
• Olson , W. K. , Gorin , A. A. , Lu , X. J. , Hock , L. M. and Zhurkin , V. B. 1998 . Proc. Natl Acad. Sci. USA , 95 : 11163 – 11168 .
   PubMed Web of Science ®Google Scholar
• Laughton , C. and Luisi , B. 1999 . J. Mol. Biol. , 288 : 953 – 963 .
   PubMedGoogle Scholar
• Lu , X. J. , Shakked , Z. and Olson , W. K. 2000 . J. Mol. Biol. , 300 : 819 – 840 .
   PubMed Web of Science ®Google Scholar
• Berman , H. M. 1997 . Biopolymers , 44 : 23 – 44 .
   PubMed Web of Science ®Google Scholar
• Schneider , B. , Neidle , S. and Berman , H. M. 1997 . Biopolymers , 42 : 113 – 124 .
   PubMed Web of Science ®Google Scholar
• Beckers , M. L. M. and Buydens , L. M. C. 1998 . J. Comput. Chem. , 19 : 695 – 715 .
   Google Scholar
• Berman , H. M. , Olson , W. K. , Beveridge , D. L. , Westbrook , J. , Gelbin , A. , Demeny , T. , Hsieh , S. H. , Srinivasan , A. R. and Schneider , B. 1992 . Biophys. J. , 63 : 751 – 759 .
   PubMed Web of Science ®Google Scholar
• Hahn , M. and Heinemann , U. Acta Crystallogr., Sect. D: Biol. Crystallogr. , 49 468 – 477 . (1993)
   PubMedGoogle Scholar
• Saenger , W. 1984 . Principles of Nucleic Acid Structure N.Y. : Springer-Verlag New York Inc. .
   Google Scholar
• Foloppe , N. and MacKerell , A. D. J. 1999 . J. Phys. Chem. B , 103 : 10955 – 10964 .
   Google Scholar
• Lavery , R. and Sklenar , H. 1988 . J. Biomol. Struct. Dyn. , 6 : 63 – 91 .
   PubMed Web of Science ®Google Scholar
• Stofer , E. and Lavery , R. 1994 . Biopolymers , 34 : 337 – 346 .
   PubMed Web of Science ®Google Scholar
• Dickerson , R. E. , Bansal , M. , Calladine , C. R. , Diekmann , S. , Hunter , W. N. , Kennard , O. , von Kitzing , E. , Lavery , R. , Nelson , H. C. M. , Olson , W. K. , Saenger , W. , Sklenar , H. , Soumpasis , D. M. , Tung , C.-S. , von Kitzing , E. , Wang , A. H. J. and Zhurkin , V. D. 1989 . EMBO J. , 8 : 1 – 4 .
   PubMed Web of Science ®Google Scholar
• Bosch , D. , Foloppe , N. , Pastor , N. , Pardo , L. and Campillo , M. 2001 . J. Mol. Struct. , 537 : 283 – 305 .
   Google Scholar
• Hartmann , B. and Lavery , R. 1996 . Q. Rev. Biophys. , 29 : 309 – 368 .
   PubMed Web of Science ®Google Scholar
• Ojha , R. P. , Dhingra , M. M. , Sarma , M. H. , Shibata , M. , Farrar , M. , Turner , C. J. and Sarma , R. H. 1999 . Eur. J. Biochem. , 265 : 35 – 53 .
   PubMedGoogle Scholar
• Isaacs , R. J. and Spielmann , H. P. 2001 . J. Mol. Biol. , 311 : 149 – 160 .
   PubMed Web of Science ®Google Scholar
• Gorler , A. , Ulyanov , N. B. and James , T. L. 2000 . J. Biomol. NMR , 16 : 147 – 164 .
   PubMed Web of Science ®Google Scholar
• Meints , G. A. , Karlsson , T. and Drobny , G. P. 2001 . J. Am. Chem. Soc. , 123 : 10030 – 10038 .
   PubMedGoogle Scholar
• Weisz , K. , Shafer , R. H. , Egan , W. and James , T. L. 1994 . Biochemistry , 33 : 354 – 366 .
   PubMed Web of Science ®Google Scholar
• Soler-Lopez , M. , Malinina , L. and Subirana , J. A. 2000 . J. Biol. Chem. , 275 : 23034 – 23044 .
   PubMedGoogle Scholar
• Fratini , A. V. , Kopka , M. L. , Drew , H. R. and Dickerson , R. E. 1982 . J. Biol. Chem. , 257 : 14686 – 14707 .
   PubMed Web of Science ®Google Scholar
• Karslake , C. , Schroeder , S. , Wang , P. L. and Gorenstein , D. G. 1990 . Biochemistry , 29 : 6578 – 6584 .
   PubMed Web of Science ®Google Scholar
• Grzeskowiak , K. , Yanagi , K. , Prive , G. G. and Dickerson , R. E. 1991 . J. Biol. Chem. , 266 : 8861 – 8883 .
   PubMed Web of Science ®Google Scholar
• Gorenstein , D. G. 1994 . Chem. Rev. , 94 : 1315 – 1338 .
   Web of Science ®Google Scholar
• Castagne , C. , Murphy , E. C. , Gronenborn , A. M. and Delepierre , M. 2000 . Eur. J. Biochem. , 267 : 1223 – 1229 .
   PubMedGoogle Scholar
• Broyde , S. B. , Wartell , R. M. , Stellman , S. D. , Hingerty , B. and Langridge , R. 1975 . Biopolymers , 14 : 1597 – 1613 .
   PubMedGoogle Scholar
• Lefebvre , A. , Mauffret , O. , Hartmann , B. , Lescot , E. and Fermandjian , S. 1995 . Biochemistry , 34 : 12019 – 12028 .
   PubMedGoogle Scholar
• Lefebvre , A. , Mauffret , O. , Lescot , E. , Hartmann , B. and Fermandjian , S. 1996 . Biochemistry , 35 : 12560 – 12569 .
   PubMed Web of Science ®Google Scholar
• Rhodes , D. and Klug , A. 1980 . Nature , 286 : 573 – 578 .
   PubMed Web of Science ®Google Scholar
• Peck , L. J. and Wang , J. C. 1981 . Nature , 292 : 375 – 378 .
   PubMed Web of Science ®Google Scholar
• Strauss , F. , Gaillard , C. and Prunell , A. 1981 . Eur. J. Biochem. , 118 : 215 – 222 .
   PubMedGoogle Scholar
• Calladine , C. R. and Drew , H. R. 1984 . J. Mol. Biol. , 178 : 773 – 782 .
   PubMed Web of Science ®Google Scholar
• Ulyanov , N. B. and Zhurkin , V. B. 1984 . J. Biomol. Struct. Dyn. , 2 : 361 – 385 .
   PubMed Web of Science ®Google Scholar
• Conn , G. L. , Brown , T. and Leonard , G. A. 1999 . Nucleic Acids Res. , 27 : 555 – 561 .
   PubMed Web of Science ®Google Scholar
• Winger , R. H. , Liedl , K. R. , Pichler , A. , Hallbrucker , A. and Mayer , E. 1999 . J. Biomol. Struct. Dyn. , 17 : 223 – 235 .
   PubMed Web of Science ®Google Scholar
• Isaacs , R. J. and Spielmann , H. P. 2001 . J. Mol. Biol. , 307 : 525 – 540 .
   PubMedGoogle Scholar
• Trantirek , L. , Stefl , R. , Vorlickova , M. , Koca , J. , Sklenar , V. and Kypr , J. 2000 . J. Mol. Biol. , 297 : 907922
   Google Scholar
• Subirana , J. A. and Faria , T. 1997 . Biophys. J. , 73 : 333 – 338 .
   PubMed Web of Science ®Google Scholar
• Rozenberg , H. , Rabinovich , D. , Frolow , F. , Hegde , R. and Shakked , Z. 1998 . Proc. Natl Acad. Sci. USA , 95 : 15194 – 15199 .
   PubMedGoogle Scholar
• Varnai , P. , Djuranovic , D. , Lavery , R. and Hartmann , B. 2002 . Nucleic Acids Res. , 30 : 5398 – 5406 .
   PubMed Web of Science ®Google Scholar
• Denisov , A. Y. , Zamaratski , E. V. , Maltseva , T. V. , Sandstrom , A. , Bekiroglu , S. , Altmann , K. H. , Egli , M. and Chattopadhyaya , J. 1998 . J. Biomol. Struct. Dyn. , 16 : 547 – 568 .
   PubMed Web of Science ®Google Scholar