Evidence for Long Poly(dA).Poly(dT) Tracts in D. Discoideum DNA at High Frequencies and Their Preferential Avoidance of Nucleosomal DNA Core Regions

References and Footnotes

• Marx , K. A. , Bizzaro , J. W. , Assil , I. Q. and Blake , R. D. 1997 . “ Statistical Mechanics in Physics and Biology ” . In Proceedings Materials Research Society Edited by: Wirtz , D. and Halsey , T. C. Vol. 463 , 147 – 152 . Pittsburgh , PA
   Google Scholar
• Marx , K. A. , Assil , I. Q. , Bizzaro , J. W. and Blake , R. D. 1998 . J. Biomol. Str. & Dyn. , 16 : 329 – 340 .
   PubMed Web of Science ®Google Scholar
• Marx , K. A. , Hess , S. T. and Blake , R. D. 1993 . J. Biomol. Str. & Dyn. , 11 : 57 – 66 .
   PubMed Web of Science ®Google Scholar
• Alexeev , D. G. , Lipanov , A. A. and Skuratovskii , I. 1987 . Nature , 325 : 821 – 823 .
   PubMed Web of Science ®Google Scholar
• Ayamami , J. , Coll , M. , Frederik , C. A. , Wang , A. H. and Rich , A. 1989 . Nucleic Acids Res. , 17 : 3229 – 3245 .
   PubMed Web of Science ®Google Scholar
• Arnott , S. , Chandrasekaran , R. , Birdsall , D. L. , Leslie , A. G. and Ratliff , R. L. 1980 . Nature , 283 : 743 – 745 .
   PubMed Web of Science ®Google Scholar
• Nelson , H. C. , Finch , J. T. , Luisi , B. F. and Klug , A. 1987 . Nature , 330 : 221 – 226 .
   PubMed Web of Science ®Google Scholar
• Rhodes , D. 1979 . Nucleic Acids Res. , 6 : 1805 – 1816 .
   PubMed Web of Science ®Google Scholar
• Simpson , R. T. and Kunzler , P. 1979 . Nucleic Acids Res. , 6 : 1387 – 1415 .
   PubMed Web of Science ®Google Scholar
• Satchwell , S. C. , Drew , H. R. and Travers , A. A. 1986 . J. Mol. Biol. , 191 : 659 – 675 .
   PubMed Web of Science ®Google Scholar
• Shimizu , M. , Mori , T. , Sakurai , T. and Shindo , H. 2000 . The EMBO J. , 19 : 3358 – 3365 .
   PubMed Web of Science ®Google Scholar
• Widlund , H. R. , Cao , H. , Simonsson , S. , Magnusson , E. , Simonsson , T. , Nielsen , P. E. , Kahn , J. D. , Crothers , D. M. and Kubista , M. 1997 . J. Mol. Biol. , 267 : 807 – 817 .
   PubMed Web of Science ®Google Scholar
• Englander , E. W. and Howard , B. H. 1996 . J. Biol. Chem. , 271 : 5819 – 5823 .
   PubMed Web of Science ®Google Scholar
• Suter , B. , Schnappauf , G. and Thoma , F. 2000 . Nucleic Acids Res. , 28 : 4083 – 4089 .
   PubMed Web of Science ®Google Scholar
• Hori , R. and Firtel , R. A. 1994 . Nucleic Acids Res. , 22 : 5099 – 5111 .
   PubMed Web of Science ®Google Scholar
• Iyer , V. and Struhl , K. 1995 . The EMBO J. , 14 : 2570 – 2579 .
   PubMed Web of Science ®Google Scholar
• Fashena , S. , Reeves , R. and Ruddle , N. H. 1992 . Mol. Cell Biol. , 12 : 894 – 903 .
   PubMed Web of Science ®Google Scholar
• Zhou , Y. , Bizzaro , J. W. and Marx , K. A. 2004 . BMC Genomics , 5 : 95 – 106 .
   PubMed Web of Science ®Google Scholar
• Marx , K. A. , Hess , S. T. and Blake , R. D. 1994 . J. Biomol. Str. & Dyn. , 12 : 235 – 246 .
   PubMed Web of Science ®Google Scholar
• Kunkel , T. A. and Soni , A. 1988 . J. Biol. Chem. , 263 : 14784 – 14789 .
   PubMed Web of Science ®Google Scholar
• Fujii , S. , Akyama , M. , Aoki , K. , Sugaya , Y. , Higuchi , K. , Hiraoka , M. , Miki , Y. , Saitoh , N. , Yoshiyama , K. , Ihara , K. , Seki , M. , Ohtsubo , E. and Maki , H. 1999 . J. Mol. Biol. , 298 : 835 – 850 .
   Google Scholar
• Bakke , A. C. , Wu , J. R. and Bonner , J. 1978 . Proc. Natl. Acad. Sci. USA , 75 : 705 – 709 .
   PubMed Web of Science ®Google Scholar
• Glockner , G. , Eichinger , L. , Szafranski , K. , Pachebat , J. A. , Bankler , A. T. , Dear , P. H. , Lehmann , R. , Baumgart , C. , Parra , G. , Abrll , J. F. , Gulgo , R. , Kumpf , K. , Tungall , B. , Cox , E. , Qualle , M. A. , Platzer , M. , Rosenthal , A. and Noegel , A. A. 2002 . Nature , 418 : 79 – 85 .
   PubMed Web of Science ®Google Scholar
• Kreppel , L. , Fey , P. , Gaudet , P. , Just , E. , Kibbe , W. A. , Chisholm , R. L. and Kimmel , A. R. 2004 . Nuc. Acids Res. , 32 : D332 – D333 .
   PubMed Web of Science ®Google Scholar
• Firtel , R. , Cockburn , A. , Frankel , G. and Hershfeld , V. 1976 . J. Mol. Biol. , 102 : 831 – 852 .
   PubMed Web of Science ®Google Scholar
• Attimonelli , M. , Liuni , S. and Pesoli , G. 1996 . Comput. Applic. Biosci. , 12 : 1 – 8 .
   PubMedGoogle Scholar
• Blake , R. D. , Bizzaro , J. W. , Blake , J. D. , Day , G. R. , Delcourt , S. G. , Knowles , G. , Marx , K. A. and Lucia , S. 1999 . J. Bioinformatics , 15 : 370 – 375 .
   PubMed Web of Science ®Google Scholar
• Bizzaro , J. W. and Marx , K. A. 2003 . BMC Bioinformatics , 4 : 22 – 27 .
   PubMed Web of Science ®Google Scholar
• Patel , D. J. 1979 . Eur. J. Biochem. , 99 : 369 – 378 .
   PubMedGoogle Scholar
• Mathews , H. R. , Johnson , E. M. , Steer , W. , Bradbury , M. and Allfrey , V. G. 1978 . Eur. J. Biochem. , 82 : 569 – 576 .
   PubMedGoogle Scholar
• Marx , K. A. , Bizzaro , J. W. , Blake , R. D. and Tasi , M. H. 2000 . Molecular and Biochemical Parasitology , 107 : 303 – 307 .
   PubMed Web of Science ®Google Scholar
• Marx , K. A. 1977 . Biochem. Biophys. Res. Commun. , 78 : 777 – 784 .
   PubMed Web of Science ®Google Scholar
• Van Holde , K. E. 1989 . Chromatin. New York : Springer-Verlag .
   Google Scholar
• Felitici , P. , Aranda , C. , Gonzalez , A. and Ballario , P. 1998 . Biochem. Biophys. Res. Commun. , 242 : 84 – 87 .
   PubMed Web of Science ®Google Scholar
• Koch , K. A. and Thiele , D. J. 1999 . J. Biol. Chem. , 247 : 23752 – 23760 .
   Google Scholar
• Wu , H. M. and Crothers , D. M. 1994 . Nature , 308 : 509 – 513 .
   Google Scholar
• Keith , K. C. and Fitzgerald-Hayes , M. 2000 . Genetics , 156 : 973 – 981 .
   PubMed Web of Science ®Google Scholar
• Eckdahl , T. T. and Anderson , J. A. 1987 . Nucleic Acids Res. , 15 : 8531 – 8545 .
   PubMed Web of Science ®Google Scholar
• Marx , K. A. and Long , D. D. 2005 . BMC Genomics , submitted
   Google Scholar
• Winter , E. and Varshavsky , A. 1989 . The EMBO J. , 8 : 1867 – 1877 .
   PubMed Web of Science ®Google Scholar
• Garreau , H. and Williams , J. G. 1983 . Nucleic Acids Res. , 11 : 8473 – 8484 .
   PubMed Web of Science ®Google Scholar
• Horn , J. , Dietz-Schmidt , A. , Zundorf , I. , Garin , J. , Dingermann , T. and Winckler , T. 1999 . Eur. J. Biochem. , 265 : 441 – 448 .
   PubMedGoogle Scholar