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Articles

Viral/plasmid captures in Crenarchaea

, , &
Pages 546-554 | Received 14 Nov 2012, Accepted 26 Feb 2013, Published online: 10 May 2013

References

  • Basta, T., Smyth, J., Forterre, P., Prangishvili, D., & Peng, X. (2009). Novel archaeal plasmid pAH1 and its interactions with the lipothrixvirus AFV1. Molecular Microbiology, 71, 23–34.
  • Contursi, P., Jensen, S., Aucelli, T., Rossi, M., Bartolucci, S., & She, Q. (2006). Characterization of the Sulfolobus host–SSV2 virus interaction. Extremophiles, 10, 615–627.
  • Duby, S. E. N., Kwon, H. J., Tirumalai, R. S., Ellenberger, T., & Landy, A. (1998). Similarities and differences among 105 members of the Int family of site-specific recombinases. Nucleic Acids Research, 26, 391–406.
  • Esposito, D., & Scocca, J. J. (1997). The integrase family of tyrosine recombinases. evolution of a conserved active site domain. Nucleic Acids Research, 25, 3605–3614.
  • Garrett, R. A., Forterre, P., Gribaldo, S., Redder, P., Greve, B., Brugger, K., … She, Q. (2004). Archaeal plasmids. In B. E. Funnell & G. J. Phillips (Eds.), Plasmid biology (pp. 377–392). Washington, DC: ASM Press.
  • Grainge, I., & Jayaram, M. (1999). The integrase family of recombinase: Organization and function of the active site. Molecular Microbiology, 33, 449–456.
  • Greve, B., Jensen, S., Brügger, K., Zillig, W., & Garrett, R. A. (2004). Genomic comparison of archaeal conjugative plasmids from Sulfolobus. Archaea, 1, 231–239.
  • Mallick, B., Chakrabarti, J., Sahoo, S., Ghosh, Z., & Das, S. (2005). Identity elements of archaeal tRNA. DNA Research, 12, 235–246.
  • Mochizuki, T., Sako, Y., & Prangishvili, D. (2011). Provirus induction in hyperthermophilic archaea. characterization of Aeropyrum pernix spindle-shaped virus 1 and Aeropyrum pernix ovoid virus 1. Journal of Bacteriology, 193, 5412–5419.
  • Prangishvili, D., Basta, T., & Garrett, R. A. (2008). Crenarchaeal viruses: Morphotypes and genomes in encyclopedia of virology (3rd ed.) (pp. 587–595). Oxford: Elsevier.
  • Prangishvili, D., & Garrett, R. A. (2000). Viruses of hyperthermophilic Crenarchaea. Trends in Microbiology, 13, 535–542.
  • Prangishvili, D., Garrett, R. A., & Koonin, E. (2006). Evolutionary genomics of archaeal viruses: Unique viral genomes in the third domain of life. Virus Research, 117, 52–67.
  • Reiter, W. D., Palm, P., & Yeats, S. (1989). Transfer RNA genes frequently serve as integration sites for prokaryotic genetic elements. Nucleic Acids Residue, 17, 1907–1914.
  • Robinson, N. P., & Bell, S. D. (2007). Extrachromosomal element capture and the evolution of multiple replication origins in archaeal chromosomes. Proceedings of the National academy of Sciences of the United States of America, 104, 5806–5811.
  • Serre, M. C., Letzelter, C., Garel, J. R., & Duguet, M. (2002). Cleavage properties of an archaeal site-specific recombinase, the SSV1 Integrase. Journal of Biological Chemistry, 277, 16758–16767.
  • She, Q., Brugger, K., & Chen, L. (2002). Archaeal integrative genetic elements and their impact on genome evolution. Research in Microbiology, 153, 325–332.
  • She, Q., Peng, X., Zillig, W., & Garrett, R. A. (2001). Gene capture in archaeal chromosomes. Nature, 409, 478.
  • Soll, D., & Randau, L. (2008). Transfer RNA genes in pieces. EMBO reports, 9, 623–628.
  • Stedman, K. M., She, Q., Phan, H., Arnold, H. P., Holz, I., Garrett, R. A., & Zillilg, W. (2003). Relationships between fuselloviruses infecting the extremely thermophilic archaeon Sulfolobus. SSV1 and SSV2. Research in Microbiology, 154, 295–302.
  • Szenes, A., & Pál, G. (2012). Mapping hidden potential identity elements by computing the average discriminating power of individual tRNA positions. DNA Research, 19, 245–258.
  • Wang, Y., Duan, Z., Zhu, H., Guo, Z., Wang, Z., Zhou, J., … Huang, L. (2007). A novel Sulfolobus non-conjugative extrachromosomal genetic element capable of integration into the host genome and spreading in the presence of a fusellovirus. Virology, 363, 124–133.
  • Williams, K. P. (2002). Integration sites for genetic elements in prokaryotic tRNA and tmRNA genes: Sublocation preference of integrase subfamilies. Nucleic Acids Research, 30, 866–875.
  • Zhao, S., & Williams, K. P. (2002). Integrative genetic element that reverses the usual target gene orientation. Journal of Bacteriology, 184, 859–860.

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