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Letter to the Editor

Insights into the structural integrity and dynamics of siRNA–PAZ complex

&
Pages 2987-2996 | Received 23 Apr 2015, Accepted 16 Aug 2016, Published online: 23 Nov 2016

References

  • Amadei, A., Linssen, A. B., & Berendsen, H. J. (1993). Essential dynamics of proteins. Proteins: Structure, Function, and Genetics, 17, 412–425. doi:10.1002/prot.340170408
  • Chen, C. C., Er, T. K., Liu, Y. Y., Hwang, J. K., Barrio, M. J., Rodrigo, M., … Herreos-Villanueva, M. (2013). Computational analysis of KRAS mutations: Implications for different effects on the KRAS p.G12D and p.G13D mutations. PLoS One, 8, e55793. doi:10.1371/journal.pone.0055793
  • Eisenmesser, E. Z., Millet, O., Labeikovsky, W., Korzhnev, D. M., Wolf-Watz, M., Bosco, D. A., … Kern, D. (2005). Intrinsic dynamics of an enzyme underlies catalysis. Nature, 438, 117–121. doi:10.1038/nature04105
  • Esther, S. F., & Isaiah, T. A. (2014). Strength of a bifurcated H bond. PNAS, 111, 4085–4090. doi:10.1073/pnas.1319827111
  • Grünberg, R., Nilges, M., & Leckner, J. (2006). Flexibility and conformational entropy in protein–protein binding. Structure, 14, 683–693. doi:10.1016/j.str.2006.01.014
  • Jason, E. D., Daniel, W. K., & William, F. D. (2011). Salt bridges: Geometrically specific, designable interactions. Proteins, 79, 898–915. doi:10.1002/prot.22927
  • Kandeel, M., & Kitade, Y. (2013). Computational analysis of siRNA recognition by the Ago2 PAZ domain and identification of the determinants of siRNA–induced gene silencing. PLoS One, 8, e57140. doi:10.1371/journal.pone.0057140
  • Lee, B., & Richards, F. M. (1971). The interpretation of protein structures: Estimation of static accessibility. Journal of Molecular Biology, 55, 379–400. doi:10.1016/0022-2836(71)90324-X
  • Ma, J. B., Ye, K., & Patel, D. J. (2004). Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain. Nature, 429, 318–322. doi:10.1038/nature02519
  • Meshkin, A., & Ghafuri, H. (2010). Prediction of relative solvent accessibility by support vector regression and best-first method. EXCLI Journal, 9, 29–38. Retrieved from http://www.excli.de/volume9.php
  • Petersen, T. N., Lundegaard, C., Nielsen, M., Bohr, H., Bohr, J., Brunak, S., … Lund, O. (2000). Prediction of protein secondary structure at 80% accuracy. Proteins: Structure, Function, and Genetics, 41, 17–20. Retrieved from http://www.ncbi.nlm.nih.gov/pubmed/1094438910.1002/(ISSN)1097-0134
  • Rana, T. M. (2007). Illuminating the silence: Understanding the structure and function of small RNAs. Nature Reviews Molecular Cell Biology, 8, 23–36. doi:10.1038/nrm2085
  • Sanjeev, B. S. (2004). Ankush, Indian Institute of Science.
  • Sanjeev, B. S., & Vishveshwara, S. (2004). Protein-water interactions in ribonuclease A and angiogenin: A molecular dynamics study. Proteins: Structure, Function, and Bioinformatics, 55, 915–923. doi:10.1002/prot.20114
  • Tomari, Y., & Zamore, P. D. (2005). Perspective: Machines for RNAi. Genes & Development, 19, 517–529. doi:10.1101/gad.1284105
  • Wu, D., Smith, S., Mahan, H., Jernigan, R. L., & Zhijun, W. (2011). Analysis of protein dynamics using local-DME calculations. International Journal of Bioinformatics Research and Applications, 7, 146–161. doi:10.1504/IJBRA.2011.040093

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