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Research Articles

Structural modulation of factor VIIa by full-length tissue factor (TF1-263): implication of novel interactions between EGF2 domain and TF

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Pages 621-633 | Received 13 Oct 2016, Accepted 19 Jan 2017, Published online: 17 Feb 2017

References

  • Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990). Basic local alignment search tool. Journal of Molecular Biology, 215, 403–410.10.1016/S0022-2836(05)80360-2
  • Bach, R., Konigsberg, W. H., & Nemerson, Y. (1988). Human tissue factor contains thioester-linked palmitate and stearate on the cytoplasmic half-cystine. Biochemistry, 27, 4227–4231.10.1021/bi00412a004
  • Banner, D. W., D’Arcy, A., Chène, C., Winkler, F. K., Guha, A., Konigsberg, W. H., … Kirchhofer, D. (1996). The crystal structure of the complex of blood coagulation factor VIIa with soluble tissue factor. Nature, 380, 41–46.10.1038/380041a0
  • Brooks, B. R., Bruccoleri, R. E., Olafson, B. D., States, D. J., Swaminathan, S., & Karplus, M. (1983). CHARMM: A program for macromolecular energy, minimization, and dynamics calculations. Journal of Computational Chemistry, 4, 187–217.10.1002/(ISSN)1096-987X
  • Butenas, S., Lawson, J. H., Kalafatis, M., & Mann, K. G. (1994). Cooperative interaction of divalent metal ions, substrate, and tissue factor with factor VIIa. Biochemistry, 33, 3449–3456.10.1021/bi00177a039
  • Butenas, S., Orfeo, T., & Mann, K. G. (2009). Tissue factor in coagulation: Which? Where? When? Arteriosclerosis, Thrombosis, and Vascular Biology, 29, 1989–1996.10.1161/ATVBAHA.108.177402
  • Colina, C. M., Venkateswarlu, D., Duke, R., Perera, L., & Pedersen, L. G. (2006). What causes the enhancement of activity of factor VIIa by tissue factor? Journal of Thrombosis and Haemostasis, 4, 2726–2729.10.1111/jth.2006.4.issue-12
  • Darden, T., York, D., & Pedersen, L. (1993). Particle mesh Ewald: An N⋅log( N ) method for Ewald sums in large systems. The Journal of Chemical Physics, 98, 10089.10.1063/1.464397
  • Davie, E. W., Fujikawa, K., & Kisiel, W. (1991). The coagulation cascade: Initiation, maintenance, and regulation. Biochemistry, 30, 10363–10370.10.1021/bi00107a001
  • Falls, L. A., Furie, B. C., Jacobs, M., Furie, B., & Rigby, A. C. (2001). The omega-loop region of the human prothrombin gamma-carboxyglutamic acid domain penetrates anionic phospholipid membranes. Journal of Biological Chemistry, 276, 23895–23902.10.1074/jbc.M008332200
  • Feller, S. E., Zhang, Y., Pastor, R. W., & Brooks, B. R. (1995). Constant pressure molecular dynamics simulation: The Langevin piston method. The Journal of Chemical Physics, 103, 4613.10.1063/1.470648
  • Furie, B., & Furie, B. C. (1988). The molecular basis of blood coagulation. Cell, 53, 505–518.10.1016/0092-8674(88)90567-3
  • Hagen, F. S., Gray, C. L., O’Hara, P., Grant, F. J., Saari, G. C., Woodbury, R. G., … Kurachi, K. (1986). Characterization of a cDNA coding for human factor VII. Proceedings of the National Academy of Sciences, 83, 2412–2416.10.1073/pnas.83.8.2412
  • Harlos, K., Martin, D. M., O’Brien, D. P., Jones, E. Y., Stuart, D. I., Polikarpov, I., … Boys, C. W. (1994). Crystal structure of the extracellular region of human tissue factor. Nature, 370, 662–666.10.1038/370662a0
  • Higashi, S., Matsumoto, N., & Iwanaga, S. (1996). Molecular mechanism of tissue factor-mediated acceleration of factor VIIa activity. The Journal of Biological Chemistry, 271, 26569–26574.
  • Humphrey, W., Dalke, A., & Schulten, K. (1996). VMD: Visual molecular dynamics. Journal of Molecular Graphics, 14, 33–38.10.1016/0263-7855(96)00018-5
  • Jo, S., Lim, J. B., Klauda, J. B., & Im, W. (2009). CHARMM-GUI Membrane builder for mixed bilayers and its application to yeast membranes. Biophysical Journal, 97, 50–58.10.1016/j.bpj.2009.04.013
  • Jorgensen, W. L., Chandrasekhar, J., Madura, J. D., Impey, R. W., & Klein, M. L. (1983). Comparison of simple potential functions for simulating liquid water. The Journal of Chemical Physics, 79, 926.10.1063/1.445869
  • Lawson, J. H., Butenas, S., & Mann, K. G. (1992). The evaluation of complex-dependent alterations in human factor VIIa. The Journal of Biological Chemistry, 267, 4834–4843.
  • Lee, C. J., Wu, S., Bartolotti, L. J., & Pedersen, L. G. (2012). Molecular dynamic simulations of the binary complex of human tissue factor (TF(1-242)) and factor VIIa (TF(1-242) /FVIIa) on a 4:1 POPC/POPS lipid bilayer. Journal of Thrombosis and Haemostasis, 10, 2402–2405.10.1111/j.1538-7836.2012.04920.x
  • MacKerell, A. D., Bashford, D., Bellott, M., Dunbrack, R. L., Evanseck, J. D., Field, M. J., … Karplus, M. (1998). All-atom empirical potential for molecular modeling and dynamics studies of proteins. The Journal of Physical Chemistry. B, 102, 3586–3616.10.1021/jp973084f
  • Madsen, J. J., Persson, E., & Olsen, O. H. (2015). Tissue factor activates allosteric networks in factor VIIa through structural and dynamic changes. Journal of Thrombosis and Haemostasis, 13, 262–267.10.1111/jth.2015.13.issue-2
  • Martyna, G. J., Tobias, D. J., & Klein, M. L. (1994). Constant pressure molecular dynamics algorithms. The Journal of Chemical Physics, 101, 4177.10.1063/1.467468
  • McCallum, C. D., Hapak, R. C., Neuenschwander, P. F., Morrissey, J. H., & Johnson, A. E. (1996). The location of the active site of blood coagulation factor VIIa above the membrane surface and its reorientation upon association with tissue factor: A fluorescence energy transfer study. Journal of Biological Chemistry, 271, 28168–28175.10.1074/jbc.271.45.28168
  • McCallum, C. D., Su, B., Neuenschwander, P. F., Morrissey, J. H., & Johnson, A. E. (1997). Tissue factor positions and maintains the factor VIIa active site far above the membrane surface even in the absence of the factor viia gla domain: A fluorescence resonance energy transfer study. Journal of Biological Chemistry, 272, 30160–30166.10.1074/jbc.272.48.30160
  • Muller, Y. A., Ultsch, M. H., & de Vos, A. M. (1996). The crystal structure of the extracellular domain of human tissue factor refined to 1.7 Å resolution. Journal of Molecular Biology, 256, 144–159.10.1006/jmbi.1996.0073
  • Murakami, M. T., Rios-Steiner, J., Weaver, S. E., Tulinsky, A., Geiger, J. H., & Arni, R. K. (2007). Intermolecular interactions and characterization of the novel factor Xa exosite involved in macromolecular recognition and inhibition: Crystal structure of human Gla-domainless factor Xa complexed with the anticoagulant protein NAPc2 from the hematophagou. Journal of Molecular Biology, 366, 602–610.10.1016/j.jmb.2006.11.040
  • Murray, C. J., & Lopez, A. D. (1997). Mortality by cause for eight regions of the world: Global burden of disease study. The Lancet, 349, 1269–1276.10.1016/S0140-6736(96)07493-4
  • Nemerson, Y., & Repke, D. (1985). Tissue factor accelerates the activation of coagulation factor VII: The role of a bifunctional coagulation cofactor. Thrombosis Research, 40, 351–358.10.1016/0049-3848(85)90270-1
  • Neuenschwander, P. F., & Morrissey, J. H. (1994). Roles of the membrane-interactive regions of factor VIIa and tissue factor. The factor VIIa Gla domain is dispensable for binding to tissue factor but important for activation of factor X. The Journal of Biological Chemistry, 269, 8007–8013.
  • Ohkubo, Y. Z., Morrissey, J. H., & Tajkhorshid, E. (2010). Dynamical view of membrane binding and complex formation of human factor VIIa and tissue factor. Journal of Thrombosis and Haemostasis : JTH, 8, 1044–1053.
  • Olsen, O. H., Rand, K. D., Ostergaard, H., & Persson, E. (2007). A combined structural dynamics approach identifies a putative switch in factor VIIa employed by tissue factor to initiate blood coagulation. Protein Science, 16, 671–682.10.1110/ps.062504907
  • Österlund, M., Owenius, R., Carlsson, K., Carlsson, U., Persson, E., Lindgren, M., … Svensson, M. (2001). Probing inhibitor-induced conformational changes along the interface between tissue factor and factor VIIa. Biochemistry, 40, 9324–9328.10.1021/bi010283n
  • Persson, E., & Olsen, O. H. (2011). Allosteric activation of coagulation factor VIIa. Frontiers in Bioscience, 16, 3156–3163.10.2741/3903
  • Persson, E., & Petersen, L. C. (1995). Structurally and functionally distinct Ca2+ binding sites in the gamma-carboxyglutamic acid-containing domain of factor VIIa. European Journal of Biochemistry, 234, 293–300.10.1111/ejb.1995.234.issue-1
  • Phillips, J. C., Braun, R., Wang, W., Gumbart, J., Tajkhorshid, E., Villa, E., … Schulten, K. (2005). Scalable molecular dynamics with NAMD. Journal of Computational Chemistry, 26, 1781–1802.10.1002/(ISSN)1096-987X
  • Pike, A. C., Brzozowski, A. M., Roberts, S. M., Olsen, O. H., & Persson, E. (1999). Structure of human factor VIIa and its implications for the triggering of blood coagulation. Proceedings of the National Academy of Sciences, 96, 8925–8930.10.1073/pnas.96.16.8925
  • Rand, K. D., Jorgensen, T. J. D., Olsen, O. H., Persson, E., Jensen, O. N., Stennicke, H. R., & Andersen, M. D. (2006). Allosteric activation of coagulation factor VIIa visualized by hydrogen exchange. Journal of Biological Chemistry, 281, 23018–23024.10.1074/jbc.M602968200
  • Roy, S., Paborsky, L. R., & Vehar, G. A. (1991). Self-association of tissue factor as revealed by chemical crosslinking. The Journal of Biological Chemistry, 266, 4665–4668.
  • Sabharwal, A. K., Birktoft, J. J., Gorka, J., Wildgoose, P., Petersen, L. C., & Bajaj, S. P. (1995). High affinity Ca2+-binding site in the serine protease domain of human factor VIIa and its role in tissue factor binding and development of catalytic activity. Journal of Biological Chemistry, 270, 15523–15530.10.1074/jbc.270.26.15523
  • Sen, M., Herzik, M., Craft, J. W., Creath, A. L., Agrawal, S., Ruf, W., & Legge, G. B. (2009). Spectroscopic characterization of successive phosphorylation of the tissue factor cytoplasmic region. The Open Spectroscopy Journal, 3, 58–64.10.2174/1874383800903010058
  • Sen, P., Neuenschwander, P. F., Pendurthi, U. R., & Rao, L. V. M. (2010). Analysis of factor VIIa binding to relipidated tissue factor by surface plasmon resonance. Blood Coagulation & Fibrinolysis, 21, 376–379.10.1097/MBC.0b013e328333b084
  • Shaw, A. W., Pureza, V. S., Sligar, S. G., & Morrissey, J. H. (2007). The local phospholipid environment modulates the activation of blood clotting. The Journal of Biological Chemistry, 282, 6556–6563.
  • Sichler, K., Banner, D. W., D’Arcy, A., Hopfner, K.-P., Huber, R., Bode, W., & Brandstetter, H. (2002). Crystal structures of uninhibited factor VIIa link its cofactor and substrate-assisted activation to specific interactions. Journal of Molecular Biology, 322, 591–603.10.1016/S0022-2836(02)00747-7
  • Sorensen, B. B., Persson, E., Freskgârd, P. O., Kjalke, M., Ezban, M., Williams, T., & Rao, L. V. (1997). Incorporation of an active site inhibitor in factor VIIa alters the affinity for tissue factor. Journal of Biological Chemistry, 272, 11863–11868.10.1074/jbc.272.18.11863
  • Vadivel, K., & Bajaj, S. P. (2012). Structural biology of factor VIIa/tissue factor initiated coagulation. Frontiers in Bioscience, 17, 2476–2494.10.2741/4066
  • Zwaal, R. F., Comfurius, P., & Bevers, E. M. (1998). Lipid-protein interactions in blood coagulation. Biochimica et Biophysica Acta (BBA) - Reviews on Biomembranes, 1376, 433–453.10.1016/S0304-4157(98)00018-5

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