64
Views
0
CrossRef citations to date
0
Altmetric
Research Articles

Unusual stability exhibited by (AT)XN12(AT)Y motif associated with high fetal hemoglobin levels

, , &
Pages 3848-3857 | Received 27 May 2018, Accepted 25 Sep 2018, Published online: 11 Jan 2019

References

  • Adelvand, P., Hamid, M., & Sardari, S. (2018). The intrinsic genetic and epigenetic regulator factors as therapeutic targets, and the effect on fetal globin gene expression. Expert Review of Hematology, 11(1), 71–81.
  • Akinsheye, I., Alsultan, A., Solovieff, N., Ngo, D., Baldwin, C. T., Sebastiani, P., … Steinberg, M. H. (2011). Fetal hemoglobin in sickle cell anemia. Blood, 118(1), 19–27.
  • Amato, A., Cappabianca, M. P., Perri, M., Zaghis, I., Grisanti, P., Ponzini, D., & Di Biagio, P. (2014). Interpreting elevated fetal hemoglobin in pathology and health at the basic laboratory level: new and known γ‐gene mutations associated with hereditary persistence of fetal hemoglobin. International Journal of Laboratory Hematology, 36(1), 13–19.
  • Ben Mustapha, M., Moumni, I., Zorai, A., Douzi, K., Ghanem, A., & Abbes, S. (2012). Microsatellite and single nucleotide polymorphisms in the β-globin locus control region-hypersensitive Site 2: SPECIFICITY of Tunisian βs chromosomes. Hemoglobin, 36(6), 533–544.
  • Berova, N., Nakanishi, K., & Woody, R. (Eds.). (2000). Circular dichroism: principles and applications. Hoboken, NJ: John Wiley & Sons.
  • Brázda, V., Laister, R. C., Jagelská, E. B., & Arrowsmith, C. (2011). Cruciform structures are a common DNA feature important for regulating biological processes. BMC Molecular Biology, 12(1), 33.
  • Cantor, C. R., Warshaw, M. M., & Shapiro, H. (1970). Oligonucleotide interactions. III. Circular dichroism studies of the conformation of deoxyoligonucleotides. Biopolymers, 9(9), 1059–1077.
  • Hilbers, C. W., Heus, H. A., V., Dongen, M. J. P., & Wijmenga, S. S. (1994). The hairpin elements of nucleic acid structure: DNA and RNA folding. In Nucleic Acids and Molecular Biology (pp. 56–104). Berlin, Heidelberg: Springer.
  • Ho, P. J., & Thein, S. L. (2000). Gene regulation and deregulation: A beta globin perspective. Blood Reviews, 14(2), 78–93.
  • Kaushik, M., Kukreti, R., Grover, D., Brahmachari, S. K., & Kukreti, S. (2003). Hairpin–duplex equilibrium reflected in the A→ B transition in an undecamer quasi‐palindrome present in the locus control region of the human β‐globin gene cluster. Nucleic Acids Research, 31(23), 6904–6915.
  • Kaushik, M., & Kukreti, S. (2006). Structural polymorphism exhibited by a quasipalindrome present in the locus control region (LCR) of the human β-globin gene cluster. Nucleic Acids Research, 34(12), 3511–3522.
  • Kaushik, M., & Kukreti, S. (2015). Differential structural status of the RNA counterpart of an undecamer quasi-palindromic DNA sequence present in LCR of human β-globin gene cluster. Journal of Biomolecular Structure & Dynamics, 33(2), 244–252.
  • Kaushik, M., Kaushik, S., Roy, K., Singh, A., Mahendru, S., Kumar, M., … Kukreti, S. (2016). A bouquet of DNA structures: Emerging diversity. Biochemistry and Biophysics Reports, 5, 388–395.
  • Kukreti, S., Kaur, H., Kaushik, M., Bansal, A., Saxena, S., Kaushik, S., & Kukreti, R. (2010). Structural polymorphism at LCR and its role in beta-globin gene regulation. Biochimie, 92(9), 1199–1206.
  • Lai, K., Jia, S., Yu, S., Luo, J., & He, Y. (2017). Genome-wide analysis of aberrantly expressed lncRNAs and miRNAs with associated co-expression and ceRNA networks in β-thalassemia and hereditary persistence of fetal hemoglobin. Oncotarget, 8(30), 49931.
  • Li, Q., Peterson, K. R., Fang, X., & Stamatoyannopoulos, G. (2002). Locus control regions. Blood, 100(9), 3077–3086.
  • Lilley, D. M. (1980). The inverted repeat as a recognizable structural feature in supercoiled DNA molecules. Proceedings of the National Academy of Sciences of the United States of America, 77(11), 6468–6472.
  • Lu, X. J., Shakked, Z., & Olson, W. K. (2000). A-form conformational motifs in ligand-bound DNA structures. Journal of Molecular Biology, 300(4), 819–840.
  • Marky, L. A., Blumenfeld, K. S., Kozlowski, S., & Breslauer, K. J. (1983). Salt‐dependent conformational transitions in the self‐complementary deoxydodecanucleotide d (CGCAATTCGCG): Evidence for hairpin formation. Biopolymers, 22(4), 1247–1257.
  • Moumni, I., Ben Mustapha, M., Ben Mansour, I., Zoraï, A., Douzi, K., Sassi, S., … Abbes, S. (2016). Fetal hemoglobin in Tunisian sickle cell disease patient: Relationship with polymorphic sequences cis to the β-globin gene. Indian Journal of Hematology and Blood Transfusion, 32(1), 114–119.
  • Ngo, D. A., Aygun, B., Akinsheye, I., Hankins, J. S., Bhan, I., Luo, H. Y., … Chui, D. H. K. (2012). Fetal haemoglobin levels and haematological characteristics of compound heterozygotes for haemoglobin S and deletional hereditary persistence of fetal haemoglobin. British Journal of Haematology, 156(2), 259–264.
  • Panayotatos, N., & Wells, R. D. (1981). Cruciform structures in supercoiled DNA. Nature, 289(5797), 466
  • Powars, D. R., Schroeder, W. A., Weiss, J. N., & Chan, L. S. (1981). The influence of fetal hemoglobin on the risk of complications of sickle cell anemia. In The Molecular Basis of Mutant Hemoglobin Dysfunction (pp. 17–28)
  • Roy, K. B., Kukreti, S., Bose, H. S., Chauhan, V. S., & Rajeswari, M. R. (1992). Hairpin and duplex forms of a self-complementary dodecamer, d-AGATCTAGATCT, and interaction of the duplex form with the peptide KGWGK: can a pentapeptide destabilize DNA? Biochemistry, 31(27), 6241–6245.
  • Roy, K. B., Kukreti, S., Chauhan, V. S., & Rajeswari, M. R. (1994). Hairpin formation in d-AAGCTTAAGCTT under high salt conditions shows unusual properties. Journal of Biomolecular Structure and Dynamics, 11(5), 1041–1048.
  • Samakoglu, S., Philipsen, S., Grosveld, F., Lüleci, G., & Bagci, H. (1999). Nucleotide changes in the γ-globin promoter and the (AT) x N y (AT) z polymorphic sequence of βLCRHS-2 region associated with altered levels of HbF. European Journal of Human Genetics, 7(3), 345.
  • Spencer, M., Gotberg, J., & Shyu, C. R. (2017). Quasi-palindrome effects on DNA sequence evolution. In 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) (pp. 2312–2314). Piscataway, NJ: IEEE.
  • Tangpan, L., & Tatu, T. (2015). Closed relationship of βE-allele and high HbF associated cis-loci: Case studies in Thai HbE/β-thalassemia families. Journal of Associated Medical Sciences, 48(2), 88.
  • Tatu, T., & Thein, S. L. (2001). Automated genotyping for accurate assignment of the (AT)xNz(AT)y motif within the β‐globin locus control region‐hypersensitive site 2. British Journal of Haematology, 112(2), 488–492.
  • Timsit, Y. (1999). DNA structure and polymerase fidelity. Journal of Molecular Biology, 293(4), 835–853.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.