Advanced search
Publication Cover
Journal of Biomolecular Structure and Dynamics Volume 37, 2019 - Issue 16
Journal homepage
192
Views
2
CrossRef citations to date
0
Altmetric
Letter to the Editor

Computational design, structure refinement and molecular dynamics simulation of novel engineered serratiopeptidase analogs

Maryam RouhaniNano-Biotechnology Department, New Technologies Research Group, Pasteur Institute of Iran, Tehran, IranView further author information
,
Vahideh ValizadehNano-Biotechnology Department, New Technologies Research Group, Pasteur Institute of Iran, Tehran, IranCorrespondence[email protected]
View further author information
,
Reza Ahangari CohanNano-Biotechnology Department, New Technologies Research Group, Pasteur Institute of Iran, Tehran, IranView further author information
&
Dariush NorouzianNano-Biotechnology Department, New Technologies Research Group, Pasteur Institute of Iran, Tehran, IranCorrespondence[email protected]
View further author information
Pages 4171-4180 | Received 30 Aug 2018, Accepted 22 Oct 2018, Published online: 18 Nov 2018

References

  • Ahmed, A. U. (2011). An overview of inflammation: Mechanism and consequences. Frontiers of Biology in China, 6(4), 274–281. doi: 10.1007/s11515-011-1123-9.
  • Baumann, U. (1994). Crystal structure of the 50 kDa metallo protease from Serratia marcescens. Journal of Molecular Biology, 242(3), 244–251. doi: 10.1006/jmbi.1994.1576.
  • Baumann, U., Bauer, M., Létoffé, S., Delepelaire, P., & Wandersman, C. (1995). Crystal structure of a complex between Serratia marcescens metallo-protease and an inhibitor from Erwinia chrysanthemi. Journal of Molecular Biology, 248(3), 653–661.
  • Frishman, D., & Argos, P. (1995). Knowledge‐based protein secondary structure assignment. Proteins: Structure, Function, and Genetics, 23(4), 566–579.
  • Gans, J. D., & Shalloway, D. (2001). Qmol: A program for molecular visualization on Windows-based PCs. Journal of Molecular Graphics & Modelling, 19(6), 557–609. doi: 10.1016/S1093-3263(01)00090-0.
  • Guex, N., & Peitsch, M. C. (1997). SWISS‐MODEL and the Swiss‐Pdb Viewer: An environment for comparative protein modeling. Electrophoresis, 18(15), 2714–2723. doi: 10.1002/elps.1150181505.
  • Hamada, K., Hata, Y., Katsuya, Y., Hiramatsu, H., Fujiwara, T., & Katsube, Y. (1996). Crystal structure of Serratia protease, a zinc-dependent proteinase from Serratia sp. E-15, containing a beta-sheet coil motif at 2.0 A resolution. Journal of Biochemistry, 119(5), 844–851.
  • Humphrey, W., Dalke, A., & Schulten, K. (1996). VMD: Visual molecular dynamics. Journal of Molecular Graphics, 14(1), 33–38. Retrieved from doi: 10.1016/0263-7855(96)00018-5.
  • Linhartová, I., Bumba, L., Mašín, J., Basler, M., Osička, R., Kamanová, J., … Šebo, P. (2010). RTX proteins: A highly diverse family secreted by a common mechanism. FEMS Microbiology Reviews, 34(6), 1076–1112. doi: 10.1111/j.1574-6976.2010.00231.x
  • Rudin, A., & Choi, P. (2013). Chapter 3: Practical aspects of molecular weight measurements. In A. Rudin & P. Choi (Eds.), The elements of polymer science & engineering (3rd ed.) (pp. 89–148). Boston: Academic Press.
  • Selan, L., Papa, R., Tilotta, M., Vrenna, G., Carpentieri, A., Amoresano, A., … Artini, M. (2015). Serratiopeptidase: a well-known metalloprotease with a new non-proteolytic activity against S. aureus biofilm. BMC Microbiology, 15, 207. doi: 10.1186/s12866-015-0548-8.
  • van Gunsteren, W., Billeter, S. R., Eising, A. A., Hünenberger, P., Krüger, P., Mark, A., … Tironi, I. (1996). Biomolecular Simulation: The {GROMOS96} manual and user guide. (pp. 1–1042).Zürich: VDF Hochschulverlag AG an der ETH Zürich.
  • Wu, D., Ran, T., Wang, W., & Xu, D. (2016). Structure of a thermostable serralysin from Serratia sp. FS14 at 1.1 Åresolution. Acta Crystallographica Section F Structural Biology Communications, 72(1), 10–15. doi: 10.1107/s2053230x15023092.
  • Zhang, L., Conway, J. F., & Thibodeau, P. H. (2012). Calcium-induced folding and stabilization of the Pseudomonas aeruginosa alkaline protease. Journal of Biological Chemistry, 287(6), 4311–4322. doi: 10.1074/jbc.M111.310300
  • Zhang, L., Morrison, A. J., & Thibodeau, P. H. (2015). Interdomain contacts and the stability of serralysin protease from Serratia marcescens. PLoS One, 10(9), e0138419. doi: 10.1371/journal.pone.0138419.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Order Reprints Request Corporate Permissions

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

Request Academic Permissions

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.