264
Views
5
CrossRef citations to date
0
Altmetric
Research Articles

Characterization of medicinal plant-associated biocontrol Bacillus subtilis (SSL2) by liquid chromatography-mass spectrometry and evaluation of compounds by in silico and in vitro methods

&
Pages 500-510 | Received 16 Dec 2018, Accepted 06 Feb 2019, Published online: 26 Mar 2019

References

  • Akashi, K., Miyake, C., & Yokota, A. (2001). Citrulline, a novel compatible solute in drought-tolerant wild watermelon leaves, is an efficient hydroxyl radical scavenger. FEBS Letters, 508(3), 438–442. doi:10.1016/S0014-5793(01)03123-4
  • Ali, G., Ashraf, S., El-Sayed, A., Patel, J. S., Green, K. B., Ali, M., … Norman, D. (2016). Ex vivo application of secreted metabolites produced by soil-inhabiting Bacillus spp. efficiently controls foliar diseases caused by Alternaria spp. Applied and Environmental Microbiology, 82(2), 478–490. doi:10.1128/AEM.02662-15
  • Amir, A., Khyati, R., Arvind, A., Neelesh, K., Hirdesh, K., & Siddiqui, M. A. (2014). Mycobacterium tuberculosis H37Rv: In silico drug targets identification by metabolic pathways analysis. International Journal of Evolutionary Biology, 2014, 1. Article ID 284170. doi:10.1155/2014/284170
  • Brumbley, S. M., Carney, B. F., & Denny, T. P. (1993). Phenotype conversion in Pseudomonas solanacearum due to spontaneous inactivation of phcA, a putative LysR transcriptional regulator. Journal of Bacteriology, 175(17), 5477–5487. doi:10.1128/jb.175.17.5477-5487.1993
  • Gupta, M., Prasad, Y., Sharma, S. K., & Jain, C. K. (2017). Identification of phosphoribosyl-AMP cyclohydrolase, as drug target and its inhibitors in Brucella melitensis bv. 1 16M using metabolic pathway analysis. Journal of Biomolecular Structure and Dynamics, 35(2), 287–299. doi:10.1080/07391102.2015.1137229
  • Hoi, J. W. S., & Dumas, B. (2010). ste12 and ste12-like proteins, fungal transcription factors regulating development and pathogenicity. Eukaryotic Cell, 9, 480–485.
  • Hu, H. Q., Li, X. S., & He, H. (2010). Characterization of an antimicrobial material from a newly isolated Bacillus amyloliquefaciens from mangrove for biocontrol of capsicum bacterial wilt. Biological Control, 54(3), 359–365.
  • Ibrahim, D., Nazari, T. F., Kassim, J., & Lim, S. H. (2014). Prodigiosin - An antibacterial red pigment produced by Serratia marcescens IBRL USM 84 associated with a marine sponge Xestospongia testudinaria. Journal of Applied Pharmaceutical Science, 4, 001–006.
  • Jasim, B., Anisha, C., Rohini, S., Kurian, J. M., Jyothis, M., & Radhakrishnan, E. K. (2014). Phenazine carboxylic acid production and rhizome protective effect of endophytic Pseudomonas aeruginosa isolated from Zingiber officinale. World Journal of Microbiology Biotechnology, 30(5), 1649–1654.
  • Kaki, A. A., Chaouche, N. K., Dehimat, L., Milet, A., Youcef-Ali, M., Ongena, M., & Thonart, P. (2013). Biocontrol and plant growth promotion characterization of Bacillus species isolated from Calendula officinal is rhizosphere. Indian Journal of Microbiology, 53, 447–452.
  • Kheirandish, Z., & Harighi, B. (2015). Evaluation of bacterial antagonists of Ralstonia solanacearum, causal agent of bacterial wilt of potato. Biological Control, 86, 14–19. doi:10.1016/j.biocontrol.2015.03.007
  • Köberl, M., Schmidt, R., Ramadan, E. M., Bauer, R., & Berg, G. (2013). The microbiome of medicinal plants: Diversity and importance for plant growth, quality and health. Frontiers in Microbiology, 4, 400.
  • Kraus, P. R., & Heitman, J. (2003). Coping with stress: Calmodulin and calcineurin in model and pathogenic fungi. Biochemical and Biophysical Research Communications, 311(4), 1151–1157.
  • Letunic, I., Doerks, T., & Bork, P. (2012). SMART 7: Recent updates to the protein domain annotation resource. Nucleic Acids Research, 40, 302–305.
  • Lindow, S. E. (1991). Determinants of epiphytic fitness in bacteria. In Microbial ecology of leaves (pp. 295–314). New York, NY: Springer..
  • Liu, H., Zhang, S., Schell, M. A., & Denny, T. P. (2005). Pyramiding unmarked deletions in Ralstonia solanacearum shows that secreted proteins in addition to plant cell-wall-degrading enzymes contribute to virulence. Molecular Plant-Microbe Interactions, 18(12), 1296–1305.
  • Magoulas, G. E., Kostopoulou, O. N., Garnelis, T., Athanassopoulos, C. M., Kournoutou, G. G., & Leotsinidis, M. (2015). Synthesis and antimicrobial activity of chloramphenicol–polyamine conjugates. Bioorganic & Medicinal Chemistry, 23, 3163–3174. doi:10.1016/j.bmc.2015.04.069
  • Meng, F. (2013). Ralstonia solanacearum species complex and bacterial wilt disease. Journal of Bacteriology and Parasitology, 4, 119.
  • Mohan, G., Kumar, A., Thangappanpillai, T., & Ramasamy, B. (2016). Antimicrobial activities of secondary metabolites and phylogenetic study of sponge endosymbiotic bacteria, Bacillus sp. at Agatti Island, Lakshadweep Archipelago. Biotechnology Reports, 11, 44–52. doi:10.1016/j.btre.2016.06.001
  • Raza, W., Ling, N., Yang, L., Huang, Q., & Shen, Q. (2016). Response of tomato wilt pathogen Ralstonia solanacearum to the volatile organic compounds produced by a biocontrol strain Bacillus amyloliquefaciens SQR-9. Scientific Reports, 6, 24856.
  • Rispail, N., Soanes, D. M., Ant, C., Czajkowski, R., Grünler, A., Huguet, R., … Di Pietro, A. (2009). Comparative genomics of MAP kinase and calcium–calcineurin signaling components in plant and human pathogenic fungi. Fungal Genetics and Biology, 46(4), 287–298. doi:10.1016/j.fgb.2009.01.002
  • Schell, M. A. (2000). Control of virulence and pathogenicity genes of Ralstonia solanacearum by an elaborate sensory network. Annual Review of Phytopathology, 38(1), 263–292. doi:10.1146/annurev.phyto.38.1.263
  • Selvaraj, C., Sivakamavalli, J., Vaseeharan, B., Singh, P., & Singh, S. K. (2014). Examine the characterization of biofilm formation and inhibition by targeting SrtA mechanism in Bacillus subtilis: A combined experimental and theoretical study. Journal of Molecular Modeling, 20, 2364.
  • Sherman, W., Day, T., Jacobson, M. P., Friesner, R. A., & Farid, R. (2006). Novel procedure for modeling ligand/receptor induced fit effects. Journal of Medicinal Chemistry, 49(2), 534–553. doi:10.1021/jm050540c
  • Singh, G., & Singh, V. (2018). Functional elucidation of hypothetical proteins for their indispensable roles toward drug designing targets from Helicobacter pylori strain HPAG1. Journal of Biomolecular Structure and Dynamics, 36(4), 906–918. doi:10.1080/07391102.2017.1302361
  • Silva, L., Carrion, L. L., von Groll, A., Costa, S. S., Junqueira, E., Ramos, D. F., … Almeida da Silva, P. E. (2017). In vitro and in silico analysis of the efficiency of tetrahydropyridines as drug efflux inhibitors in Escherichia coli. International Journal of Antimicrobial Agents, 49(3), 308–314. doi:10.1016/j.ijantimicag.2016.11.024
  • Szilagyi, A., & Zhang, Y. (2014). Template-based structure modeling of protein–protein interactions. Current Opinion in Structural Biology, 24, 10–23. doi:10.1016/j.sbi.2013.11.005
  • Tiwari, S., Jamal, S. B., Hassan, S. S., Carvalho, P. V., Almeida, S., Barh, D., … Azevedo, V. (2017). Two-component signal transduction systems of pathogenic bacteria as targets for antimicrobial therapy: An overview. Frontiers in Microbiology, 8, 1878.
  • Vaghasiya, Y., Dave, R., & Chanda, S. (2011). Phytochemical analysis of some medicinal plants from western region of India. Research Journal of Medicinal Plant, 5(5), 567–576. doi:10.3923/rjmp.2011.567.576
  • Vora, J., Patel, S., Sinha, S., Sharma, S., Srivastava, A., Chhabria, M., & Shrivastava, N. (2018). Molecular docking, QSAR and ADMET based mining of natural compounds against prime targets of HIV. Journal of Biomolecular Structure and Dynamics, 37, 131–146. doi:10.1080/07391102.2018.1509732
  • Wiederstein, M., & Sippl, M. J. (2007). ProSA-web: Interactive web service for the recognition of errors in three-dimensional structures of proteins. Nucleic Acids Research, 35, 407–410.
  • Wulff, E. G., Mguni, C. M., Mansfeld-Giese, K., Fels, J., Lubeck, M., & Hockenhull, J. (2002). Biochemical and molecular characterization of Bacillus amyloliquefaciens, B. subtilis and B. pumilus isolates with distinct antagonistic potential against Xanthomonas campestris pv. campestris. Plant Pathology, 51(5), 574–584. doi:10.1046/j.1365-3059.2002.00753.x
  • Yoshimochi, T., Hikichi, Y., Kiba, A., & Ohnishi, K. (2009). The global virulence regulator phcA negatively controls the Ralstonia solanacearum hrp regulatory cascade by repressing expression of the PrhIR signaling proteins. Journal of Bacteriology, 191(10), 3424–3428.
  • Yuan, J., Raza, W., Shen, Q., & Huang, Q. (2012). Antifungal activity of Bacillus amyloliquefaciens NJN-6 volatile compounds against Fusarium oxysporum f. sp. cubense. Applied and Environmental Microbiology, 78(16), 5942–5944. doi:10.1128/AEM.01357-12
  • Zhao, X., Mehrabi, R., & Xu, J. R. (2007). Mitogen-activated protein kinase pathways and fungal pathogenesis. Eukaryotic Cell, 6(10), 1701–1714. doi:10.1128/EC.00216-07

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.