The structural features of poly(dG-dC).poly(dG-dC) at complexation with some porphyrins

References

• Arba, M., Kartasasmita, R. E., & Tjahjono, D. H. (2016). Molecular docking and dynamics simulations on the interaction of cationic porphyrin-anthraquinone hybrids with DNA G-quadruplexes. Journal of Biomolecular Structure & Dynamics, 34 (2), 427–438. https://doi.org/10.1080/07391102.2015.1033015
   PubMed Web of Science ®Google Scholar
• Banville, D. L., Marzilli, L. G., Strickland, J. A., & Wilson, W. D. (1986). Comparison of the effects of cationic porphyrins on DNA properties: Influence of GC content of native and synthetic polymers. Biopolymers, 25(10), 1837–1858. https://doi.org/10.1002/bip.360251003
   PubMed Web of Science ®Google Scholar
• Barkhudaryan, V. G., Ananyan, G. V., Dalyan, Y. B., & Haroutiunian, S. G. (2014). Development of viscometric methods for studying the interaction of various porphyrins with DNA. Part I: Meso-tetra-(4N-hydroxyethylpyridyl) porphyrin. Journal of Porphyrins and Phthalocyanines, 18(07), 594–599. https://doi.org/10.1142/S1088424614500357
   Google Scholar
• Carvlin, M. J., & Fiel, R. J. (1983). Intercalative and nonintercalative binding of large cationic porphyrin ligands to calf thymus DNA. Nucleic Acids Research, 11(17), 6121–6139. https://doi.org/10.1093/nar/11.17.6121
   PubMed Web of Science ®Google Scholar
• Chirvony, V. S., Galievsky, V. A., Kruk, N. N., Dzhagarov, B. M., & Turpin, P. Y. (1997). Photophysics of cationic 5,10,15,20-tetrakis-(4-N-methylpyridyl) porphyrin bound to DNA, [poly(dA-dT)]2 and [poly(dG-dC)]2: On a possible charge transfer process between guanine and porphyrin in its excited singlet state. Journal of Photochemistry and Photobiology B: Biology, 40(2), 154–162. https://doi.org/10.1016/S1011-1344(97)00043-2
   Web of Science ®Google Scholar
• Correia, J. J., & Chaires, J. B. (1994). A Monte Carlo approach. Methods in Enzymology, 240, 593–614. https://doi.org/10.1016/s0076-6879(94)40065-2
   PubMed Web of Science ®Google Scholar
• D’Urso, A., Fragalà, M. E., & Purrello, R. (2013). Applications of porphyrinoids. Topics in heterocyclic chemistry (R. Paolesse, Ed., pp. 34). Springer.
   Google Scholar
• Dalyan, Y. B., Haroutiunian, S. G., Ananyan, G. V., Vardanyan, V. I., Lando, D. Y., Madakyan, V. N., Kazaryan, R. K., Messory, L., Orioli, P., & Benight, A. S. (2001). Interactions of Meso-tetra-(4-N-oxyethylpyridyl) Porphyrin, Its 3-N Analog and Their Metallocomplexes with Duplex DNA. Journal of Biomolecular Structure & Dynamics, 18(5), 677–687. https://doi.org/10.1080/07391102.2001.10506698
   PubMed Web of Science ®Google Scholar
• Dixon, D. W., Marzilli, L. G., & Schinazi, R. F. (1990). Porphyrins as agents against the human immunodeficiency virus. Annals of the New York Academy of Sciences, 616(1 AIDS), 511–513. https://doi.org/10.1111/j.1749-6632.1990.tb17878.x
   Google Scholar
• Fiel, R. J. (1989). Porphyrin-nucleic acid interactions: a review. Journal of Biomolecular Structure & Dynamics, 6(6), 1259–1274. https://doi.org/10.1080/07391102.1989.10506549
   PubMed Web of Science ®Google Scholar
• Fiel, R. J., Jenkins, B. G., & Alderfer, J. L. (1990). Cationic porphyrin-DNA complexes: Specificity of binding modes. Molecular Basis of Specificity in Nucleic Acid-Drug Interactions, 23, 385–399. https://doi.org/10.1007/978-94-011-3728-7_26
   Google Scholar
• Geacintov, N. E., Ibanez, V., Rougee, M., & Bensasson, R. V. (1987). Orientation and linear dichroism characteristics of porphyrin-DNA complexes. Biochemistry, 26(11), 3087–3092. https://doi.org/10.1021/bi00385a021
   PubMed Web of Science ®Google Scholar
• Gray, T. A., Yue, K. T., & Marzilli, L. G. (1991). Effect of N-alkyl substituents on the DNA binding properties of meso-tetrakis (4-N-alkylpyridinium-4-yl)porphyrins and their nickel derivatives. Journal of Inorganic Biochemistry, 41(3), 205–219. https://doi.org/10.1016/0162-0134(91)80013-8
   PubMed Web of Science ®Google Scholar
• Hunter, C. A., Sanders, J. K. M., & Stone, A. J. (1989). Exciton coupling in porphyrin dimmers. Chemical Physics, 133(3), 395–404. https://doi.org/10.1016/0301-0104(89)80221-6
   Web of Science ®Google Scholar
• Kano, K., Minamizono, H., Kitae, T., & Negi, S. J. (1997). Self-aggregation of cationic porphyrins in water. The Journal of Physical Chemistry A, 101(34), 6118–6124. https://doi.org/10.1021/jp9710446
   Web of Science ®Google Scholar
• Kasha, M., Heldt, J., & Gormin, D. (1995). Triplet state potentials in the competitive excitation mechanisms of intramolecular proton transfer. The Journal of Physical Chemistry, 99(19), 7281–7284. https://doi.org/10.1021/j100019a011
   Web of Science ®Google Scholar
• Kasha, M., Rawls, H. R., & Ashraf El-Bayoumi, M. (1965). The exciton model in molecular spectroscopy. Pure and Applied Chemistry, 11(3-4), 371–392. https://doi.org/10.1351/pac196511030371
   Google Scholar
• Kruglik, S. G., Galievsky, V. A., Chirvony, V. S., Apanasevich, P. A., Ermolenkov, V. V., Orlovich, V. A., Chinsky, L., & Turpin, P. Y. (1995). Dynamics and mechanism of the exciplex formation between Cu(TMpy-P4) and DNA model compounds revealed by time-resolved transient absorption and resonance Raman spectroscopies. The Journal of Physical Chemistry, 99(15), 5732–5741. https://doi.org/10.1021/j100015a066
   Web of Science ®Google Scholar
• Kruglik, S. G., Mojzes, P., Mizutani, Y., Kitagawa, T., & Turpin, P. Y. (2001). Time-resolved resonance raman study of the exciplex formed between excited Cu − porphyrin and DNA. The Journal of Physycal Chemistry. B, 105, 5018–5031. https://doi.org/10.1021/jp004207q
   Web of Science ®Google Scholar
• Kubat, P., Lang, K., Kral, V., & Anzenbacher, J. P. (2002). Preprogramming of porphyrin − nucleic acid assemblies via variation of the Alkyl/Aryl substituents of phosphonium tetratolylporphyrins. The Journal of Physical Chemistry B, 106(26), 6784–6792. https://doi.org/10.1021/jp014405x
   Web of Science ®Google Scholar
• Lipscomb, L. A., Zhou, F. X., Presnell, S. R., Woo, R. J., Peek, M. E., Plaskon, R. R., & Williams, L. D. (1996). Structure of DNA-porphyrin complex. Biochemistry, 35(9), 2818–2823. https://doi.org/10.1021/bi952443z
   PubMed Web of Science ®Google Scholar
• Madakyan, V. N., Kazaryan, R. K., Khachatryan, M. A., Stepanyan, A., S., Kurtikyan, T. S., & Ordyan, M. B. (1986). New derivatives of meso-(tetra-4-pyridyl)porphine and their reactions. Chemistry of Heterocyclic Compounds, 22 (2), 167–171. https://doi.org/10.1007/BF00519937
   Google Scholar
• Marzilli, L. G., Banville, D. L., Zon, G., & Wilson, W. D. (1986). Pronounced proton and phosphorus-31 NMR spectral changes on meso-tetrakis(N-methylpyridinium-4-yl)porphyrin binding to poly[d(G-C)].cntdot.poly[d(G-C)]. Journal of the American Chemical Society, 108(14), 4188–4192. https://doi.org/10.1021/ja00274a056
   Web of Science ®Google Scholar
• McMillin, D. R., & McNett, K. M. (1998). Photoprocesses of copper complexes that bind to DNA. Chemical Reviews, 98(3), 1201–1220. https://doi.org/10.1021/cr9601167
   PubMed Web of Science ®Google Scholar
• Müller, W., & Crothers, D. M. (1968). Studies of the binding of actinomycin and related compounds to DNA. Journal of Molecular Biology, 35(2), 251–290. https://doi.org/10.1016/S0022-2836(68)80024-5
   PubMed Web of Science ®Google Scholar
• Pasternack, R. F. (2003). Circular dichroism and the interactions of water soluble porphyrins with DNA—A minireview. Chirality, 15(4), 329–332. https://doi.org/10.1002/chir.10206
   PubMed Web of Science ®Google Scholar
• Pasternack, R. F., & Gibbs, E. J. (1996). Porphyrin and metalloporphyrin interactions with nucleic acids. Metal Ions in Biological Systems, 33, 367–397. https://doi.org/10.1021/bi00279a016
   PubMedGoogle Scholar
• Pasternack, R. F., Gibbs, E. J., & Villafranca, J. J. (1983). Interactions of porphyrins with nucleic acids. Biochemistry, 22(10), 2406–2414. https://doi.org/10.1021/bi00279a016
   PubMed Web of Science ®Google Scholar
• Sari, M. A., Battioni, J. P., Dupre, D., Mansuy, D., & Le Pecq, J. B. (1990). Interaction of cationic porphyrins with DNA: Importance of the number and position of the charges and minimum structural requirements for intercalation. Biochemistry, 29(17), 4205–4215. https://doi.org/10.1021/bi00469a025
   PubMed Web of Science ®Google Scholar
• Sehlstedt, U., Kim, S. K., Carter, P., Goodisman, J., Vollano, J. F., Norden, B., & Dabrowiak, J. C. (1994). Interaction of cationic porphyrins with DNA. Biochemistry, 33(2), 417–426. https://doi.org/10.1021/bi00168a005.
   PubMed Web of Science ®Google Scholar
• Weigand, R., Rotermund, F., & Penzkofer, A. (1997). Aggregation dependent absorption reduction of indocyanine green. The Journal of Physical Chemistry A, 101(42), 7729–7734. https://doi.org/10.1021/jp9700894
   Web of Science ®Google Scholar
• Yue, K. T., Lin, M., Gray, T. A., & Marzilli, L. G. (1991). Nickel (II) porphyrin binding to anionic biopolymers investigated by resonance Raman and optical spectroscopy. Inorganic Chemistry, 30(16), 3214–3222. https://doi.org/10.1021/ic00016a020
   Web of Science ®Google Scholar