203
Views
0
CrossRef citations to date
0
Altmetric
Research Articles

Site specific interactions of amino acids with (ZnO)12 cluster: Density functional approach

ORCID Icon
Pages 13325-13333 | Received 11 Jul 2021, Accepted 26 Sep 2021, Published online: 06 Oct 2021

References

  • Abcouwer, S. F., & Souba, W. W. (1999). Glutamine and arginine. In M. E. Shils, J. A. Olson, M. Shike, & A. C. Ross (Eds.), Modern nutrition in health and disease (9th ed., pp. 559–569). Williams & Wilkins.
  • Angele, M. K., Nitsch, S. M., Hatz, R. A., Angele, P., Hernandez-Richter, T., Wichmann, M. W., Chaudry, I. H., & Schildberg, F. W. (2002). L-arginine: A unique amino acid for improving depressed wound immune function following hemorrhage. European Surgical Research. Europaische Chirurgische Forschung. Recherches Chirurgicales Europeennes, 34(1–2), 53–60. https://doi.org/10.1159/000048888
  • Bo, R., & Ren-Cheng, T. (2017).Advances in Natural Sciences: Nanoscience and Nanotechnology, 8, 015014.
  • Boanini, E., Torricelli, P., Gazzano, M., Giardino, R., & Bigi, A. (2006). Nanocomposites of hydroxyapatite with aspartic acid and glutamic acid and their interaction with osteoblast-like cells. Biomaterials, 27(25), 4428–4433. https://doi.org/10.1016/j.biomaterials.2006.04.019
  • Che, D., Adams, S., Zhao, B., Qin, G., & Jiang, H. (2019). Effects of dietary L-arginine supplementation from conception to post- weaning in piglets. Current Protein & Peptide Science, 20(7), 736–749. https://doi.org/10.2174/1389203720666190125104959
  • Chen, M., Chien, Y.-W., Yang, H.-T., & Chen, Y. (2019). Marketing strategy, serving size, and nutrition information of popular children’s food packages in Taiwan. Nutrients, 11(1), 174–115. https://doi.org/10.3390/nu11010174
  • Cross, S. E., Innes, B., Roberts, M. S., Tsuzuki, T., Robertson, T. A., & McCormick, P. (2007). Human skin penetration of sunscreen nanoparticles: in-vitro assessment of a novel micronized zinc oxide formulation. Skin Pharmacology and Physiology, 20(3), 148–154. https://doi.org/10.1159/000098701
  • Cushen, M., Kerry, J., Morris, M., Cruz, M. C., & Cummins, E. (2012). Nanotechnologies in the food industry - recent developments, risks and regulation. Trends in Food Science & Technology, 24(1), 30–46. https://doi.org/10.1016/j.tifs.2011.10.006
  • Dagdeviren, C., Hwang, S. W., Su, Y., Kim, S., Cheng, H., Gur, O., Haney, R., Omenetto, F. G., Huang, Y., & Rogers, J. A. (2013). Transient, biocompatible electronics and energy harvesters based on ZnO. Small (Weinheim an der Bergstrasse, Germany), 9(20), 3398–3404. https://doi.org/10.1002/smll.201300146
  • Dhanakoti, S. N., Brosnan, J. T., Herzberg, G. R., & Brosnan, M. E. (1990). Renal arginine synthesis: Studies in vitro and in vivo. The American Journal of Physiology, 259(3 Pt 1), E437–42. https://doi.org/10.1152/ajpendo.1990.259.3.E437
  • Flores, M. Z. S., Freire, V. N., Santos, R. P. D., Farias, G. A., Caetano, E. W. S., Oliveira, M. C. F. D., Fernandez, J. R. L., Scolfaro, L. M. R., Bezerra, M. J. B., Oliveira, T. M., Bezerra, G. A., Cavada, B. S., & Alves, H. W. L. (2008). Optical absorption and electronic band structure first-principles calculations of α -glycine crystals. Physical Review B, 77(11), 115104. https://doi.org/10.1103/PhysRevB.77.115104
  • Guo, Y., Lu, X., Zhang, H.P., Weng, J., Watari, F., Leng, Y. (2011). DFT study of the adsorption of aspartic acid on pure, N-doped, and Cadoped rutile (110) surfaces. The Journal of Physical Chemistry C, 115(38), 18572–18581. https://doi.org/10.1021/jp200598t
  • Hasanzade, Z., & Raissi, H. (2020). Carbon and boron nanotubes as a template material for adsorption of 6-Thioguanine chemotherapeutic: a molecular dynamics and density functional approach. Journal of Biomolecular Structure and Dynamics, 38(3), 697-707. https://doi.org/10.1080/07391102.2019.1585951
  • Hedin, S. G. (1895). Eine Methode, das Lysin zu isoliren, nebst einigen Bemerkungen über das Lysatinin. Zeitschrift Fur Physiologische Chemie, 21, 297–305.
  • Hoda, E., Hamid, R., & Saeed, N. (2017). Synthesis and characterization of novel silver nanoparticles using Chamaemelum nobile extract for antibacterial application. Advances in Natural Sciences: Nanoscience and Nanotechnology, 8, 025004.
  • Hohenberg, P., & Kohn, W. (1964). Inhomogeneous electron gas. Physical Review, 136(3B), B864–B871. https://doi.org/10.1103/PhysRev.136.B864
  • Hsu, C. N., & Tain, Y. L. (2018). The double-edged sword effects of maternal nutrition in the developmental programming of hypertension. Nutrients, 10(12), 1917. https://doi.org/10.3390/nu10121917
  • Joshi, P., Shewale, V., Pandey, R., Shanker, V., Hussain, S., & Karna, S. P. (2011). Site specific interaction between ZnO nanoparticles and tryptophan: A first principles quantum mechanical study. Physical Chemistry Chemical Physics: PCCP, 13(2), 476–479. https://doi.org/10.1039/c0cp01466d
  • Junquera, J., Paz, O., Portal, D. S., & Artacho, E. (2001). Numerical atomic orbitals for linear-scaling calculations. Physical Review B, 64(23), 235111. https://doi.org/10.1103/PhysRevB.64.235111
  • Kaur, H., Sharma, M., Ghosh, R., Mohapatra, S., & Kuanr, B. K. (2020). Magnetic bipolar transistor based on ZnO/NiO/Si heterostructure using pulsed laser deposition. AIP Advances, 10(1), 015119. https://doi.org/10.1063/1.5130046
  • Lee, T., & Lin, Y. K. (2010). The origin of life and the crystallization of aspartic acid in water. Crystal Growth and Design, 10(4), 1652–1660. )https://doi.org/10.1021/cg901219f
  • Luiking, Y. C., Ten Have, G. A. M., Wolfe, R. R., & Deutz, N. E. P. (2012). Arginine de novo and nitric oxide production in disease states. American Journal of Physiology. Endocrinology and Metabolism, 303(10), E1177–E1189. https://doi.org/10.1152/ajpendo.00284.2012
  • Maddahi, P. S., Yeganeh, M., & Baghsiyahi, F. B. (2019). ZnO nanoparticles as a sensitive platform for detection of nitration in tyrosine and tryptophan: A DFT study. Materials Chemistry and Physics, 237, 121857. https://doi.org/10.1016/j.matchemphys.2019.121857
  • Mandal, G., Bhattacharya, S., & Ganguly, T. (2009). Nature of interactions of tryptophan with zinc oxide nanoparticles and l-aspartic acid: A spectroscopic approach. Chemical Physics Letters, 472(1–3), 128–133. https://doi.org/10.1016/j.cplett.2009.03.007
  • McKnight, J. R., Satterfield, M. C., Jobgen, W. S., Smith, S. B., Spencer, T. E., Meininger, C. J., McNeal, C. J., & Wu, G. (2010). Beneficial effects of L-arginine on reducing obesity: Potential mechanisms and important implications for human health. Amino Acids, 39(2), 349–357. https://doi.org/10.1007/s00726-010-0598-z
  • Mohamed, Z. G. (2010). Anti-aging effects of L-arginine. Journal of Advanced Research, 1, 169–177.
  • Moreno, J., & Soler, J. M. (1992). Optimal meshes for integrals in real- and reciprocal-space unit cells. Physical Review. B, Condensed Matter, 45(24), 13891–13898. https://doi.org/10.1103/physrevb.45.13891
  • Morris, S. M. (2006). Arginine: Beyond protein. The American Journal of Clinical Nutrition, 83(2), 508S–512S. https://doi.org/10.1093/ajcn/83.2.508S
  • Oda, M., & Nakayama, T. (2005). Electronic-state control of amino acids on semiconductor surfaces. Applied Surface Science, 244(1–4), 627–630. https://doi.org/10.1016/j.apsusc.2004.10.138
  • Oda, M., & Nakayama, T. (2006). Charge injection from Si substrate into amino acids. Japanese Journal of Applied Physics, 45(11), 8939–8942. https://doi.org/10.1143/JJAP.45.8939
  • Paula, P. E. J., Fátima, F. S. N. D., Dos, R. C. J. S., De, A. N. J., Souza, C. R., & Antonio, A. M. E. (2012). Zinc oxide nanoparticles: Synthesis, antimicrobial activity and food packaging applications. Food and Bioprocess Technology, 5(1447).
  • Perdew, J. P., Burke, K., & Ernzerhof, M. (1996). Generalized gradient approximation made simple. Physical Review Letters, 77(18), 3865–3868. https://doi.org/10.1103/PhysRevLett.77.3865
  • Piana, S., Jones, F., & Gale, J. D. (2007). Aspartic acid as a crystal growth catalyst. CrystEngComm, 9(12), 1187–1191. https://doi.org/10.1039/b708260f
  • Plimmer, R. H. A. (1908). The chemical constitution of the proteins. Longmans, Green and Co.
  • Prabhu, Y. T., Rao, K. V., Kumar, V. S. S., & Kumari, B. S. (2013). Synthesis of ZnO nanoparticles by a novel surfactant assisted amine combustion method. Advances in Nanoparticles, 2(1), 45–50. https://doi.org/10.4236/anp.2013.21009
  • Prashanth, G. K., Prashanth, P. A., Tejabhiram, Y., Nagabhushana, B. M., Ananda, S., & Yogisha, S. (2016). ZnO nanopellets have selective anticancer activity. Materials Science and Engineering C, 62, 919–926.
  • Rasmussen, J. W., Martinez, E., Louka, P., & Wingett, D. G. (2010). Zinc oxide nanoparticles for selective destruction of tumor cells and potential for drug delivery applications. Expert Opinion on Drug Delivery, 7(9), 1063–1077. https://doi.org/10.1517/17425247.2010.502560
  • Rodrigues, K. J., Krause, M., Rocha, I. M. G. D., Umpierre, D., & Fayh, A. P. T. (2018). Association of l-arginine supplementation with markers of endothelial function in patients with cardiovascular or metabolic disorders: A systematic review and meta-analysis. Nutrients, 11(1), 15–15. https://doi.org/10.3390/nu11010015
  • Salgueiro, M. J., Zubillaga, M., Lysionek, A., Caro, R., Weill, R., & Boccio, J. (2002). Fortification strategies to combat zinc and iron deficiency. Nutrition Reviews, 60(2), 52–58. https://doi.org/10.1301/00296640260085958
  • Sarig, S. (2004). Aspartic acid nucleates the apatite crystallites of bone: A hypothesis. Bone, 35(1), 108–113. https://doi.org/10.1016/j.bone.2004.02.020
  • Seifter, E., Rettura, G., Barbul, A., & Levenson, S. M. (1978). Arginine: An essential amino acid for injured rats. Surgery, 84(2), 224–230.
  • Shen, C., Wang, J., Tang, Z., Wang, H., Lian, H., Zhang, J., & Cao, C. (2009). Physicochemical properties of poly(ethylene oxide)-based composite polymer electrolytes with a silane-modified mesoporous silica SBA-15. Electrochimica Acta, 54(12), 3490–3494. https://doi.org/10.1016/j.electacta.2009.01.014
  • Shewale, V., Joshi, P., Mukhopadhyay, S., Deshpande, M., Pandey, R., Hussain, S., & Karna, S. P. (2011). First-principles study of nanoparticle–biomolecular interactions: Anchoring of a (ZnO) 12 cluster on nucleobases. The Journal of Physical Chemistry C, 115(21), 10426–10430. https://doi.org/10.1021/jp2013545
  • Shi, H. P., Efron, D. T., Most, D., Tantry, U. S., & Barbul, A. (2000). Supplemental dietary arginine enhances wound healing in normal but not inducible nitric oxide synthase knockout mice. Surgery, 128(2), 374–378. https://doi.org/10.1067/msy.2000.107372
  • Shukla, M. K., Dubey, M., Zakar, E., & Leszczynski, J. (2009). DFT investigation of the interaction of gold nanoclusters with nucleic acid base guanine and the Watson − Crick guanine-cytosine base pair. The Journal of Physical Chemistry C, 113(10), 3960–3966. https://doi.org/10.1021/jp808622y
  • Silva, A. M., Silva, B. P., Sales, F. A. M., Freire, V. N., Moreira, E., Fulco, U. L., Albuquerque, E. L., Maia, F. F., & Caetano, E. W. S. (2012). Optical absorption and DFT calculations in L -aspartic acid anhydrous crystals: Charge carrier effective masses point to semiconducting behavior. Physical Review B, 86(19), 195201. https://doi.org/10.1103/PhysRevB.86.195201
  • Sirelkhatim, A., Mahmud, S., Seeni, A., Kaus, N. H. M., Ann, L. C., Bakhori, S. K. M., Hasan, H., & Mohamad, D. (2015). Review on zinc oxide nanoparticles: Antibacterial activity and toxicity mechanism. Nano-Micro Letters, 7(3), 219–242. https://doi.org/10.1007/s40820-015-0040-x
  • Soler, J.M., Artacho, E., Gale, J.D., Garcia, A., Junquera, J., Ordejon, P., & Portal, D.S. (2002). The SIESTA method for ab initio order-N materials simulation. Journal of Physics: Condensed Matter, 14, 2745–2779.
  • Thirukumaran, P., Atchudan, R., Parveen, A. S., Kalaiarasan, K., Lee, Y. R., & Kim, S. C. (2019). Fabrication of ZnO nanoparticles adorned nitrogen-doped carbon balls and their application in photodegradation of organic dyes. Scientific Reports, 9(1), 19509. https://doi.org/10.1038/s41598-019-56109-3
  • Troullier, N., & Martins, J. L. (1991). Efficient pseudopotentials for plane-wave calculations. Physical Review. B, Condensed Matter, 43(3), 1993–2006. https://doi.org/10.1103/physrevb.43.1993
  • Vaishnav, J., Subha, V., Kirubanandan, S., Arulmozhi, M., & Renganathan, S. (2017). Green synthesis of zinc oxide nanoparticles by celosia argentea and its characterization. Journal of Optoelectronics and Biomedical Materials, 9, 59–71.
  • Verdugo, V. S., Metiu, H., & Gwinn, E., (2010). The properties of small Ag clusters bound to DNA bases. Journal of Chemical Physics, 132, 195102–1-10.
  • Wang, L., Kang, Y., Liu, X., Zhang, S., Huang, W., & Wang, S. (2012). ZnO nanorod gas sensor for ethanol detection. Sensors and Actuators B: Chemical, 162(1), 237–243. https://doi.org/10.1016/j.snb.2011.12.073
  • Wang, Z. L., & Song, J. H. (2006). Piezoelectric nanogenerators based on zinc oxide nanowire arrays. Science (New York, NY), 312(5771), 242–246. https://doi.org/10.1126/science.1124005
  • Wang, X. D., Song, J. H., Liu, J., & Wang, Z. L. (2007). Direct-current nanogenerator driven by ultrasonic waves. Science (New York, NY), 316(5821), 102–105. https://doi.org/10.1126/science.1139366
  • Wang, X. D., Zhou, J., Song, J. H., Liu, J., Xu, N. S., & Wang, Z. L. (2006). Piezoelectric field effect transistor and nanoforce sensor based on a single ZnO nanowire. Nano Letters, 6(12), 2768–2772. https://doi.org/10.1021/nl061802g
  • Willett, R. L., Baldwin, K. W., West, K. W., & Pfeiffer, L. N. (2005). Differential adhesion of amino acids to inorganic surfaces. Proceedings of the National Academy of Sciences of the United States of America, 102(22), 7817–7822. https://doi.org/10.1073/pnas.0408565102
  • Wu, G., Bazer, F. W., Davis, T. A., Kim, S. W., Li, P., Marc, R. J., Carey, S. M., Smith, S. B., Spencer, T. E., & Yin, Y. (2009). Arginine metabolism and nutrition in growth, health and disease. Amino Acids, 37(1), 153–168. https://doi.org/10.1007/s00726-008-0210-y
  • Wu, G., Bazer, F. W., Satterfield, M. C., Li, X., Wang, X., Johnson, G. A., Burghardt, R. C., Dai, Z., Wang, J., & Wu, Z. (2013). Impacts of arginine nutrition on embryonic and fetal development in mammals. Amino Acids, 45(2), 241–256. https://doi.org/10.1007/s00726-013-1515-z
  • Wu, G., & Morris, S. M. (1998). Arginine metabolism: Nitric oxide and beyond. Biochemical Journal, 336(1), 1–17. https://doi.org/10.1042/bj3360001
  • Zhang, Z., Lai, Y. X., Yu, L., & Ding, J. D. (2010). Effects of immobilizing sites of RGD peptides in amphiphilic block copolymers on efficacy of cell adhesion. Biomaterials, 31(31), 7873–7882. https://doi.org/10.1016/j.biomaterials.2010.07.014
  • Zhang, Z. Y., & Xiong, H. M. (2015). Photoluminescent ZnO nanoparticles and their biological applications. Materials, 8(6), 3101–3127. https://doi.org/10.3390/ma8063101
  • Zhou, J., Xu, N. S., & Wang, Z. L. (2006). Dissolving behavior and stability of ZnO wires in biofluids: A study on biodegradability and biocompatibility of ZnO nanostructures. Advanced Materials, 18(18), 2432–2435. https://doi.org/10.1002/adma.200600200

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.