Evolution of wild barley at “Evolution Canyon”: adaptation, speciation, pre-agricultural collection, and barley improvement

References

• Barash D, Sikorski J, Perry EB, Nevo E, Nudler E. 2006. Adaptive mutations in RNA-based regulatory mechanisms: computational and experimental investigations. Isr J Ecol Evol. 52:263–279.
   Web of Science ®Google Scholar
• Brown AHD, Zohary D, Nevo E. 1978. Outcrossing rates and heterozygosity in natural populations of Hordeum spontaneum Koch in Israel. Heredity. 41:49–62.
   Web of Science ®Google Scholar
• Bures P, Pavliček T, Horova L, Nevo E. 2004. Microgeographic genome size differentiation of the carob tree, Ceratonia siliqua, at “Evolution Canyon,” Israel. Ann Bot. 93:529–535.
   PubMed Web of Science ®Google Scholar
• Chen G, Komatsuda T, Ma JF, Nawrath C, Pourkheirandish M, Tagiri A, Hu Y-G, Sameri M, Li S, Zhao S, et al. 2011. An ATP-binding cassette subfamily G-full transporter is essential for the retention of leaf water in both wild barley and rice. Proc Natl Acad Sci USA. 108:12354–12359.
   PubMed Web of Science ®Google Scholar
• Close TJ, Choi DW, Venegas M, Salvi S, Tuberosa R, Ryabushkina N, Turuspekov Y, Nevo E. 2000. Allelic variation in wild and cultivated barley at the Dhn4 locus, which encodes a major drought-induced and seed protein, DHN4. 8th International Barley Genetics Symposium 22–27 Oct 2000, Adelaide, South Australia.
   Google Scholar
• Cronin JK, Bundock PC, Henry RJ, Nevo E. 2007. Adaptive climatic molecular evolution in wild barley at the lsa defense locus. Proc Natl Acad Sci USA. 104:2773–2778.
   PubMed Web of Science ®Google Scholar
• Dai F, Nevo E, Wu D, Comadran J, Zhou M, Qiu L, Chen A, Beiles A, Chen G, Zhang G. 2012. Tibet is one of the centers of domestication of cultivated barley. Proc Natl Acad Sci USA. 109:16969–16973.
   PubMed Web of Science ®Google Scholar
• Dvornyk V, Vinogradova O, Nevo E. 2002. Long-term microclimatic stress causes rapid adaptive radiation of kaiABC clock gene family in a cyanobacterium, Nostoc linckia, from “Evolution Canyons” I and II, Israel. Proc Natl Acad Sci. USA. 99:2082–2087.
   PubMed Web of Science ®Google Scholar
• Feldman M, Kislev ME. 2007. Domestication of emmer wheat and evolution of free-threshing tetraploid wheat. Isr J Plant Sci. 55:207–221.
   Web of Science ®Google Scholar
• Gasmanova N, Lebeda A, Doležalova I, Cohen T, Pavliček T, Fahima T, Nevo E. 2007. Genome size variation of Lotus peregrinus at “Evolution Canyon” I Microsite, Lower Nahal Oren, Mt. Carmel, Israel. Acta Biologica Cracoviensia, Ser. Botanica. 49(1):39–46.
   Web of Science ®Google Scholar
• Grosman L, Ashkenazy H, Belfer-Cohen A. 2005. The Natufian occupation of Nahal Oren, Mount Carmel, Israel – the lithic evidence. Palaéorient. 31(12):5–26.
   Google Scholar
• Gupta PK, Sharma PK, Balyan HS, Roy JK, Sharma S, Beharav A, Nevo E. 2002. Polymorphism at rDNA loci in barley and its relation with climatic variables. Theor Appl Genet. 104:473–481.
   PubMed Web of Science ®Google Scholar
• Hadid Y, Pavlíček T, Beiles A, Raz S, Nevo E. 2014. Sympatric speciation of spiny mice Acomys at “Evolution Canyon,” Israel. Proc Natl Acad Sci USA. 111:1043–1048.
   PubMed Web of Science ®Google Scholar
• Harlan JR. 1976. Barley. In: Simmonds NW, editor. Evolution of crop plants. London: Longman Press; p. 93–98.
   Google Scholar
• Harlan JR, Zohary D. 1966. Distribution of wild wheats and barley. Science. 153:1074–1080. http://faostat.fao.org/faostat.
   PubMed Web of Science ®Google Scholar
• Hübner, S, Rashkovetsky E, Kim YB, Oh JH, Michalak K, Weiner D, Michalak P. 2013. Genome differentiation of Drosophila melanogaster from a microclimate contrast in “Evolution Canyon,” Israel. Proc Natl Acad Sci USA. 110:21059–21064.
   PubMed Web of Science ®Google Scholar
• Kalendar R, Tanskanen J, Immonen S, Nevo E, Schulman AH. 2000. Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence. Proc Natl Acad Sci USA. 97:6603–6607.
   PubMed Web of Science ®Google Scholar
• Kim YB, Oh JH, McIver LJ, Rashkovetsky E, Michalak K, Garner, HR, Kang L, Nevo E, Koroi AB, Michalak P. 2014. Divergence of Drosophila melanogaster repeatomes in response to a sharp microclimate contrast in Evolution Canyon, Israel. Proc Natl Acad Sci USA. 111(29):10630–10635.
   PubMed Web of Science ®Google Scholar
• Kislev ME. 1997. Early agriculture and Palaeoecology of Netiv Hagdud. In: Bar-Yosef O, Gopher A, editors. An early Neolithic village in the Jordan Village. Part I. The archaeology of Netiv Hagdud. Cambridge, MA: Peabody Museum of Archaeology and Ethnology; p. 209–236.
   Google Scholar
• Kislev ME, Nadel D, Carmi I. 1992. Epi\Palaeolithic (19,000 BP cereal and fruit diet at Ohallo II, Sea of Galilee, Israel. Rev Palaeobot Palynol. 73:161–166.
   Web of Science ®Google Scholar
• Korol AB, Rashkovetsky E, Iliadi K, Nevo E. 2006. Drosophila flies in “Evolution Canyon” as a model for incipient sympatric speciation. Proc Natl Acad Sci USA. 103:18184–18189.
   PubMed Web of Science ®Google Scholar
• Kossover O, Frenkel Z, Korol AB, Nevo E. 2009. Genetic diversity and stress of Ricotia lunaria in “Evolution Canyon,” Israel. J Hered. 100:432–440.
   PubMed Web of Science ®Google Scholar
• Krugman T, Satish N, Vinogradova ON, Beharav A, Kashi Y, Nevo E. 2001. Genome diversity in the cyanobacterium Nostoc linckia at “Evolution Canyon” Israel, revealed by inter-HIP1 size polymorphisms. Evol Ecol Res. 3:899–915.
   Web of Science ®Google Scholar
• Lamb BC, Mandaokar S, Bahsoun B, Grishkan I, Nevo E. 2008. Differences in spontaneous mutation frequencies as function of environmental stress in soil fungi at “Evolution Canyon,” Israel. Proc Natl Acad Sci USA. 105:5792–5796.
   PubMed Web of Science ®Google Scholar
• Lev E, Kislev ME, Bar-Yosef O. 2005. Mousterian vegetal food in Kebara cave, Carmel. J Archaeol Sci. 32:457–484.
   Web of Science ®Google Scholar
• Ma X, Sela H, Jiao G, Li C, Wang A, Pourkheirandish M, Weiner D, Sakuma S, Krugman T, Nevo E, Komatsuda T, Korol AB, Chen G. 2012. Population-genetic analysis of HvABCG31 promoter sequence in wild barley Hordeum vulgare ssp. spontaneum). BMC Evol Biol. 12:188.
   PubMed Web of Science ®Google Scholar
• Morell PL, Clegg MT. 2007. Genetic evidence for a second domestication of barley (Hordeum vulgare) east of the Fertile Crescent. Proc Natl Acad Sci USA. 104:3289–3294.
   PubMed Web of Science ®Google Scholar
• Nei M. 1987. Molecular evolutionary genetics. New York: Columbia University Press.
   Google Scholar
• Nevo, E. 1975–2014. Nevo list of “Wild Cereals”, 1975–2014 [Internet]; [updated September 2014]. Available from: http://evolution.haifa.ac.il/index.php/28-people/publications/153-publications-nevo-cereal
   Google Scholar
• Nevo E. 1991–2014. Nevo list of “Evolution Canyons”, 1991–2014 [internet]; [updated September 2014]. Available from: http://evolution.haifa.ac.il/index.php/28-people/publications/154-publications-nevo-evol-canyon
   Google Scholar
• Nevo E. 1992. Origin, evolution, population genetics and resources for breeding of wild barley, Hordeum spontaneum, in the Fertile Crescent. In: Shewry P, editor. Barley: genetics, molecular biology and biotechnology. Wallingford, UK: CAB International; p. 19–43.
   Google Scholar
• Nevo E. 1995. Asian, African and European biota meet at “Evolution Canyon,” Israel: local tests of global biodiversity and genetic diversity patterns. Proc Roy Soc Lond B. 262:149–155.
   Web of Science ®Google Scholar
• Nevo E. 1997. Evolution in action across phylogeny caused by microclimatic stresses at “Evolution Canyon.” Theor Pop Biol. 52:231–243.
   PubMed Web of Science ®Google Scholar
• Nevo E. 1998. Molecular evolution and ecological stress at global, regional and local scales: the Israeli perspective. J Exp Zool. 282:95–119.
   Google Scholar
• Nevo E. 2001. Evolution of genome-phenome diversity under environmental stress. Proc Natl Acad Sci USA. 98:6233–6240.
   PubMed Web of Science ®Google Scholar
• Nevo E. 2006a. Genome evolution of wild cereal diversity and prospects for crop improvement. Plant Genet Resour. 4:36–46.
   Google Scholar
• Nevo E. 2006b. “Evolution Canyon”: a microcosm of life's evolution focusing on adaptation and speciation. Isr J Ecol Evol. 52:485–506.
   Web of Science ®Google Scholar
• Nevo E. 2009. Evolution in action across life at “Evolution Canyon,” Israel. Trends Evol Biol. 1:e3.
   Google Scholar
• Nevo E. 2011. Selection overrules gene flow at “Evolution Canyons,” Israel. In: Urbano KV, editor. Advances in genetics research. Vol. 5. Hauppauge, NY: Nova Science Publishers, Inc.; p. 67–89.
   Google Scholar
• Nevo E. 2012a. Evolution of wild barley and barley improvement. In: Zhang G, et al., editors. Advance in barley sciences. Dordrecht, the Netherlands: Zhejiang University Press and Springer Verlag; p. 1–23.
   Google Scholar
• Nevo E. 2012b. “Evolution Canyon,” a potential microscale monitor of global warming across life. Proc Natl Acad Sci USA. 109:2960–2965.
   PubMed Web of Science ®Google Scholar
• Nevo E, Apelbaum-Elkaher I, Garty J, Beiles A. 1997. Natural selection causes microscale allozyme diversity in wild barley and a lichen at “Evolution Canyon” Mt. Carmel, Israel. Heredity. 78:373–382.
   Web of Science ®Google Scholar
• Nevo E, Beharav A, Meyer RC, Hackett CA, Forster BP, Russell JR, Powell W. 2005. Genomic microsatellite adaptive divergence of wild barley by microclimatic stress in “Evolution Canyon,” Israel. Biol J Linn Soc. 84:205–224.
   Web of Science ®Google Scholar
• Nevo E, Bolshakova MA, Martyn GI, Musatenko LI, Sytnik KM, Pavliček T, Beharav A. 2000. Drought and light anatomical adaptive leaf strategies in three woody species caused by microclimatic selection at “Evolution Canyon,” Israel. Isr J Plant Sci. 48:33–46.
   Web of Science ®Google Scholar
• Nevo E, Fragman O, Dafni A, Beiles A. 1999. Biodiversity and interslope divergence of vascular plants caused by microclimatic differences at “Evolution Canyon,” Lower Nahal Oren, Mount Carmel, Israel. Isr J Plant Sci. 47:49–59.
   Web of Science ®Google Scholar
• Nevo E, Fu Y-B, Pavlicek T, Khalifa S, Tavasi M, Beiles A. 2012. Evolution of wild cereals during 28 years of global warming in Israel. Proc Natl Acad Sci USA. 109:3412–3415.
   PubMed Web of Science ®Google Scholar
• Nevo E, Rashkovetsky E, Pavliček T, Korol AB. 1998. A complex adaptive syndrome in Drosophila caused by microclimatic contrasts. Heredity. 80:9–16.
   PubMed Web of Science ®Google Scholar
• Parnas T. 2006. Evidence for incipient sympatric speciation in wild barley, Hordeum spontaneum, at “Evolution Canyon,” Mt. Carmel, Israel, based on hybridization and physiological and genetic diversity estimates. MSc Thesis, University of Haifa.
   Google Scholar
• Pavlíček T, Bures P, Horová L, Raskina O, Nevo E. 2008. Genome size microscale divergence of Cyclamen persicum in Evolution Canyon, Israel. Cent Eur J Biol. 3:83–90.
   Web of Science ®Google Scholar
• Pavliček T, Sharon D, Kravchenko V, Saaroni H, Nevo E. 2003. Microclimatic interslope differences underlying biodiversity contrasts in “Evolution Canyon,” Mt. Carmel, Israel. Isr J Earth Sci. 52:1–9.
   Google Scholar
• Rashkovetsky E, Iliadi K, Mickalak P, Lupu A, Nevo E, Feder ME, Korol AB. 2006. Adaptive differentiation of thermotolerance in Drosophila along a microclimatic gradient. Heredity. 96:353–359.
   PubMed Web of Science ®Google Scholar
• Raz S, Graham JH, Hel-Or H, Pavliček T, Nevo E. 2011. Developmental instability of vascular plants in contrasting microclimates at “Evolution Canyon.” Biol J Linn Soc. 102:786–797.
   Web of Science ®Google Scholar
• Saleem M, Lamb BC, Nevo E. 2001. Inherited differences in crossing-over and gene conversion frequencies between wild strains of Sordaria fimicola from “Evolution Canyon.” Genetics. 159:1573–1593.
   PubMed Web of Science ®Google Scholar
• Satish N, Krugman T, Vinogradova ON, Nevo E, Kashi Y. 2001. Genome evolution of the cyanobacterium Nostoc linckia under sharp microclimatic divergence at “Evolution Canyon,” Israel. Microbial Ecol. 42:306–316.
   PubMed Web of Science ®Google Scholar
• Sharaf K, Horovă L, Pavliček T, Nevo E, Bureš P. 2010. Genome size and base composition in Oryzaephilius surinamensis (Coleoptera: Sylvanidae) and differences between native (feral) and silo pest populations in Israel. J Stored Products Res. 46:34–37.
   Web of Science ®Google Scholar
• Shen Y, Lansky EP, Nevo E. 2010. Wild barley-harbinger of biodiversity. Biodiversity. 11(3–4):19–25.
   Google Scholar
• Shen Y, Lansky EP, Traber M, Nevo E. 2013. Increases in both acute and chronic temperature potentiate tocotrienol concentrations in wild barley at “Evolution Canyon.” Chem Biodivers. 10:1696–1705.
   PubMed Web of Science ®Google Scholar
• Shen Y, Lebold K, Lansky EP, Traber MG, Nevo E. 2011. “Tocol-omic” diversity in wild barley. Chem Biodivers. 8:2322–2330.
   PubMed Web of Science ®Google Scholar
• Sikorski J, Nevo E. 2005. Adaptation and incipient sympatric speciation of Bacillus simplex under microclimatic contrast at “Evolution Canyons” I and II, Israel. Proc Natl Acad Sci USA. 102:15924–15929.
   PubMed Web of Science ®Google Scholar
• Sikorski J, Nevo E. 2006. On the necessity to study natural bacterial populations-the model of Bacillus simplex from “Evolution Canyon” I and II, Israel. Isr J Ecol Evol. 52:527–542.
   Web of Science ®Google Scholar
• Sikorski J, Nevo E. 2007. Patterns of thermal adaptation of Bacillus simplex to the microclimatically contrasting slopes of “Evolution Canyons” I and II, Israel. Environ. Microbiol. 9:716–726.
   PubMed Web of Science ®Google Scholar
• Singaravelan N, Grishkan I, Beharav A, Wakamatsu K, Ito S, Nevo E. 2008. Adaptive melanin response of the soil fungus Aspergillus niger to UV radiation stress at “Evolution Canyon,” Mount Carmel, Israel. PLoS ONE. 3(8):e2993:1–5.
   Web of Science ®Google Scholar
• Timmusk S, Paalme V, Lagercrantz U, Nevo E. 2009. Detection and quantification of Paenibacillus polymyxa in the rhizosphere of wild barley (Hordeum spontaneum) with real-time PCR. J Appl Microbiol. 107:736–745.
   PubMed Web of Science ®Google Scholar
• Timmusk S, Paalme V, Pavlicek T, Bergquist J, Vangala A, Danilas T, Nevo E. 2011. Bacterial distribution in the rhizosphere of wild barley under contrasting microclimates. PLoS ONE. 6(3):e17968.
   PubMed Web of Science ®Google Scholar
• Wei YM, Baum BR, Nevo E, Zheng Y. 2005. Does domestication mimic speciation? 1. A population-genetic analysis of Hordeum spontaneum and Hordeum vulgare based on AFLP and evolutionary considerations. Can J Bot. 83:1496–1512.
   Google Scholar
• Weiss E, Wetterstorm W, Nadel D, Bar-Yosef O. 2004. The broad spectrum revisited: Evidence from plant remains. Proc Natl Acad Sci USA. 101:9551–9555.
   PubMed Web of Science ®Google Scholar
• Yang Z, Zhang T, Bolshoy A, Beharav A, Nevo E. 2009. Adaptive microclimatic structural and expressional dehydrin 1 evolution in wild barley, Hordeum spontaneum, at “Evolution Canyon,” Mount Carmel, Israel. Mol Ecol. 18:2063–2075.
   PubMed Web of Science ®Google Scholar
• Yang Z, Zhang T, Li G, Nevo E. 2012. Adaptive microclimatic evolution of the dehydrin 6 gene in wild barley at “Evolution Canyon,” Israel. Genetica. 139:1429–1438.
   Web of Science ®Google Scholar
• Zhang T, Li GR, Yang Z, Nevo E. 2014. Adaptive evolution of duplicated hsp 17 genes in wild barley from microclimatically divergent sites of Israel. Genet Mol Res. 13:1220–1232.
   PubMed Web of Science ®Google Scholar
• Zohary D. 1969. The progenitors of wheat and barley in relation to domestication and agricultural dispersal in the Old World. In: Ucko PJ, Dimbleby GW, editors. The domestication and exploitation of plants and animals. London: Duckworth; p. 47–66.
   Google Scholar
• Zohary D, Hopf M, Weiss E. 2012. Domestication of plants in the Old World. 4th ed. Oxford: Oxford University Press.
   Google Scholar