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Research Article

The Host Genotype Affects the Bacterial Community in the Human Gastronintestinal Tract

Pages 129-134 | Published online: 11 Jul 2009

REFERENCES

  • Whitman WB, Coleman DC, Wiebe WJ. Prokaryotes: The unseen majority. Proc Natl Acad Sci USA 1998; 95: 6578–83.
  • Savage DC. Microbial ecology of the gastrointestinal tract. Ann Rev Microbiol 1977; 31: 107–33.
  • Tannock GW. Normal Microflora. An Introduction to Mi-crobes Inhabiting the Human Body. London: Chapman and Hall, 1995.
  • Mackie RI, Sghir A, Gaskins HR. Developmental microbial ecology of the neonatal gastrointestinal tract. Am J Clin Nutr 1999; 69 (suppl): 1035S–45S.
  • Falk PG, Hooper LV, Midtvedt T, Gordon K. Creating and maintaining the gastrointestinal ecosystem: What we know and need to know from gnotobiology. Microbiol Mol Biol Rev 1998; 62: 1157–70.
  • Strauss E. Microbes feature as pathogens and pals at gather-ing. Science 1999; 284: 1916–7.
  • Bry L, Falk PG, Midtvedt T, Gordon K. A model of host-mi-crobial interactions in an open mammalian ecosystem. Science 1996; 273: 1381–3.
  • Hooper LV, Xu J, Falk PG, Midtvedt T, Gordon JI. A molecular sensor that allows a gut commensal to control its nutrient foundation in a competitive ecosystem. Proc Natl Acad Sci USA 1999; 96: 9833–8.
  • Hooper LV, Wong MH, Thelin A, Hansson L, Falk PG, Gordon K. Molecular analysis of host-microbial relationships in the intestine. Science 2000; 291: 881–4.
  • Hackstein JHP, Stumm CK. Methane production in terres-trial arthropods. Proc Natl Acad Sci USA 1994; 91: 5441–5.
  • Hackstein JHP, van Alen TA. Fecal methanogens and verte-brate evolution. Evolution 1996; 50: 559–72.
  • Florin THJ, Zhu G, Kirk KM, Martin NG. Shared and unique environmental factors determine the ecology of methanogens in humans and rats. Am J Gastroenterol 2000; 95: 2872–9.
  • Miller TL, Wolin MJ. Methanogens in human and animal intestinal tracts. Syst Appl Microbiol 1986; 7: 223–9.
  • McCartney AL, Wenzhi W, Tannock GW. Molecular analysis of the composition of the Bifidobacterial and Lactobacillus microflora of humans. Appl Environ Microbiol 1996; 62: 4608–13.
  • Covacci A, Telford JL, Del Giudice G, Parsonnet J, Rappouli R. Helicobacter pylori virulence and genetic geography. Sci-ence 1994; 284: 1328–33.
  • McFarlene GT, Gibson GR. Metabolic activities of the nor-mal colonic microflora. In: Gibson SAW, ed. Human Health: Contribution of Micro Organisms. Frankfurt: Springer, 1994: 17–38.
  • Langendijk PS, Schut F, Jansen GJ, Raangs GC, Camphuis GR, Wilkinson MF, Welling GW. Quantative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal sam-ples. Appl Environ Microbiol 1996; 61: 3069–75.
  • Wilson KH, Blitchington RH. Human colonic biota studied by ribosomal DNA sequence analysis. Appl Environ Micro-biol 1996; 62: 2273–8.
  • Amann RI, Ludwig W, Schleifer K-H. Phylogenetic identifi-cation and in situ detection of individual cells without cultiva-tion. Microbiol Rev 1995; 59: 143–69.
  • Woese CR. Bacterial Evolution. Microb Rev 1987; 51: 221–71.
  • Woese CR. A definition of the domains Archaea, Bacteria, and Eucarya in terms of small subunit ribosomal characteris-tics. Syst Appl Microbiol 1990; 14: 305–10.
  • Zoetendal EG, Akkermans ADL, de Vos WM. Temperature gradient gel electrophoresis analysis from human fecal sam-ples reveals stable and host-specific communities of active bacteria. Appl Environ Microbiol 1998; 64: 3854–9.
  • Franks AH, Harmsen HJ, Raangs GC, Jansen GJ, Schut F, Welling GJ. Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes. Appl Environ Microbiol 1998; 64: 3336–45.
  • Fischer SG, Lerman LS. Lenght-independent separation of DNA restriction fragments in two-dimensional gel elec-trophoresis. Cell 1979; 16: 191–200.
  • Muyzer G, de Waal EC, Uitterlinden GA. Profiling of com-plex populations by denaturating gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 1993; 59: 695–700.
  • Mitsuoka T. Intestinal flora and aging. Nutr Rev 1992; 50: 438–46.
  • Nfibel U, Engelen B, Felske A, et al. Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J Bacte-riol 1996; 178: 5636–43.
  • Sanguinetti CJ, Dias Neto E, Simpson AJG. Rapid silver staining and recovery of PCR products separated on poly-acrylamide gels. Biotechniques 1994; 17: 915–9.
  • Hane BG, Jager K, Drexler H. The pearson product-moment correlation coefficient is better suited for identification of DNA fingerprint profiles than band matching algorithms. Electrophoresis 1993; 14: 967–72.
  • van der Waaij D, Berghuis-de Vries JM, Lekkerkerk-van der Wees JEC. Colonization resistance of the digestive tract in conventional and antibiotic-treated mice. J Hyg 1971; 67:405�11.
  • Muyzer G, Smalla K. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel elec-trophoresis (TGGE) in microbial ecology. Antonie van Leeuwenhoek 1998; 73: 127�41.
  • Vaughan EE, Schut F, Heilig GEL Zoetendal EG, de Vos WM, Akkermans ADL. A molecular view of the intestinal ecosystem. Curr Issues Intest Microbiol 2000; 1: 1–12.
  • Murray AE, Preston CM, Massana R, et al. Phylogenetic compositions of bacterioplankton from two California estuar-ies compared by denaturing gradient gel electrophoresis of 16S rDNA fragments. Appl Environ Microbiol 1998; 62: 2676–80.
  • Simpson JM, McCracken VJ, White BA, Gaskins HR, Mackie RI. Application of denaturing gradient gel elec-trophoresis for the analysis of the porcine gastrointestinal microbiota. J Microbiol Methods 1999; 36: 167–79.