Molecular tools to track bacteria responsible for fuel deterioration and microbiologically influenced corrosion

References

• Aktas , DF , Lee , JS , Little , BJ , Ray , RI , Davidova , IA , Lyles , CN and Suflita , JM . 2010 . Anaerobic metabolism of biodiesel and its impact on metal corrosion . Energ Fuel , 24 : 2924 – 2928 .
   Web of Science ®Google Scholar
• Baek , SH , Cui , Y , Kim , SC , Cui , CH , Yin , C , Lee , ST and Im , WT . 2011 . Tumebacillus ginsengisoli sp. nov., isolated from soil of a ginseng field . Int J Syst Evol Micr , 61 : 1715 – 1719 .
   PubMed Web of Science ®Google Scholar
• DeSantis , TZ , Hugenholtz , P , Keller , K , Brodie , EL , Larsen , N , Piceno , YM , Phan , R and Andersen , GL . 2006 . NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes . Nucleic Acids Res , 34 : W394 – W399 .
   PubMed Web of Science ®Google Scholar
• Duncan , KE , Gieg , LM , Parisi , VA , Tanner , RS , Tringe , SG , Bristow , J and Suflita , JM . 2009 . Biocorrosive thermophilic microbial communities in Alaskan North Slope oil facilities . Environ Sci Technol , 43 : 7977 – 7984 .
   PubMed Web of Science ®Google Scholar
• Edgar , RC , Haas , BJ , Clemente , JC , Quince , C and Knight , R . 2011 . UCHIME improves sensitivity and speed of chimera detection . Bioinformatics , 27 : 2194 – 2200 .
   PubMed Web of Science ®Google Scholar
• Galand , PE , Bourrain , M , De Maistre , E , Catala , P , Desdevises , Y , Elifantz , H and Kirchman DL Lebaron , P . 2012 . Phylogenetic and functional diversity of bacteria and archaea in a unique stratified lagoon, the Clipperton atoll (N Pacific) . FEMS Microbiol Ecol , 79 : 203 – 217 .
   PubMed Web of Science ®Google Scholar
• Gupta , A and Khare , SK . 2009 . Enzymes from solvent-tolerant microbes: useful biocatalysts for non-aqueous enzymology . Crit Rev Biotechnol , 29 : 44 – 54 .
   PubMed Web of Science ®Google Scholar
• Hamady , M , Walker , JJ , Harris , JK , Gold , NJ and Knight , R . 2008 . Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex . Nat Methods , 5 : 235 – 237 .
   PubMed Web of Science ®Google Scholar
• Hamilton , WA and Maxwell , S . Biological and corrosion activities of sulphate-reducing bacteria within natural biofilms . Paper presented at NACE 1986: Biologically Induced Corrosion . pp. 131 – 136 . Houston , TX : NACE International .
   Google Scholar
• Huse , SM , Welch , DM , Morrison , HG and Sogin , ML . 2010 . Ironing out the wrinkles in the rare biosphere through improved OTU clustering . Environ Microbiol , 12 : 1889 – 1898 .
   PubMed Web of Science ®Google Scholar
• Klappenbach , JA , Saxman , PR , Cole , JR and Schmidt , TM . 2001 . rrndb: the Ribosomal RNA Operon Copy Number Database . Nucleic Acids Res , 29 : 181 – 184 .
   PubMed Web of Science ®Google Scholar
• Lee , JS , Little , BJ and Ray , RI . 2006 . Diagnosing microbiologically influenced corrosion: a state-of-the-art review . Corrosion , 62 : 1006 – 1017 .
   Web of Science ®Google Scholar
• Lee , JS , Ray , RI and Little , BJ . Comparison of Key West and Persian Gulf seawaters . Paper No. 07518, presented at NACE 2007: Corrosion . Houston , TX : NACE International .
   Google Scholar
• Lee , JS , Ray , RI and Little , BJ . 2010 . An assessment of alternative diesel fuels: microbiological contamination and corrosion under storage conditions . Biofouling , 26 : 623 – 635 .
   PubMed Web of Science ®Google Scholar
• Lee , JS , Ray , RI , Little , BJ , Duncan , KE , Oldham , AL , Davidova , IA and Suflita , JM . 2012 . Sulphide production and corrosion in seawaters during exposure to FAME diesel . Biofouling , 28 : 465 – 478 .
   PubMed Web of Science ®Google Scholar
• Muyzer , G and Smalla , K . 1998 . Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology . Anton Leeuw Int J G , 73 : 127 – 141 .
   PubMed Web of Science ®Google Scholar
• Onyenwoke , RU , Brill , JA , Farahi , K and Wiegel , J . 2004 . Sporulation genes in members of the low G+C Gram-type-positive phylogenetic branch (Firmicutes) . Arch Microbiol , 182 : 182 – 192 .
   PubMed Web of Science ®Google Scholar
• Reichenbach , H . 1999 . The ecology of the myxobacteria . Environ Microbiol , 1 : 15 – 21 .
   PubMed Web of Science ®Google Scholar
• Schloss , PD , Westcott , SL , Ryabin , T , Hall , JR , Hartmann , M , Hollister , EB , Lesniewski , RA , Oakley , BB , Parks , DH Robinson , CJ . 2009 . Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities . Appl Environ Microbiol , 75 : 7537 – 7541 .
   PubMed Web of Science ®Google Scholar
• Sorensen , G , Pedersen , DV , Norgaard , AK , Sorensen , KB and Nygaard , SD . 2011 . Microbial growth studies in biodiesel blends . Bioresour Technol , 102 : 5259 – 5264 .
   PubMed Web of Science ®Google Scholar
• Steven , B , Chen , MO , Greer , CW , Whyte , LG and Niederberger , TD . 2008 . Tumebacillus permanentifrigoris gen. nov., sp nov., an aerobic, spore-forming bacterium isolated from Canadian high Arctic permafrost . Int J Syst Evol Micr , 58 : 1497 – 1501 .
   PubMed Web of Science ®Google Scholar
• Stevenson , BS , Drilling , HS , Lawson , PA , Duncan , KE , Parisi , VA and Suflita , JM . 2011 . Microbial communities in bulk fluids and biofilms of an oil facility have similar composition but different structure . Environ Microbiol , 13 : 1078 – 1090 .
   PubMed Web of Science ®Google Scholar
• Torres , S , Pandey , A and Castro , GR . 2011 . Organic solvent adaptation of Gram positive bacteria: applications and biotechnological potentials . Biotechnol Adv , 29 : 442 – 452 .
   PubMed Web of Science ®Google Scholar
• Wang , Q , Garrity , GM , Tiedje , JM and Cole , JR . 2007 . Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy . Appl Environ Microbiol , 73 : 5261 – 5267 .
   PubMed Web of Science ®Google Scholar
• Widdel , F and Bak , F . 1992 . The prokaryotes , 3352 – 3378 . New York , NY : Springer .
   Google Scholar
• Yue , JC and Clayton , MK . 2005 . A similarity measure based on species proportions . Commun Stat-Theor M , 34 : 2123 – 2131 .
   Web of Science ®Google Scholar