96-well microtiter plates for biofouling simulation in biomedical settings

References

• Aleviadrou BR, McIntire LV. 1995. Rheology. In: Loscalzo J, Schafer A, editors. Thrombosis and hemorrhage. Cambridge (MA): Blackwell Scientific; p. 369–384.
   Google Scholar
• Alnnasouri M, Dagot C, Pons M-N. 2011. Comparison of four methods to assess biofilm development. Water Sci Technol. 63:432–439.
   PubMed Web of Science ®Google Scholar
• Andersen TE, Kingshott P, Palarasah Y, Benter M, Alei M, Kolmos HJ. 2010. A flow chamber assay for quantitative evaluation of bacterial surface colonization used to investigate the influence of temperature and surface hydrophilicity on the biofilm forming capacity of uropathogenic Escherichia coli. J Microbiol Methods. 81:135–140.
   PubMed Web of Science ®Google Scholar
• Azevedo NF, Pinto AR, Reis NM, Vieira MJ, Keevil CW. 2006. Shear stress, temperature, and inoculation concentration influence the adhesion of water-stressed Helicobacter pylori to stainless steel 304 and polypropylene. Appl Environ Microbiol. 72:2936–2941.
   PubMed Web of Science ®Google Scholar
• Bakker DP, van der Plaats A, Verkerke GJ, Busscher HJ, van der Mei HC. 2003. Comparison of velocity profiles for different flow chamber designs used in studies of microbial adhesion to surfaces. Appl Environ Microbiol. 69:6280–6287.
   PubMed Web of Science ®Google Scholar
• Bark DL, Para AN, Ku DN. 2012. Correlation of thrombosis growth rate to pathological wall shear rate during platelet accumulation. Biotechnol Bioeng. 109:2642–2650.
   PubMed Web of Science ®Google Scholar
• Barrett TA, Wu A, Zhang H, Levy MS, Lye GJ. 2010. Microwell engineering characterization for mammalian cell culture process development. Biotechnol Bioeng. 105:260–275.
   PubMed Web of Science ®Google Scholar
• Brackbill JU, Kothe DB, Zemach C. 1992. A continuum method for modeling surface tension. J Comput Phys. 100:335–354.
   Web of Science ®Google Scholar
• Bryers JD. 2008. Medical biofilms. Biotechnol Bioeng. 100:1–18.
   PubMed Web of Science ®Google Scholar
• Buckingham-Meyer K, Goeres DM, Hamilton MA. 2007. Comparative evaluation of biofilm disinfectant efficacy tests. J Microbiol Methods. 70:236–244.
   PubMed Web of Science ®Google Scholar
• Bühler T, Ballestero S, Desai M, Brown MR. 1998. Generation of a reproducible nutrient-depleted biofilm of Escherichia coli and Burkholderia cepacia. J Appl Microbiol. 85:457–462.
   PubMed Web of Science ®Google Scholar
• Busscher HJ, Van der Mei HC. 2006. Microbial adhesion in flow displacement systems. Clin Microbiol Rev. 19:127–141.
   PubMed Web of Science ®Google Scholar
• Castelijn GAA, van der Veen S, Zwietering MH, Moezelaar R, Abee T. 2012. Diversity in biofilm formation and production of curli fimbriae and cellulose of Salmonella Typhimurium strains of different origin in high and low nutrient medium. Biofouling. 28:51–63.
   PubMed Web of Science ®Google Scholar
• Chesterton AKS, Moggridge GD, Sadd PA, Wilson DI. 2011. Modelling of shear rate distribution in two planetary mixtures for studying development of cake batter structure. J Food Eng. 105:343–350.
   Web of Science ®Google Scholar
• Coenye T, Nelis HJ. 2010. In vitro and in vivo model systems to study microbial biofilm formation. J Microbiol Methods. 83:89–105.
   PubMed Web of Science ®Google Scholar
• Darouiche RO. 2001. Device-associated infections: a macroproblem that starts with microadherence. Clin Infect Dis. 33:1567–1572.
   PubMed Web of Science ®Google Scholar
• Delaquis PJ, Caldwell DE, Lawrence JR, McCurdy AR. 1989. Detachment of Pseudomonas fluorescens from biofilms on glass surfaces in response to nutrient stress. Microbial Ecol. 18:199–210.
   PubMed Web of Science ®Google Scholar
• Donlan RM. 2001. Biofilm formation: a clinically relevant microbiological process. Clin Infect Dis. 33:1387–1392.
   PubMed Web of Science ®Google Scholar
• Donlan RM. 2002. Biofilms: microbial life on surfaces. Emerg Infect Dis. 8:881–890.
   PubMed Web of Science ®Google Scholar
• Dorel C, Lejeune P, Jubelin G. 2006. Role of biofilms in infections caused by Escherichia coli. In: Pace JL, Rupp ME, Finch R, editors. Biofilms, infection, and antimicrobial therapy. Boca Raton (FL): Taylor & Francis; p. 73–80.
   Google Scholar
• Duetz WA. 2007. Microtiter plates as mini-bioreactors: miniaturization of fermentation methods. Trends Microbiol. 15:469–475.
   PubMed Web of Science ®Google Scholar
• Duetz WA, Rüedi L, Hermann R, O’Connor K, Buchs J, Witholt B. 2000. Methods for intense aeration, growth, storage, and replication of bacterial strains in microtiter plates. Appl Environ Microbiol. 66:2641–2646.
   PubMed Web of Science ®Google Scholar
• Dunne WM. 2002. Bacterial adhesion: Seen any good biofilms lately? Clin Microbiol Rev. 15:155–166.
   PubMed Web of Science ®Google Scholar
• Foxman B. 2002. Epidemiology of urinary tract infections: incidence, morbidity, and economic costs. Dis Mon. 49:53–70.
   Web of Science ®Google Scholar
• Frias J, Ribas F, Lucena F. 2001. Effects of different nutrients on bacterial growth in a pilot distribution system. Antonie van Leeuwenhoek. 80:129–138.
   PubMed Web of Science ®Google Scholar
• Fux CA, Wilson S, Stoodley P. 2004. Detachment characteristics and oxacillin resistance of Staphyloccocus aureus biofilm emboli in an in vitro catheter infection model. J Bacteriol. 186:4486–4491.
   PubMed Web of Science ®Google Scholar
• Hancock V, Ferrières L, Klemm P. 2007. Biofilm formation by asymptomatic and virulent urinary tract infectious Escherichia coli strains. FEMS Microbiol Lett. 267:30–37.
   PubMed Web of Science ®Google Scholar
• Hermann R, Lehmann M, Büchs J. 2003. Characterization of gas-liquid mass transfer phenomena in microtiter plates. Biotechnol Bioeng. 81:178–186.
   PubMed Web of Science ®Google Scholar
• Hirt CW, Nichols BD. 1981. Volume of fluid (VOF) method for the dynamics of free boundaries. J Comput Phys. 39:201–225.
   Web of Science ®Google Scholar
• Holubar P, Andorfer C, Braun R. 1999. Effects of nitrogen limitation on biofilm formation in a hydrocarbon-degrading trickle-bed filter. Appl Microbiol Biotechnol. 51:536–540.
   PubMed Web of Science ®Google Scholar
• Huang C-T, Peretti SW, Bryers JD. 1994. Effects of medium carbon-to-nitrogen ratio on biofilm formation and plasmid stability. Biotechnol Bioeng. 44:329–336.
   PubMed Web of Science ®Google Scholar
• Inauen W, Baumgartner HR, Bombeli T, Haeberli A, Straub PW. 1990. Dose- and shear rate-dependent effects of heparin on thrombogenesis induced by rabbit aorta subendothelium exposed to flowing human blood. Arterioscler Thromb Vasc Biol. 10:607–615.
   Google Scholar
• Jacobsen SM, Stickler DJ, Mobley HLT, Shirtliff ME. 2008. Complicated catheter-associated urinary tract infections due to Escherichia coli and Proteus mirabilis. Clin Microbiol Rev. 21:26–59.
   PubMed Web of Science ®Google Scholar
• Kensy F, Zimmermann HF, Knabben I, Anderlei T, Trauthwein H, Dingerdissen U, Büchs J. 2005. Oxygen transfer phenomena in 48-well microtiter plates: determination by optical monitoring of sulfite oxidation and verification by real-time measurement during microbial growth. Biotechnol Bioeng. 89:698–708.
   PubMed Web of Science ®Google Scholar
• Klahre J, Flemming HC. 2000. Monitoring of biofouling in papermill process waters. Water Res. 34:3657–3665.
   Web of Science ®Google Scholar
• Kostenko V, Salek MM, Sattari P, Martinuzzi RJ. 2010. Staphylococcus aureus biofilm formation and tolerance to antibiotics in response to oscillatory shear stresses of physiological levels. FEMS Immunol Med Microbiol. 59:421–431.
   PubMed Web of Science ®Google Scholar
• Leroy C, Delbarre C, Ghillebaert F, Compere C, Combes D. 2007. Effects of commercial enzymes on the adhesion of a marine biofilm-forming bacterium. Biofouling. 24:11–22.
   Web of Science ®Google Scholar
• Liu Y, Tay J-H. 2002. The essential role of hydrodynamic shear force in the formation of biofilm and granular sludge. Water Res. 36:1653–1665.
   PubMed Web of Science ®Google Scholar
• Mareels G. 2007. Experimental and numerical modeling of flow and mass transport in a bioartificial liver [PhD thesis]. Ghent: Ghent University.
   Google Scholar
• Mareels G, Kaminsky R, Eloot S, Verdonck PR. 2007. Particle image velocimetry-validated, computational fluid dynamics-based design to reduce shear stress and residence time in central venous hemodialysis catheters. ASAIO J. 53:438–446.
   PubMed Web of Science ®Google Scholar
• McClaine JW, Ford RM. 2002. Characterizing the adhesion of motile and nonmotile Escherichia coli to a glass surface using a parallel-plate flow chamber. Biotechnol Bioeng. 78:179–189.
   PubMed Web of Science ®Google Scholar
• Michelson AD. 2002. Platelets. New York: Academic Press/Elsevier Science.
   Google Scholar
• Moreira JMR, Teodósio JS, Silva FC, Simões M, Melo LF, Mergulhão FJ. 2013a. Influence of flow rate variation on the development of Escherichia coli biofilms. Bioprocess Biosyst Eng. 36:1787–1796.
   PubMed Web of Science ®Google Scholar
• Moreira JMR, Gomes LC, Araújo JDP, Miranda JM, Simões M, Melo LF, Mergulhão FJ. 2013b. The effect of glucose concentration and shaking conditions on Escherichia coli biofilm formation in microtiter plates. Chem Eng Sci. 94:192–199.
   Web of Science ®Google Scholar
• Mukherjee PK, Chand DV, Chandra J, Anderson JM, Ghannoum MA. 2009. Shear stress modulates the thickness and architecture of Candida albicans biofilms in a phase-dependent manner. Mycoses. 52:440–446.
   PubMed Web of Science ®Google Scholar
• Newman DK. 2008. Internal and external urinary catheters: a primer for clinical practice. Ostomy Wound Manag. 54:18–35.
   PubMed Web of Science ®Google Scholar
• Ortiz-Ochoa K, Doig SD, Ward JM, Baganz F. 2005. A novel method for the measurement of oxygen mass transfer rates in small-scale vessels. Biochem Eng J. 25:63–68.
   Web of Science ®Google Scholar
• Percival SL, Knapp JS, Wales DS, Edyvean RGJ. 1999. The effect of turbulent flow and surface roughness on biofilm formation in drinking water. J Ind Microbiol Biot. 22:152–159.
   Web of Science ®Google Scholar
• Pereira MO, Vieira MJ. 2001. Effects of the interactions between glutaraldehyde and the polymeric matrix on the efficacy of the biocide against Pseudomonas fluorescens biofilms. Biofouling. 17:93–101.
   Web of Science ®Google Scholar
• Peyton BM. 1996. Effects of shear stress and substrate loading rate on Pseudomonas aeruginosa biofilm thickness and density. Water Res. 30:29–36.
   Web of Science ®Google Scholar
• Rochex A, Lebeault JM. 2007. Effects of nutrients on biofilm formation and detachment of a Pseudomonas putida strain isolated from a paper machine. Water Res. 41:2885–2892.
   PubMed Web of Science ®Google Scholar
• Rodrigues DF, Elimelech M. 2009. Role of type 1 fimbriae and mannose in the development of Escherichia coli K12 biofilm: from initial cell adhesion to biofilm formation. Biofouling. 25:401–411.
   PubMed Web of Science ®Google Scholar
• Salek M, Sattari P, Martinuzzi R. 2012. Analysis of fluid flow and wall shear stress patterns inside partially filled agitated culture well plates. Ann Biomed Eng. 40:707–728.
   PubMed Web of Science ®Google Scholar
• Salo J, Sevander JJ, Tapiainen T, Ikäheimo I, Pokka T, Koskela M, Uhari M. 2009. Biofilm formation by Escherichia coli isolated from patients with urinary tract infections. Clin Nephrol. 71:501–507.
   PubMed Web of Science ®Google Scholar
• Schinabeck MK, Ghannoum MA. 2006. Biofilm-related indwelling medical device infections. In: Pace JL, Rupp ME, editors. Biofilms, infection, and antimicrobial therapy. Boca Raton (FL): Taylor & Francis; p. 39–48.
   Google Scholar
• Shakeri S, Kermanshahi RK, Moghaddam MM, Emtiazi G. 2007. Assessment of biofilm cell removal and killing and biocide efficacy using the microtiter plate test. Biofouling. 23:79–86.
   PubMed Web of Science ®Google Scholar
• Simões M, Pereira MO, Vieira MJ. 2005. Validation of respirometry as a short-term method to assess the efficacy of biocides. Biofouling. 21:9–17.
   PubMed Web of Science ®Google Scholar
• Simões M, Pereira MO, Sillankorva S, Azeredo J, Vieira MJ. 2007. The effect of hydrodynamic conditions on the phenotype of Pseudomonas fluorescens biofilms. Biofouling. 23:249–258.
   PubMed Web of Science ®Google Scholar
• Simões LC, Simões M, Vieira MJ. 2010. Adhesion and biofilm formation on polystyrene by drinking water-isolated bacteria. Antonie van Leeuwenhoek. 98:317–329.
   PubMed Web of Science ®Google Scholar
• Simões M, Simões LC, Vieira MJ. 2010. A review of current and emergent biofilm control strategies. LWT-Food Sci Technol. 43:573–583.
   Web of Science ®Google Scholar
• Singh PK, Marzo A, Howard B, Rufenacht DA, Bijlenga P, Frangi AF, Lawford PV, Coley SC, Hose DR, Patel UJ. 2010. Effects of smoking and hypertension on wall shear stress and oscillatory shear index at the site of intracranial aneurysm formation. Clin Neurol Neurosurg. 112:306–313.
   PubMed Web of Science ®Google Scholar
• Sonak S, Bhosle NB. 1995. A simple method to assess bacterial attachment to surfaces. Biofouling. 9:31–38.
   Web of Science ®Google Scholar
• Stoodley P, Dodds I, Boyle JD, Lappin-Scott HM. 1998. Influence of hydrodynamics and nutrients on biofilm structure. J Appl Microbiol. 85:19S–28S.
   PubMed Web of Science ®Google Scholar
• Stoodley P, Wilson S, Hall-Stoodley L, Boyle JD, Lappin-Scott HM, Costerton JW. 2001. Growth and detachment of cell clusters from mature mixed-species biofilms. Appl Environ Microbiol. 67:5608–5613.
   PubMed Web of Science ®Google Scholar
• Telgmann U, Horn H, Morgenroth E. 2004. Influence of growth history on sloughing and erosion from biofilms. Water Res. 38:3671–3684.
   PubMed Web of Science ®Google Scholar
• Teodósio JS, Simões M, Melo LF, Mergulhão FJ. 2011a. Flow cell hydrodynamics and their effects on E. coli biofilm formation under different nutrient conditions and turbulent flow. Biofouling. 27:1–11.
   PubMed Web of Science ®Google Scholar
• Teodósio JS, Simões M, Melo LF, Mergulhão FJ. 2011b. The influence of the nutrient load on the formation of Escherichia coli biofilms. In: Berhardt LV, editor. Advances in medicine and biology. New York: Nova Science Publishers, Inc.; p. 153–168.
   Google Scholar
• Teodósio JS, Simões M, Mergulhão FJ. 2012. The influence of nonconjugative Escherichia coli plasmids on biofilm formation and resistance. J Appl Microbiol. 113:373–382.
   PubMed Web of Science ®Google Scholar
• Teodósio JS, Silva FC, Moreira JMR, Simões M, Melo LF, Alves MA, Mergulhão FJ. 2013. Flow cells as quasi-ideal systems for biofouling simulation of industrial piping systems. Biofouling. 29:953–966.
   PubMed Web of Science ®Google Scholar
• Thomas WE, Trintchina E, Forero M, Vogel V, Sokurenko EV. 2002. Bacterial adhesion to target cells enhanced by shear force. Cell. 109:913–923.
   PubMed Web of Science ®Google Scholar
• Tran VB, Fleiszig SMJ, Evans DJ, Radke CJ. 2011. Dynamics of fagellum- and pilus-mediated association of Pseudomonas aeruginosa with contact lens surfaces. Appl Environ Microbiol. 77:3644–3652.
   PubMed Web of Science ®Google Scholar
• Tranoudis I, Efron N. 2004. Tensile properties of soft contact lens materials. Cont Lens Anterior Eye. 27:177–191.
   PubMedGoogle Scholar
• Ulett GC, Mabbett AN, Fung KC, Webb RI, Schembri MA. 2007. The role of F9 fimbriae of uropathogenic Escherichia coli in biofilm formation. Microbiology. 153:2321–2331.
   PubMed Web of Science ®Google Scholar
• van Loosdrecht MCM, Eikelboom D, Gjaltema A, Mulder A, Tijhuis L, Heijnen JJ. 1995. Biofilm structures. Water Sci Technol. 32:35–43.
   Web of Science ®Google Scholar
• Vejborg RM, Klemm P. 2008. Blocking of bacterial biofilm formation by a fish protein coating. Appl Environ Microbiol. 74:3551–3558.
   PubMed Web of Science ®Google Scholar
• Velraeds MMC, Van de Belt-Gritter B, Van der Mei HC, Reid G, Busscher HJ. 1998. Interface in initial adhesion of uropathogenic bacteria and yeasts to silicone rubber by a Lactobacillus acidophilos biosurfactant. J Med Microbiol. 47:1081–1085.
   PubMed Web of Science ®Google Scholar
• Vieira MJ, Melo LF, Pinheiro MM. 1993. Biofilm formation: hydrodynamic effects on internal diffusion and structure. Biofouling. 7:67–80.
   Google Scholar
• Volk CJ, LeChevallier MW. 1999. Impacts of the reduction of nutrient levels on bacterial water quality in distribution systems. Appl Environ Microbiol. 65:4957–4966.
   PubMed Web of Science ®Google Scholar
• Wäsche S, Horn H, Hempel DC. 2002. Influence of growth conditions on biofilm development and mass transfer at the bulk/biofilm interface. Water Res. 36:4775–4784.
   PubMed Web of Science ®Google Scholar
• Yataghene M, Pruvost J, Fayolle F, Legrand J. 2008. CFD analysis of the flow pattern and local shear rate in a scraped surface heat exchanger. Chem Eng Process. 47:1550–1561.
   Web of Science ®Google Scholar
• Youngs DL. 1982. Time-dependent multi-material flow with large fluid distortion. In: Morton KW, Baibnes MJ, editors. Numerical methods for fluid dynamics. New York: Academic Press; p. 273–285.
   Google Scholar
• Zhang H, Lamping SR, Pickering SCR, Lye GJ, Shamlou PA. 2008. Engineering characterisation of a single well from 24-well and 96-well microtitre plates. Biochem Eng J. 40:138–149.
   Web of Science ®Google Scholar