Membrane biofouling characterization: effects of sample preparation procedures on biofilm structure and the microbial community

References

• Ahmed Z, Cho J, Lim B-R, Song K-G, Ahn K-H. 2007. Effects of sludge retention time on membrane fouling and microbial community structure in a membrane bioreactor. J Membr Sci. 287:211–218.10.1016/j.memsci.2006.10.036
   Web of Science ®Google Scholar
• Ciston S, Lueptow RM, Gray KA. 2009. Controlling biofilm growth using reactive ceramic ultrafiltration membranes. J Membr Sci. 342:263–268.10.1016/j.memsci.2009.06.049
   Web of Science ®Google Scholar
• de Lipthay JR, Enzinger C, Johnsen K, Aamand J, Sørensen SJ. 2004. Impact of DNA extraction method on bacterial community composition measured by denaturing gradient gel electrophoresis. Soil Biol Biochem. 36:1607–1614.10.1016/j.soilbio.2004.03.011
   Web of Science ®Google Scholar
• Dionisi HM, Layton AC, Harms G, Gregory IR, Robinson KG, Sayler GS. 2002. Quantification of Nitrosomonas oligotropha-like ammonia-oxidizing bacteria and Nitrospira spp. from full-scale wastewater treatment plants by competitive PCR. Appl Environ Microbiol. 68:245–253.10.1128/AEM.68.1.245-253.2002
   PubMed Web of Science ®Google Scholar
• Fan X-J, Urbain V, Qian Y, Manem J. 1996. Nitrification and mass balance with a membrane bioreactor for municipal wastewater treatment. Water Sci Technol. 34:129–136.10.1016/0273-1223(96)00502-1
   Web of Science ®Google Scholar
• Ghyoot W, Vandaele S, Verstraete W. 1999. Nitrogen removal from sludge reject water with a membrane-assisted bioreactor. Water Res. 33:23–32.10.1016/S0043-1354(98)00190-0
   Web of Science ®Google Scholar
• Heydorn A, Nielsen TA, Hentzer M, Sternberg C, Givskov M, Ersboll KB, Molin S. 2000. Quantification of biofilm structures by the novel program COMSTAT. Microbiology. 146:2395–2407.
   PubMed Web of Science ®Google Scholar
• Ho CC, Zydney AL. 2000. A combined pore blockage and cake filtration model for protein fouling during microfiltration. J Colloid Interface Sci. 232:389–399.10.1006/jcis.2000.7231
   PubMed Web of Science ®Google Scholar
• Hwang B-K, Lee C-H, Chang I-S, Drews A, Field R. 2012. Membrane bioreactor: TMP rise and characterization of bio-cake structure using CLSM-image analysis. J Membr Sci. 419–420:33–41.10.1016/j.memsci.2012.06.031
   Web of Science ®Google Scholar
• Ivnitsky H, Katz I, Minz D, Volvovic G, Shimoni E, Kesselman E, Semiat R, Dosoretz CG. 2007. Bacterial community composition and structure of biofilms developing on nanofiltration membranes applied to wastewater treatment. Water Res. 41:3924–3935.10.1016/j.watres.2007.05.021
   PubMed Web of Science ®Google Scholar
• Kindaichi T, Ito T, Okabe S. 2004. Ecophysiological interaction between nitrifying bacteria and heterotrophic bacteria in autotrophic nitrifying biofilms as determined by microautoradiography-fluorescence in situ hybridization. Appl Environ Microbiol. 70:1641–1650.10.1128/AEM.70.3.1641-1650.2004
   PubMed Web of Science ®Google Scholar
• Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD. 2013. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform. Appl Environ Microbiol. 79:5112–5120.10.1128/AEM.01043-13
   PubMed Web of Science ®Google Scholar
• Laspidou CS, Rittmann BE. 2004. Evaluating trends in biofilm density using the UMCCA model. Water Res. 38:3362–3372.10.1016/j.watres.2004.04.051
   PubMed Web of Science ®Google Scholar
• Lauber CL, Zhou N, Gordon JI, Knight R, Fierer N. 2010. Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples. FEMS Microbiol Lett. 307:80–86.10.1111/fml.2010.307.issue-1
   PubMed Web of Science ®Google Scholar
• Lazarevic V, Gaïa N, Girard M, François P, Schrenzel J. 2013. Comparison of DNA extraction methods in analysis of salivary bacterial communities. PLoS ONE. 8:e67699.10.1371/journal.pone.0067699
   Web of Science ®Google Scholar
• Le-Clech P, Chen V, Fane TA. 2006. Fouling in membrane bioreactors used in wastewater treatment. J Membr Sci. 284:17–53.10.1016/j.memsci.2006.08.019
   Web of Science ®Google Scholar
• Lepš J, Šmilauer P. 2003. Multivariate analysis of ecological data using Canoco. Cambridge: Cambridge University Press.
   Google Scholar
• Liang Z, Li W, Yang S, Du P. 2010. Extraction and structural characteristics of extracellular polymeric substances (EPS), pellets in autotrophic nitrifying biofilm and activated sludge. Chemosphere. 81:626–632.10.1016/j.chemosphere.2010.03.043
   PubMed Web of Science ®Google Scholar
• Maarit Niemi R, Heiskanen I, Wallenius K, Lindström K. 2001. Extraction and purification of DNA in rhizosphere soil samples for PCR-DGGE analysis of bacterial consortia. J Microbiol Methods. 45:155–165.10.1016/S0167-7012(01)00253-6
   PubMed Web of Science ®Google Scholar
• Martin-Laurent F, Philippot L, Hallet S, Chaussod R, Germon JC, Soulas G, Catroux G. 2001. DNA extraction from soils: old bias for new microbial diversity analysis methods. Appl Environ Microbiol. 67:2354–2359.10.1128/AEM.67.5.2354-2359.2001
   PubMed Web of Science ®Google Scholar
• Martinko MT, Madigan JM. 2005. Brock biology of microorganisms. 11th ed. New Jersey: Prentice-Hall.
   Google Scholar
• Okabe S, Kindaichi T, Ito T. 2005. Fate of 14C-labeled microbial products derived from nitrifying bacteria in autotrophic nitrifying biofilms. Appl Environ Microbiol. 71:3987–3994.10.1128/AEM.71.7.3987-3994.2005
   PubMed Web of Science ®Google Scholar
• Pasmore M, Todd P, Smith S, Baker D, Silverstein J, Coons D, Bowman CN. 2001. Effects of ultrafiltration membrane surface properties on Pseudomonas aeruginosa biofilm initiation for the purpose of reducing biofouling. J Membr Sci. 194:15–32.10.1016/S0376-7388(01)00468-9
   Web of Science ®Google Scholar
• Peter-Varbanets M, Margot J, Traber J, Pronk W. 2011. Mechanisms of membrane fouling during ultra-low pressure ultrafiltration. J Membr Sci. 377:42–53.10.1016/j.memsci.2011.03.029
   Web of Science ®Google Scholar
• Rubin BER, Gibbons SM, Kennedy S, Hampton-Marcell J, Owens S, Gilbert JA. 2013. Investigating the impact of storage conditions on microbial community composition in soil samples. PLoS ONE. 8:e70460.10.1371/journal.pone.0070460
   PubMed Web of Science ®Google Scholar
• Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, et al. 2009. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol. 75:7537–7541.10.1128/AEM.01541-09
   PubMed Web of Science ®Google Scholar
• Schramm A, De Beer D, Gieseke A, Amann R. 2000. Microenvironments and distribution of nitrifying bacteria in a membrane-bound biofilm. Environ Microbiol. 2:680–686.10.1046/j.1462-2920.2000.00150.x
   PubMed Web of Science ®Google Scholar
• Shannon CE. 1948. A mathematical theory of communication. Bell Syst Tech J. 27:379–423.10.1002/bltj.1948.27.issue-3
   Web of Science ®Google Scholar
• Strathmann M, Wingender J, Flemming H-C. 2002. Application of fluorescently labelled lectins for the visualization and biochemical characterization of polysaccharides in biofilms of Pseudomonas aeruginosa. J Microbiol Methods. 50:237–248.10.1016/S0167-7012(02)00032-5
   PubMed Web of Science ®Google Scholar
• Sun C, Fiksdal L, Hanssen-Bauer A, Rye MB, Leiknes T. 2011. Characterization of membrane biofouling at different operating conditions (flux) in drinking water treatment using confocal laser scanning microscopy (CLSM) and image analysis. J Membr Sci. 382:194–201.10.1016/j.memsci.2011.08.010
   Web of Science ®Google Scholar
• Ter Braak CJF, Looman CWN. 1994. Biplots in reduced–rank regression. Biom J. 36:983–1003.10.1002/(ISSN)1521-4036
   Web of Science ®Google Scholar
• ter Braak CJF, Smilauer P. 2002. CANOCO reference manual and CanoDraw for Windows user’s guide: software for canonical community ordination. Ithaca (NY): Microcomputer Power.
   Google Scholar
• Thompson J, Lin N, Lyster E, Arbel R, Knoell T, Gilron J, Cohen Y. 2012. RO membrane mineral scaling in the presence of a biofilm. J Membr Sci. 415:181–191.10.1016/j.memsci.2012.04.051
   Web of Science ®Google Scholar
• Tzeneva VA, Salles JF, Naumova N, de Vos WM, Kuikman PJ, Dolfing J, Smidt H. 2009. Effect of soil sample preservation, compared to the effect of other environmental variables, on bacterial and eukaryotic diversity. Res Microbiol. 160:89–98.10.1016/j.resmic.2008.12.001
   PubMed Web of Science ®Google Scholar
• Venault A, Chang Y, Wang D-M, Bouyer D, Higuchi A, Lai J-Y. 2012. PEGylation of anti-biofouling polysulfone membranes via liquid-and vapor-induced phase separation processing. J Membr Sci. 403:47–57.10.1016/j.memsci.2012.02.019
   Web of Science ®Google Scholar
• Wu B, Kitade T, Chong TH, Uemura T, Fane AG. 2012. Role of initially formed cake layers on limiting membrane fouling in membrane bioreactors. Bioresour Technol. 118:589–593.10.1016/j.biortech.2012.05.016
   PubMed Web of Science ®Google Scholar
• Xue Z, Hessler CM, Panmanee W, Hassett DJ, Seo Y. 2013. Pseudomonas aeruginosa inactivation mechanism is affected by capsular extracellular polymeric substances reactivity with chlorine and monochloramine. FEMS Microbiol Ecol. 83:101–111.10.1111/fem.2012.83.issue-1
   PubMed Web of Science ®Google Scholar
• Yang Y, Sreenivasan PK, Subramanyam R, Cummins D. 2006. Multiparameter assessments to determine the effects of sugars and antimicrobials on a polymicrobial oral biofilm. Appl Environ Microbiol. 72:6734–6742.10.1128/AEM.01013-06
   PubMed Web of Science ®Google Scholar
• Zhu X, Bai R, Wee K-H, Liu C, Tang S-L. 2010. Membrane surfaces immobilized with ionic or reduced silver and their anti-biofouling performances. J Membr Sci. 363:278–286.10.1016/j.memsci.2010.07.041
   Web of Science ®Google Scholar