Worldwide genetic differentiation in the common fouling barnacle, Amphibalanus amphitrite

References

• [AMBS] Australian Museum Business Service. 2002. Port survey for introduced marine species – Sydney Harbour final report. Report prepared for Sydney Ports Corporation; May 7.
   Google Scholar
• Bertness MD, Gaines SD. 1993. Larval dispersal and local adaptation in acorn barnacles. Evolution. 47:316–320.10.2307/2410140
   Web of Science ®Google Scholar
• Carlton JT, Eldredge LG. 2009. Marine bioinvasions of Hawaii: the introduced and cryptogenic marine and estuarine animals and plants of the Hawaiian Archipelago. Honolulu: Bishop Museum Press.
   Google Scholar
• Carlton JT, Newman WA. 2009. Reply to Clare and Høeg 2008. Balanus amphitrite or Amphibalanus amphitrite? A note on barnacle nomenclature. Biofouling. 25:77–80.
   PubMed Web of Science ®Google Scholar
• Carlton JT, Newman WA, Pitombo FB. 2011. The global dispersal of marine and estuarine crustacea. In: Galil BS, Clark PF, Carlton JT, editors. In the wrong place – alien marine crustaceans: distribution, biology and impacts. New York (NY): Springer; p. 159–213.10.1007/978-94-007-0591-3
   Google Scholar
• Chan BKK, Tsang LM, Chu KH. 2007. Morphological and genetic differentiation of the acorn barnacle Tetraclita squamosa (Crustacea, Cirripedia) in East Asia and description of a new species of Tetraclita. Zool Scr. 36:79–91.10.1111/zsc.2007.36.issue-1
   Web of Science ®Google Scholar
• Chaw KC, Dickinson GH, Ang K, Deng J, Birch WR. 2011. Surface exploration of Amphibalanus amphitrite cyprids on microtextured surfaces. Biofouling. 27:413–422.10.1080/08927014.2011.577210
   PubMed Web of Science ®Google Scholar
• Chen H-N, Høeg JT, Chan BKK. 2013. Morphometric and molecular identification of individual barnacle cyprids from wild plankton: an approach to detecting fouling and invasive barnacle species. Biofouling. 29:133–145.10.1080/08927014.2012.753061
   PubMed Web of Science ®Google Scholar
• Chen Z-F, Zhang H, Wang H, Matsumura K, Wong YH, Ravasi T, Qian P-Y. 2014. Quantitative proteomics study of larval settlement in the barnacle Balanus amphitrite. PLoS ONE. 9:e88774.
   PubMed Web of Science ®Google Scholar
• Clare AS, Høeg JT. 2008. Balanus amphitrite or Amphibalanus amphitrite? A note on barnacle nomenclature. Biofouling. 24:55–57.10.1080/08927010701830194
   PubMed Web of Science ®Google Scholar
• Clarke KR. 1993. Non-parametric multivariate analyses of changes in community structure. Aust J Ecol. 18:117–143.10.1111/aec.1993.18.issue-1
   Web of Science ®Google Scholar
• Clement M, Posada D, Crandall KA. 2000. TCS: a computer program to estimate gene genealogies. Mol Ecol. 9:1657–1659.10.1046/j.1365-294x.2000.01020.x
   PubMed Web of Science ®Google Scholar
• Darwin C. 1854. A monograph on the sub-class Cirripedia II the Balanidae, (or Sessile Cirripedes), the Verrucidae. London: Ray Society.
   Google Scholar
• Dash S, Chandramouli KH, Zhang Y, Qian P-Y. 2012. Effects of poly-ether B on proteome and phosphoproteome expression in biofouling Balanus amphitrite cyprids. Biofouling. 28:405–415.10.1080/08927014.2012.679731
   PubMed Web of Science ®Google Scholar
• Dawson MN, Sen Gupta A, England MH. 2005. Coupled biophysical global ocean model and molecular genetic analyses identify multiple introductions of cryptogenic species. P Natl Acad Sci USA. 102:11968–11973.10.1073/pnas.0503811102
   PubMed Web of Science ®Google Scholar
• De Gregoris TB, Rupp O, Klages S, Knaust F, Bekel T, Kube M, Burgess JG, Arnone MI, Goesmann A, Reinhardt R, Clare AS. 2011. Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite. Biofouling. 27:367–374.10.1080/08927014.2011.577211
   PubMed Web of Science ®Google Scholar
• Edgar RC. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinform. 5:1–19.
   PubMed Web of Science ®Google Scholar
• Excoffier L, Lischer HEL. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour. 10:564–567.10.1111/men.2010.10.issue-3
   PubMed Web of Science ®Google Scholar
• Flowerdew MW. 1985. Indices of genetic identity and distance in three taxa within the Balanus amphitrite Darwin complex (Cirripedia, Thoracica). Crustaceana. 49:7–15.10.1163/156854085X00143
   Web of Science ®Google Scholar
• Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol. 3:294–299.
   PubMedGoogle Scholar
• Fu YX. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics. 147:915–925.
   PubMed Web of Science ®Google Scholar
• Harding JP. 1962. Darwin’s type specimens of varieties of Balanus amphitrite. Bull Br Mus Nat Hist Zool. 9:273–296.
   Google Scholar
• Henry DP, McLaughlin PA. 1975. The barnacles of the Balanus amphitrite complex (Cirripedia, Thoracica). Zool Verh Leiden. 141:1–254.
   Google Scholar
• Hewitt CL, Campbell ML, Thresher RE, Martin RB, Boyd S, Cohen BF, Currie DR, Gomon MF, Keough MJ, Lewis JA, et al. 2004. Introduced and cryptogenic species in Port Phillip Bay, Victoria, Australia. Mar Biol. 144:183–202.
   Web of Science ®Google Scholar
• Hoedt FE, Choat JH, Cruz JJ, Neil KM, Collins J. 2001. Survey of the Port of Weipa: port marine baseline surveys and surveys for introduced marine pests. CRC Reef Research Centre and James Cook University School of Marine Biology and Aquaculture. Report to Ports Corporation of Queensland.
   Google Scholar
• Holm ER, McClary M, Rittschof D. 2000. Variation in attachment of the barnacle Balanus amphitrite: sensation or something else? Mar Ecol Prog Ser. 202:153–162.10.3354/meps202153
   Web of Science ®Google Scholar
• Holm ER, Orihuela B, Kavanagh CJ, Rittschof D. 2005. Variation among families for characteristics of the adhesive plaque in the barnacle Balanus amphitrite. Biofouling. 21:121–126.10.1080/08927010512331344188
   PubMed Web of Science ®Google Scholar
• Holm ER, Kavanagh CJ, Orihuela B, Rittschof D. 2009. Phenotypic variation for adhesive tenacity in the barnacle Balanus amphitrite. J Exp Mar Biol Ecol. 380:61–67.10.1016/j.jembe.2009.06.026
   Web of Science ®Google Scholar
• Jones DS. 2004. Barnacles (Cirripedia: Thoracica) of the Dampier Archipelago. Western Australia Rec Aust Mus Suppl. 66:121–157.
   Google Scholar
• Karande AA. 1965. On cirripede crustaceans (barnacles) an important fouling group in Bombay waters. Proc Symp Crust J Mar Biol Assoc India 4:1945–1950.
   Google Scholar
• Keshavmurthy S, Yang S-Y, Alamaru A, Chuang Y-Y, Pichon M, Obura D, Fontana S, De Palmas S, Stefani F, Benzoni F, et al. 2013. DNA barcoding reveals the coral “laboratory-rat’’, Stylophora pistillata encompasses multiple identities. Sci Rep. 3:1520.
   PubMed Web of Science ®Google Scholar
• Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 16:111–120.10.1007/BF01731581
   PubMed Web of Science ®Google Scholar
• Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 25:1451–1452.10.1093/bioinformatics/btp187
   PubMed Web of Science ®Google Scholar
• Maggs CA, Castilho R, Foltz D, Henzler C, Jolly MT, Kelly J, Olsen J, Perez KE, Stam W, Vainola R, et al. 2008. Evaluating signatures of glacial refugia for North Atlantic benthic marine taxa. Ecology. 89:108–122.10.1890/08-0257.1
   PubMed Web of Science ®Google Scholar
• Maruzzo D, Aldred N, Clare AS, Høeg JT. 2012. Metamorphosis in the cirripede crustacean Balanus amphitrite. PLoS ONE. 7:e37408.10.1371/journal.pone.0037408
   PubMed Web of Science ®Google Scholar
• Maruzzo D, Conlan S, Aldred N, Clare AS, Høeg JT. 2011. Video observation of surface exploration in cyprids of Balanus amphitrite: the movements of antennular sensory setae. Biofouling. 27:225–239.10.1080/08927014.2011.555534
   PubMed Web of Science ®Google Scholar
• McDonald MR, McClintock JB, Amsler CD, Rittschof D, Angus RA, Orihuela B, Lutostanski K. 2009. Effects of ocean acidification over the life history of the barnacle Amphibalanus amphitrite. Mar Ecol Prog Ser. 385:179–187.10.3354/meps08099
   Web of Science ®Google Scholar
• Newman WA, Ross A. 1976. Revision of the balanomorph barnacles; including a catalog of the species. San Diego Soc Nat Hist Mem. 9:1–108.
   Google Scholar
• Nilsson-Cantell CA. 1938. Cirrepedes from Indian Ocean in the collection of the Indian Museum, Calcutta. Mem Indian Mus. 13:1–81.
   Google Scholar
• Petrone L, Lee SSC, Teo SLM, Birch WR. 2013. A novel geometry for a laboratory-based larval settlement assay. Biofouling. 29:213–221.10.1080/08927014.2012.762643
   PubMed Web of Science ®Google Scholar
• Piola RF, Johnston EL. 2006. Differential tolerance to metals among populations of the introduced bryozoan Bugula neritina. Mar Biol. 148:997–1010.10.1007/s00227-005-0156-5
   Web of Science ®Google Scholar
• Posada D. 2008. jModelTest: phylogenetic model averaging. Mol Biol Evol. 25:1253–1256.10.1093/molbev/msn083
   PubMed Web of Science ®Google Scholar
• Qiu JW, Qian PY. 1999. Tolerance of the barnacle Balanus amphitrite amphitrite to salinity and temperature stress: effects of previous experience. Mar Ecol Prog Ser. 188:123–132.10.3354/meps188123
   Web of Science ®Google Scholar
• Raimondi PT. 1992. Adult plasticity and rapid larval evolution in recent isolated barnacle population. Biol Bull. 182:210–220.10.2307/1542114
   Web of Science ®Google Scholar
• Rittschof D, Clare AS, Gerhart DJ, Mary A, Bonaventura J. 1992. Barnacle in vitro assays for biologically active substances: toxicity and settlement inhibition assays using mass cultured Balanus amphitrite amphitrite Darwin. Biofouling. 6:115–122.10.1080/08927019209386217
   Web of Science ®Google Scholar
• Romano JA, Rittschof D, McClellan-Green PD, Holm ER. 2010. Variation in toxicity of copper pyrithione among populations and families of the barnacle, Balanus amphitrite. Biofouling. 26:341–347.10.1080/08927010903511618
   PubMed Web of Science ®Google Scholar
• Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19:1572–1574.10.1093/bioinformatics/btg180
   PubMed Web of Science ®Google Scholar
• Schmidt PS, Bertness MD, Rand DM. 2000. Environmental heterogeneity and balancing selection in the acorn barnacle Semibalanus balanoides. P Roy Soc Lond B Bio. 267:379–384.10.1098/rspb.2000.1012
   Web of Science ®Google Scholar
• Schmidt PS, Rand DM. 1999. Intertidal microhabitat and selection at MPI: interlocus contrasts in the northern acorn barnacle Semibalanus balanoides. Evolution. 53:135–146.10.2307/2640926
   Web of Science ®Google Scholar
• Stamatakis A, Hoover P, Rougemont J. 2008. A rapid bootstrap algorithm for the RAxML web servers. Syst Biol. 57:758–771.10.1080/10635150802429642
   PubMed Web of Science ®Google Scholar
• Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 123:585–595.
   PubMed Web of Science ®Google Scholar
• Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731–2739.10.1093/molbev/msr121
   PubMed Web of Science ®Google Scholar
• Tsang LM, Chan BKK, Williams GA, Chu KH. 2013. Who is moving where? Molecular evidence reveals patterns of range shift in the acorn barnacle Hexechamaesipho pilsbryi in Asia. Mar Ecol Prog Ser. 488:187–200.10.3354/meps10385
   Web of Science ®Google Scholar
• Tsang LM, Wu TH, Shih HT, Williams GA, Chu KH, Chan BKK. 2012. Genetic and morphological differentiation of the Indo-West Pacific intertidal barnacle Chthamalus malayensis. Integr Comp Biol. 52:388–409.10.1093/icb/ics044
   PubMed Web of Science ®Google Scholar
• Van Syoc R. 1992. Living and fossil populations of a Western Atlantic barnacle, Balanus subalbidus Henry, 1974, in the Gulf of California region. Proc San Diego Soc Nat Hist. 12:1–7.
   Google Scholar
• Voris HK. 2000. Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durations. J Biogeogr. 27:1153–1167.10.1046/j.1365-2699.2000.00489.x
   Web of Science ®Google Scholar
• Wyatt ASJ, Hewitt CL, Walker DI, Ward TJ. 2005. Marine introductions in the Shark Bay World Heritage Property, Western Australia: a preliminary assessment. Divers Distrib. 11:33–44.10.1111/ddi.2005.11.issue-1
   Web of Science ®Google Scholar
• Zhan A, Macisaac HJ, Cristescu ME. 2010. Invasion genetics of the Ciona intestinalis species complex: from regional endemism to global homogeneity. Mol Ecol. 19:4678–4694.10.1111/mec.2010.19.issue-21
   PubMed Web of Science ®Google Scholar
• Zhang Y-F, Wang G-C, Ying X, Sougrat R, Qian P-Y. 2011. The effect of butenolide on behavioral and morphological changes in two marine fouling species, the barnacle Balanus amphitrite and the bryozoan Bugula neritina. Biofouling. 27:467–475.10.1080/08927014.2011.583985
   PubMed Web of Science ®Google Scholar