References
- Ahmed S, Seraji MT, Jahedi J, Hashib MA. 2012. Application of CFD for simulation of a baffled tubular membrane. Chem Eng Res Des. 90:600–608. doi:https://doi.org/10.1016/j.cherd.2011.08.024
- APHA A, WPCF. 1989. In: Clesceri LS, Greenberg AE, Trussel RR, editors. Standard methods for the examination of water and wastewater. 17th ed. Washington, D.C.: American PublicHealth Association.
- Benaissa K, Angel PVM, Dlolores RCM, Philippe D, Abdellatif K, Mohammed B, Larbi EB. 2012. Predicting initial erosion during the hole erosion test by using turbulent flow CFD simulation. App Math Model. 36:3359–3370. doi:https://doi.org/10.1016/j.apm.2011.04.036
- Boles BR, Thoendel M, Singh PK. 2004. Self-generated diversity produces “insurance effects” in biofilm communities. Proc Natl Acad Sci USA. 101:16630–16635. doi:https://doi.org/10.1073/pnas.0407460101
- Borges A, Ferreira C, Saavedra MJ, Simões M. 2013. Antibacterial activity and mode of action of ferulic and gallic acids against pathogenic bacteria. Microb Drug Resist. 19:256–265. doi:https://doi.org/10.1089/mdr.2012.0244
- Busscher HJ, van der Mei HC. 2006. Microbial adhesion in flow displacement systems. Clin Microbiol Rev. 19:127–141. doi:https://doi.org/10.1128/CMR.19.1.127-141.2006
- DuBois M, Gilles KA, Hamilton JK, Rebers PA, Smith F. 1956. Colorimetric method for determination of sugars and related substances. Anal Chem. 28:350–356. doi:https://doi.org/10.1021/ac60111a017
- Fanesi A, Lavayssière M, Breton C, Bernard O, Briandet R, Lopes F. 2021. Shear stress affects the architecture and cohesion of Chlorella vulgaris biofilms. Sci Rep. 11:4002. doi:https://doi.org/10.1038/s41598-021-83523-3
- Fernandes S, Gomes IB, Simões LC, Simões M. 2021. Overview on the hydrodynamic conditions found in industrial systems and its impact in (bio)fouling formation. Chem Eng J. 418:129348. doi:https://doi.org/10.1016/j.cej.2021.129348
- Fernandes S, Gomes IB, Simões M. 2020. Antimicrobial activity of glycolic acid and glyoxal against Bacillus cereus and Pseudomonas fluorescens. Food Res Int. 136:109346. doi:https://doi.org/10.1016/j.foodres.2020.109346
- Ferreira C, Rosmaninho R, Simoes M, Pereira MC, Bastos MM, Nunes OC, Coelho M, Melo LF. 2010. Biofouling control using microparticles carrying a biocide. Biofouling. 26:205–212. doi:https://doi.org/10.1080/08927010903419630
- Frølund B, Palmgren R, Keiding K, Nielsen PH. 1996. Extraction of extracellular polymers from activated sludge using a cation exchange resin. Water Res. 30:1749–1758. doi:https://doi.org/10.1016/0043-1354(95)00323-1
- Gomes IB, Lemos M, Fernandes S, Borges A, Simões LC, Simões M. 2021. The effects of chemical and mechanical stresses on Bacillus cereus and Pseudomonas fluorescens single- and dual-species biofilm removal. Microorganisms. 9:1174. doi:https://doi.org/10.3390/microorganisms9061174
- Gomes IB, Lemos M, Mathieu L, Simões M, Simões LC. 2018a. The action of chemical and mechanical stresses on single and dual species biofilm removal of drinking water bacteria. Sci Total Environ. 631–632:987–993. doi:https://doi.org/10.1016/j.scitotenv.2018.03.042
- Gomes IB, Meireles A, Gonçalves AL, Goeres DM, Sjollema J, Simões LC, Simões M. 2018b. Standardized reactors for the study of medical biofilms: a review of the principles and latest modifications. Crit Rev Biotechnol. 38:657–670. doi:https://doi.org/10.1080/07388551.2017.1380601
- Gomes IB, Simões M, Simões LC. 2014. An overview on the reactors to study drinking water biofilms. Water Res. 62:63–87. doi:https://doi.org/10.1016/j.watres.2014.05.039
- Horn H, Reiff H, Morgenroth E. 2003. Simulation of growth and detachment in biofilm systems under defined hydrodynamic conditions. Biotechnol Bioeng. 81:607–617. doi:https://doi.org/10.1002/bit.10503
- Jones AAD, Buie CR. 2019. Continuous shear stress alters metabolism, mass-transport, and growth in electroactive biofilms independent of surface substrate transport. Sci Rep. 9:2602. doi:https://doi.org/10.1038/s41598-019-39267-2
- Kirisits MJ, Margolis JJ, Purevdorj-Gage BL, Vaughan B, Chopp DL, Stoodley P, Parsek MR. 2007. Influence of the hydrodynamic environment on quorum sensing in Pseudomonas aeruginosa biofilms. J Bacteriol. 189:8357–8360. doi:https://doi.org/10.1128/JB.01040-07
- Krsmanovic M, Biswas D, Ali H, Kumar A, Ghosh R, Dickerson AK. 2021. Hydrodynamics and surface properties influence biofilm proliferation. Adv Colloid Interface Sci. 288:102336. doi:https://doi.org/10.1016/j.cis.2020.102336
- Lange H, Taillandier P, Riba J-P. 2001. Effect of high shear stress on microbial viability. J Chem Technol Biotechnol. 76:501–505. doi:https://doi.org/10.1002/jctb.401
- Lemos M, Mergulhão F, Melo L, Simões M. 2015. The effect of shear stress on the formation and removal of Bacillus cereus biofilms. Food Bioprod Process. 93:242–248. doi:https://doi.org/10.1016/j.fbp.2014.09.005
- León Ohl A, Horn H, Hempel DC. 2004. Behaviour of biofilm systems under varying hydrodynamic conditions. Water Sci Technol. 49:345–351. doi:https://doi.org/10.2166/wst.2004.0877
- Lewis K. 2010. Persister cells. Annu Rev Microbiol. 64:357–372. doi:https://doi.org/10.1146/annurev.micro.112408.134306
- Li G, Tang L, Zhang X, Dong J. 2019. A review of factors affecting the efficiency of clean-in-place procedures in closed processing systems. Energy. 178:57–71. doi:https://doi.org/10.1016/j.energy.2019.04.123
- Lieleg O, Caldara M, Baumgärtel R, Ribbeck K. 2011. Mechanical robustness of Pseudomonas aeruginosa biofilms. Soft Matter. 7:3307–3314. doi:https://doi.org/10.1039/c0sm01467b
- Lin Q, Lim JYC, Xue K, Yew PYM, Owh C, Chee PL, Loh XJ. 2020. Sanitizing agents for virus inactivation and disinfection. VIEW. 1:e16. doi:https://doi.org/10.1002/viw2.16
- Liu Y, Tay J-H. 2002. The essential role of hydrodynamic shear force in the formation of biofilm and granular sludge. Water Res. 36:1653–1665. doi:https://doi.org/10.1016/S0043-1354(01)00379-7
- Lowry OH, Rosebrough NJ, Farr AL, Randall RJ. 1951. Protein measurement with the Folin phenol reagent. J Biol Chem. 193:265–275. doi:https://doi.org/10.1016/S0021-9258(19)52451-6
- McDonnell G, Russell AD. 1999. Antiseptics and disinfectants: activity, action, and resistance. Clin Microbiol Rev. 12:147–179. doi:https://doi.org/10.1128/CMR.12.1.147
- Meireles A, Faia S, Giaouris E, Simões M. 2018. Antimicrobial susceptibility and sessile behaviour of bacteria isolated from a minimally processed vegetables plant. Biofouling. 34:1150–1160. doi:https://doi.org/10.1080/08927014.2018.1554742
- mEN-1276. 2009. Chemical disinfectants and antiseptics quantitative suspension test for the evaluation of bactericidal activity of chemical disinfectants and antiseptics used in food, industrial, domestic, and institutional areas – Test method and requirements (phase 2, step 1).
- Ochoa J-C, Coufort C, Escudié R, Liné A, Paul E. 2007. Influence of non-uniform distribution of shear stress on aerobic biofilms. Chem Eng Sci. 62:3672–3684. doi:https://doi.org/10.1016/j.ces.2007.03.023
- Paul E, Ochoa JC, Pechaud Y, Liu Y, Liné A. 2012. Effect of shear stress and growth conditions on detachment and physical properties of biofilms. Water Res. 46:5499–5508. doi:https://doi.org/10.1016/j.watres.2012.07.029
- Pereira MO, Kuehn M, Wuertz S, Neu T, Melo LF. 2002. Effect of flow regime on the architecture of a Pseudomonas fluorescens biofilm. Biotechnol Bioeng. 78:164–171. doi:https://doi.org/10.1002/bit.10189
- Peterson GL. 1979. Review of the Folin phenol protein quantitation method of Lowry, Rosebrough, Farr and Randall. Anal Biochem. 100:201–220. doi:https://doi.org/10.1016/0003-2697(79)90222-7
- Picioreanu C, Vrouwenvelder JS, van Loosdrecht MCM. 2009. Three-dimensional modeling of biofouling and fluid dynamics in feed spacer channels of membrane devices. J Membr Sci. 345:340–354. doi:https://doi.org/10.1016/j.memsci.2009.09.024
- Risse-Buhl U, Anlanger C, Kalla K, Neu TR, Noss C, Lorke A, Weitere M. 2017. The role of hydrodynamics in shaping the composition and architecture of epilithic biofilms in fluvial ecosystems. Water Res. 127:211–222. doi:https://doi.org/10.1016/j.watres.2017.09.054
- Rochex A, Godon JJ, Bernet N, Escudié R. 2008. Role of shear stress on composition, diversity and dynamics of biofilm bacterial communities. Water Res. 42:4915–4922. doi:https://doi.org/10.1016/j.watres.2008.09.015
- Rodesney CA, Roman B, Dhamani N, Cooley BJ, Katira P, Touhami A, Gordon VD. 2017. Mechanosensing of shear by Pseudomonas aeruginosa leads to increased levels of the cyclic-di-GMP signal initiating biofilm development. Proc Natl Acad Sci USA. 114:5906–5911. doi:https://doi.org/10.1073/pnas.1703255114
- Sanchez-Vizuete P, Orgaz B, Aymerich S, Le Coq D, Briandet R. 2015. Pathogens protection against the action of disinfectants in multispecies biofilms. Front Microbiol. 6:705. doi:https://doi.org/10.3389/fmicb.2015.00705
- Saur T, Morin E, Habouzit F, Bernet N, Escudié R. 2017. Impact of wall shear stress on initial bacterial adhesion in rotating annular reactor. PloS One. 12:e0172113. doi:https://doi.org/10.1371/journal.pone.0172113
- Simões LC, Lemos M, Pereira AM, Abreu AC, Saavedra MJ, Simões M. 2011. Persister cells in a biofilm treated with a biocide. Biofouling. 27:403–411. doi:https://doi.org/10.1080/08927014.2011.579599
- Simões LC, Simões M. 2013. Biofilms in drinking water: problems and solutions. RSC Adv. 3:2520–2533. doi:https://doi.org/10.1039/C2RA22243D
- Simões M, Pereira MO, Sillankorva S, Azeredo J, Vieira MJ. 2007. The effect of hydrodynamic conditions on the phenotype of Pseudomonas fluorescens biofilms. Biofouling. 23:249–258. doi:https://doi.org/10.1080/08927010701368476
- Simões M, Pereira MO, Vieira MJ. 2005. Effect of mechanical stress on biofilms challenged by different chemicals. Water Res. 39:5142–5152. doi:https://doi.org/10.1016/j.watres.2005.09.028
- Simões M, Simões LC, Vieira MJ. 2008. Physiology and behavior of Pseudomonas fluorescens single and dual strain biofilms under diverse hydrodynamics stresses. Int J Food Microbiol. 128:309–316. doi:https://doi.org/10.1016/j.ijfoodmicro.2008.09.003
- Simões M, Simões LC, Vieira MJ. 2009. Species association increases biofilm resistance to chemical and mechanical treatments. Water Res. 43:229–237. doi:https://doi.org/10.1016/j.watres.2008.10.010
- Simões M, Simões LC, Vieira MJ. 2010. A review of current and emergent biofilm control strategies. LWT – Food Sci Technol. 43:573–583. doi:https://doi.org/10.1016/j.lwt.2009.12.008
- Stewart PS. 2012. Mini-review: convection around biofilms. Biofouling. 28:187–198. doi:https://doi.org/10.1080/08927014.2012.662641
- Stoodley P, Cargo R, Rupp CJ, Wilson S, Klapper I. 2002. Biofilm material properties as related to shear-induced deformation and detachment phenomena. J Ind Microbiol Biotechnol. 29:361–367. doi:https://doi.org/10.1038/sj.jim.7000282
- Stoodley P, Dodds I, Boyle JD, Lappin-Scott HM. 1998. Influence of hydrodynamics and nutrients on biofilm structure. J Appl Microbiol. 85:19S–28S. doi:https://doi.org/10.1111/j.1365-2672.1998.tb05279.x
- Zeng F, Huang J, Meng C, Zhu F, Chen J, Li Y. 2016. Investigation on novel raceway pond with inclined paddle wheels through simulation and microalgae culture experiments. Bioprocess Biosyst Eng. 39:169–180. doi:https://doi.org/10.1007/s00449-015-1501-9