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Original Articles

Chemically driven electron tunnelling pumps

Pages 717-725 | Received 01 Apr 2006, Accepted 01 May 2006, Published online: 31 Jan 2007

References

  • Mitchell , P. 1961 . Coupling of phosphorylation to electrons and hydrogen transfer by a chemiosmotic type of mechanism . Nature (London) , 191 : 144
  • Mitchell , P. and Moyle , J. 1965 . Evidence discriminating between the chemical and chemiosmotic mechanisms of electron transfer phosphorylation . Nature (London) , 208 : 1205
  • Alberts , B. , Johnson , J. , Lewis , J. , Raff , M. , Roberts , K. and Walter , P. 2002 . Molecular Biology of the Cell , 4th ed. , New York : Garland Science .
  • Nossal , R.J. and Lecar , H. 1991 . Molecular and Cell Biophysics , Redwood City : Addison-Wesley .
  • Nelson , P. 2004 . Biological Physics: Energy, Information, Life , New York : Freeman & Co. .
  • Chance , B. and Hollunder , G. 1961 . The interaction of energy and electron transfer reactions in mitochondria. IV. The pathway of electron transfer . J. Biol. Chem. , 236 : 1562 (see Note Added in Proof).
  • Miki , T. , Miki , M. and Orii , Y. 1994 . Membrane potential-linked reversed electron transfer in the beef heart cytochrome complex reconstituted into potassium-loaded phospholipid vesicles . J. Biol. Chem. , 269 : 1827
  • Elbenti , A. , Brasseur , G. and Lemesle-Meunier , D. 2000 . First evidence for existence of an uphill electron transfer through the and NADH-Q oxidoreductase complexes of the acidophilic obligate chemolithotropic ferrous ion-oxidizing bacterium Thiobacillus ferrooxidans . J. Bacteriol. , 182 : 3602
  • Gemperli , A.C. , Dimroth , P. and Steuber , J. 2003 . Sodium ion cycling mediates energy coupling between complex I and ATP synthase . Proc. Natl. Acad. Sci. USA , 100 : 839
  • Osyczka , A. , Moser , C.C. , Daldal , F. and Dutton , L. 2004 . Reversible redox energy coupling in electron transfer chains . Nature (London) , 427 : 607
  • Lanzillota , W.N. , Parker , V.D. and Seefeldt , L.C. 1998 . Electron transfer in nitrogenase analyzed by Marcus theory: evidence for gating by MgATP . Biochemistry , 37 : 399
  • Rees , D.C. and Howard , J.B. 2000 . Nitrogenase: standing at the crossroads . Curr. Opin. Chem. Biol. , 4 : 559
  • Davidson , V.L. 2002 . Chemically gated electron transfer: a means for accelerating and regulating rates of biological electron transfer . Biochemistry , 41 : 14633
  • Kurnikov , I.V. , Charnley , A.K. and Beratan , D.N. 2001 . From ATP to electron transfer: electrostatics and free-energy transduction in nitrogenase . J. Phys. Chem. B , 105 : 5359
  • Goychuk , I.A. , Petrov , E.G. and May , V. 1995 . Bridge-assisted electron transfer driven by dichotomically fluctuating tunneling coupling . J. Chem. Phys. , 103 : 4937
  • Goychuk , I.A. , Petrov , E.G. and May , V. 1995 . Dynamics of the dissipative two-level system driven by external telegraph noise . Phys. Rev. E , 52 : 2392
  • Goychuk , I.A. , Petrov , E.G. and May , V. 1997 . Control of long-range electron transfer in dynamically disordered molecular systems by an external periodic field . J. Chem. Phys. , 106 : 4522
  • Goychuk , I.A. , Petrov , E.G. and May , V. 1997 . Combined influence of random and regular external fields on long-range electron transfer . Phys. Rev. E , 56 : 1421
  • Garg , A. , Onuchic , J.N. and Ambegaokar , V. 1985 . Effect of friction on electron-transfer in biomolecules . J. Chem. Phys. , 83 : 4491
  • Onuchic , J.N. , Beratan , D.N. and Hopfield , J.J. 1986 . Some aspects of electron-transfer reaction dynamics . J. Phys. Chem. , 90 : 3707
  • Schulten , K. and Tesch , M. 1991 . Coupling of protein motion to electron-transfer-molecular-dynamics and stochastic quantum-mechanics study of photosynthetic reaction centers . Chem. Phys. , 158 : 421
  • Leggett , A.J. , Chakravarty , S. , Dorsey , A. , Fisher , M.P.A. , Garg , A. and Zwerger , W. 1987 . Dynamics of the dissipative two-state system . Rev. Mod. Phys. , 59 : 1
  • May , V. and Kühn , O. 2004 . Charge and Energy Transfer Dynamics in Molecular Systems: A Theoretical Introduction , 2nd ed. , Weinheim : Wiley-VCH .
  • Petrov , E.G. 1984 . Physics of Charge Transfer in Biosystems , Kiev : Naukova Dumka . (in Russian)
  • Goychuk , I. and Hänggi , P. 2005 . Quantum dynamics in strong fluctuating fields . Adv. Phys. , 54 : 525
  • McConnell , H.M. 1961 . Intramolecular charge transfer in aromatic free radicals . J. Chem. Phys. , 35 : 508
  • Kharkyanen , V.N. , Petrov , E.G. and Ukrainskii , I.I. 1978 . Donor-acceptor model of electron transfer through proteins . J. Theor. Biol. , 73 : 29
  • Beratan , D.N. , Onuchic , J.N. and Hopfield , J.J. 1987 . Electron tunneling through covalent and noncovalent pathways in proteins . J. Chem. Phys. , 86 : 4488
  • Skourtis , S.S. and Beratan , D.N. 1999 . Theories of structure-function relationships for bridge-mediated electron transfer . Adv. Chem. Phys. , 106 : 377
  • Gray , H.B. and Winkler , J.R. 2005 . Long-range electron transfer . Proc. Natl. Acad. Sci. USA , 102 : 3534
  • Marcus , R.A. 1956 . On the theory of oxidation-reduction reactions involving electron transfer I . J. Chem. Phys. , 24 : 966
  • Levich , V.G. and Dogonadze , R.R. 1959 . Theory of non-radiative electronic transitions between ions in solution . Dokl. Acad. Nauk SSSR , 124 : 123 (in Russian) [Proc. Acad. Sci. Phys. Chem. Sect., 124, 9 (1959)].
  • Ulstrup , J. and Jortner , J. 1975 . The effect of intramolecular quantum modes on free energy relationships for electron transfer reactions . J. Chem. Phys. , 63 : 4358
  • Bixon , M. and Jortner , J. 1999 . Electron transfer—from isolated molecules to biomolecules . Adv. Chem. Phys. , 106 : 35
  • Monod , J. , Wyman , J. and Changeux , J.P. 1965 . On the nature of allosteric transitions: a plausible model . J. Mol. Biol. , 12 : 88
  • Keener , J. and Sneyd , J. 2001 . Mathematical Physiology , New York : Springer .
  • Changeux , J.P. and Edelstein , S.J. 2005 . Allosteric mechanisms of signal transduction . Science , 308 : 1424
  • Tsong , T.Y. and Astumian , R.D. 1987 . Electroconformational coupling and membrane protein function . Prog. Biophys. Mol. Biol. , 50 : 1
  • Lockhart , D.J. , Kirmaier , C. , Holten , D. and Boxer , S.G. 1990 . Electric-field effects on the initial electron-transfer kinetics in bacterial photosynthetic reaction centers . J. Phys. Chem. , 94 : 6987
  • Bixon , M. and Jortner , J. 1988 . Electric field effects on the primary charge separation in bacterial photosynthesis . J. Phys. Chem. , 92 : 7148
  • Serpersu , E.H. and Tsong , T.Y. 1984 . Activation of electrogenic transport of (Na,K)-ATPase by an electric field . J. Biol. Chem. , 259 : 7155
  • Tsong , T.Y. and Xie , T.D. 2002 . Ion pumps as molecular ratchet and effects of noise: electric activation of cation pumping by Na,K-ATPase . Appl. Phys. A , 75 : 345
  • Astumian , R.D. , Chock , P.B. , Tsong , T.Y. , Chen , Y.D. and Westerhoff , H.V. 1987 . Can free energy be transduced from electric noise? . Proc. Natl. Acad. Sci. USA , 84 : 434
  • Zwanzig , R. 1990 . Rate processes with dynamical disorder . Acc. Chem. Res. , 23 : 148
  • van Kampen , N.G. 1992 . Stochastic Processes in Physics and Chemistry , 2nd ed. , Amsterdam : North-Holland .
  • Hoffman , B.M. and Ratner , M.A. 1987 . Gated electron transfer: when are observed rates controlled by conformational interconversion? . J. Am. Chem. Soc. , 109 : 6237
  • Gehlen , J.H. , Marchi , M. and Chandler , D. 1994 . Dynamics affecting the primary charge-transfer in photosynthesis . Science , 263 : 499
  • van Kampen , N.G. 1979 . Composite stochastic processes . Physica A , 96 : 435
  • Goychuk , I. 2004 . Quantum dynamics with non-Markovian fluctuating parameters . Phys. Rev. E , 70 : 016109
  • Goychuk , I. 2005 . Rate processes with non-Markovian dynamical disorder . J. Chem. Phys. , 122 : 164506
  • Hill , T.L. and Chen , Y.D. 1975 . Stochastics of cycle completions (fluxes) in biochemical kinetic diagrams . Proc. Natl. Acad. Sci. USA , 72 : 1291
  • Hill , T.L. and Simmons , R.M. 1976 . Free energy levels and entropy production associated with biochemical kinetic diagrams . Proc. Natl. Acad. Sci. USA , 73 : 95
  • Hill , T.L. 1983 . Derivation of the relation between the linear Onsager coefficients and the equilibrium one-way cycle fluxes of a biochemical kinetic diagrams . Proc. Natl. Acad. Sci. USA , 80 : 2589
  • Westerhoff , H.V. and Chen , Y.D. 1985 . Stochastic free energy transduction . Proc. Natl. Acad. Sci. USA , 82 : 3222
  • Qian , H. 2005 . Cycle kinetics, steady state thermodynamics and motors—a paradigm for living matter physics . J. Phys. Condens. Matter , 17 : S3783
  • Min , W. , Jiang , L. , Yu , J. , Qian , H. and Xie , X.S. 2005 . Nonequilibrium steady state of a nanometric biochemical system: determining the thermodynamical driving force from single enzyme turnover time traces . Nanoletters , 5 : 2373
  • Astumian , R.D and Hänggi , P. 2002 . Brownian motors . Physics Today , 55 : 33

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