363
Views
17
CrossRef citations to date
0
Altmetric
ARTICLE

Colorimetric Method of Loop-Mediated Isothermal Amplification with the Pre-Addition of Calcein for Detecting Flavobacterium columnare and its Assessment in Tilapia Farms

, , , , &
Pages 38-44 | Received 21 May 2014, Accepted 10 Aug 2014, Published online: 13 Jan 2015

REFERENCES

  • Austin, B., and D.A. Austin. 2007. Bacterial fish pathogens: diseases of farmed and wild fish. Springer-Praxis, Chichester, UK.
  • Avendaño-Herrera, R., V. Gherardelli, P. Olmos, M.G. Godoy, A. Heisinger, and J. Fernandez. 2011. Flavobacterium columnare associated with mortality of salmonids farmed in Chile: a case report of two outbreaks. Bulletin of the European Association of Fish Pathologists 31:36–44.
  • Bader, J.A., C.A. Shoemaker, and P.H. Klesius. 2003. Rapid detection of columnaris disease in Channel Catfish (Ictalurus punctatus) with a new species-specific 16-S rRNA gene-based PCR primer for Flavobacterium columnare. Journal of Microbiology Methods 52:209–220.
  • Barker, G.A., S.N. Smith, and N.R. Bromage. 1989. The bacterial flora of Rainbow Trout, Salmo gairdneri Richardson, and Brown Trout, Salmo trutta L., eggs and its relationship to developmental success. Journal of Fish Diseases 12:281–293.
  • Brown, L.L., W.T. Cox, and R.P. Levine. 1997. Evidence that the causal agent of bacterial cold-water disease Flavobacterium psychrophilum is transmitted within salmonid eggs. Diseases of Aquatic Organisms 29:213–218.
  • Darwish, A.M., A.A. Ismaiel, J.C. Newton, and J. Tang. 2004. Identification of Flavobacterium columnare by a species-specific polymerase chain reaction and renaming of ATCC 43622 strain to Flavobacterium johnsoniae. Molecular and Cell Probes 18:421–427.
  • Durborow, R.M., R.L. Thune, J.P. Hawke, and A.C. Camus. 1998. Columnaris disease: a bacterial infection caused by Flavobacterium columnare. Southern Regional Aquaculture Center, Publication 479, Stoneville, Mississippi.
  • Ekman, E., H. Borjeson, and N. Johansson. 1999. Flavobacterium psychrophilum in Baltic salmon Salmo salar brood fish and their offspring. Disease of Aquatic Organisms 37:159–163.
  • Figueiredo, H.C. P., P.H. Klesius, C.R. Arias, J. Evans, C.A. Shoemaker, D.J. Pereira, and M.T. D. Peixoto. 2005. Isolation and characterization of strains of Flavobacterium columnare from Brazil. Journal of Fish Diseases 28:199–204.
  • Groff, J.M., and S.E. LaPatra. 2000. Infectious diseases impacting the commercial culture of salmonids. Journal of Applied Aquaculture 10:17–90.
  • Holt, R.A. 1987. Cytophaga psychrophila, the causative agent of bacterial cold-water disease in salmonid fish. Doctoral dissertation. Oregon State University, Corvallis.
  • Holt, R.A., J.S. Rohovec, and J.L. Fryer. 1993. Bacterial cold-water disease. Pages 3–23 in V. Inglis, R.J. Roberts, and N.R. Bromage, editors. Bacterial diseases of fish. Blackwell Scientific Publications, Oxford, UK.
  • Jaroenram, W., W. Kiatpathomchai, and T.W. Flegel. 2009. Rapid and sensitive detection of white spot syndrome virus by loop-mediated isothermal amplification combined with a lateral flow dipstick. Molecular and Cellular Probes 23:65–70.
  • Kaneko, H., T. Kawana, E. Fukushima, and T. Suzutani. 2007. Tolerance of loop-mediated isothermal amplification to a culture medium and biological substances. Journal of Biochemical and Biophysical Methods 70:499–501.
  • Kiatpathomchai, W., V. Boonsaeng, A. Tassanakajon, C. Wongteerasupaya, S. Jitrapakdee, and S. Panyim. 2001. A non-stop, single-tune, semi-nested PCR technique for grading the severity of white spot syndrome virus infections in Penaeus monodon. Diseases of Aquatic Organisms 47:235–239.
  • Mori, Y., K. Nagamine, N. Tomita, and T. Notomi. 2001. Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Biochemical and Biophysical Research Communications 289:150–154.
  • Morrison, C., J. Cornick, G. Shuma, and B. Zwicker. 1981. Microbiology and histopathology of “saddleback” disease of underyearling Atlantic Salmon, Salmo salar L. Journal of Fish Diseases 4:243–258.
  • Newton, J.C., T.M. Wood, and M.M. Hartley. 1997. Isolation and partial characterization of extracellular proteases produced by isolates of F. columnare derived from Channel Catfish. Journal of Aquatic Animal Health 9:75–85.
  • Panangala, V.S., C.A. Shoemaker, and P.H. Klesius. 2007. TaqMan real-time polymerase chain reaction assay for rapid detection of Flavobacterium columnare. Aquaculture Research 38:508–517.
  • Rangdale, R.E., R.E. Richards, and D.J. Alderman. 1996. Isolation of Cytophaga psychrophila, causal agent of Rainbow Trout fry syndrome (RTFS), from reproductive fluids and egg surfaces of Rainbow Trout (Oncorhynchus mykiss). Bulletin of the European Association of Fish Pathologists 16:63–67.
  • Shoemaker, C.A., C.R. Arias, P.H. Klesius, and T.L. Welker. 2005. Technique for identifying Flavobacterium columnare using whole-cell fatty acid profiles. Journal of Aquatic Animal Health 17:267–274.
  • Stringer-Roth, K.M., W. Yunghans, and L.F. Caslake. 2002. Differences in chondroitin AC lyase activity of Flavobacterium columnare isolates. Journal of Fish Diseases 25:687–691.
  • Suebsing, R., J. Kampera, B. Tookdee, B. Withyachumnarnkul, W. Turner, and W. Kiatpathomchai. 2013. Evaluation of colorimetric loop-mediated isothermal amplification assay for visual detection of Streptococcus agalactiae and Streptococcus iniae in tilapia. Letters in Applied Microbiology 57:317–324.
  • Suomalainen, L.R., M. Tiirola, and E.T. Valtonen. 2006. Chondroitin AC lyase activity is related to virulence of fish pathogenic Flavobacterium columnare. Journal of Fish Diseases 29:757–763.
  • Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24:1596–1599.
  • Tomita, N., Y. Mori, H. Kanda, and T. Notomi. 2008. Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products. Nature Protocol 3:877–882.
  • Wastling, S. L., K. Picozzi, A. S. L. Kakembo, and S. C. Welburn. 2010. LAMP for human African trypanosomiasis: a comparative study of detection formats. PLoS Neglected Tropical Diseases [online serial] 4(11):e865.
  • Welker, T.L., C.A. Shoemaker, C.R. Arias, and P.H. Klesius. 2005. Transmission and detection of Flavobacterium columnare in Channel Catfish Ictalurus punctatus. Diseases of Aquatic Organisms 63:129–138.
  • Xie, H.X., P. Nie, M.X. Chang, Y. Liu, and W.J. Yao. 2005. Gene cloning and functional analysis of glycosaminoglycan-degrading enzyme chondroitin AC lyase from Flavobacterium columnare G4. Archives of Microbiology 184:49–55.
  • Yeh, H.Y., C.A. Shoemaker, and P.H. Klesius. 2006. Sensitive and rapid detection of Flavobacterium columnare in Channel Catfish Ictalurus punctatus by a loop-mediated isothermal amplification method. Journal of Applied Microbiology 100:919–925.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.