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Original Articles

Microbial activity and metabolic quotient of microbes in soils amended with biochar and contaminated with atrazine and paraquat

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Pages 492-509 | Received 18 Jul 2016, Accepted 24 Feb 2017, Published online: 10 Apr 2017

References

  • Anderson CR, Condron LM, Clough TJ, Fiers M, Stewart A, Hill RA, Sherlock RR. 2011. Biochar induced soil microbial community change: implications for biogeochemical cycling of carbon, nitrogen and phosphorus. Pedobiologia. 54:309–320. doi: 10.1016/j.pedobi.2011.07.005
  • Anderson JM, Ingram JSI, editors. 1993. Tropical soil biology and fertility: a handbook of methods. 2nd ed. Wallingford: CAB International. 238 pp.
  • Anderson TH, Domsch KH. 1990. Application of eco-physiological quotients (qCO2 and qD) on microbial biomass from soils of different cropping histories. Soil Biol Biochem. 22:251–255. doi: 10.1016/0038-0717(90)90094-G
  • Atkinson CJ, Fitzgerald JD, Hipps NA. 2010. Potential mechanisms for achieving agricultural benefits from biochar application to temperature soils: a review. Plant Soil. 337:1–18. doi: 10.1007/s11104-010-0464-5
  • Ball PN, MacKenzie MD, DeLuca TH, Holben WE. 2010. Wildfire and charcoal enhance nitrification and ammonium-oxidizing bacteria abundance in dry montane forest soils. J Environ Qual. 39:1243–1253. doi: 10.2134/jeq2009.0082
  • Berglund L, DeLuca T, Zackrisson O. 2004. Activated carbon amendments to soil alters nitrification rates in Scots pine forests. Soil Biol Biochem. 36:2067–2073. doi: 10.1016/j.soilbio.2004.06.005
  • Blake GR, Hartge KH. 1965. Bulk density. In: Klute A, editor. Methods of soil analysis, part 1 – physical and mineralogical methods. 2nd ed. Agronomy Monograph 9. Madison, WI: American Society of Agronomy – Soil Science Society of America; p. 363–382.
  • Bollag JM, Liu SY. 1990. Biological transformation processes of pesticides. In: Cheng HH, editor. Pesticides in the soil environment: processes, impacts and modelling. Madison, WI: SSSA; p. 169–211.
  • Bray RH, Kurtz LT. 1945. Determination of total organic and available forms of phosphorus in soils. Soil Sci. 59:39–46. doi: 10.1097/00010694-194501000-00006
  • Bremner JM. 1965. Total nitrogen. In: Black C, editor. Methods of soil analysis, part 2. Monograph No. 9. Madison, WI: America Society of Agronomy; p. 1149–1178.
  • Bruun EW, Ambus P, Egsgaard H, Hauggaard-Nielsen H. 2012. Effects of slow and fast pyrolysis biochar on soil C and N turnover dynamics. Soil Biol Biochem. 46:73–79. doi: 10.1016/j.soilbio.2011.11.019
  • Dance W, Peterson A, Chester G. 1973. Ammonification and nitrification of N as influenced by soil pH and previous N treatments. Soil Sci Soc Am J. 37:67–69. doi: 10.2136/sssaj1973.03615995003700010024x
  • Day PR. 1965. Particle and particle size analysis. In: Black CA, editor. Methods of soil analysis, part I. Madison, WI: Agronomy; p. 545–567.
  • Deenik JL, McClellan T, Uehara G, Antal NJ, Campbell S. 2010. Charcoal volatile matter content influences plant growth and soil nitrogen transformations. Soil Sci Soc Am J. 74:1259–1270. doi: 10.2136/sssaj2009.0115
  • DeLuca T, Nilsson MC, Zackrisson O. 2002. Nitrogen mineralization and phenol accumulation along a fire chronosequence in northern Sweden. Oecologia. 133:206–214. doi: 10.1007/s00442-002-1025-2
  • Dempster DN, Jones DL, Murphy DV. 2012. Organic nitrogen mineralization in two contrasting agro-ecosystems is unchanged by biochar addition. Soil Biol Biochem. 48:47–50. doi: 10.1016/j.soilbio.2012.01.013
  • Dilly O, Zyakun A. 2008. Priming effect and respiratory quotient in a forest soil amended with glucose. Geomicrobiol J. 25:425–431. doi: 10.1080/01490450802403099
  • Domene X, Mattam S, Hanley K, Enders A, Lehmann J. 2014. Medium-term effects of corn biochar addition on soil biota activities and functions in a temperate soil cropped to corn. Soil Biol Biochem. 72:152–162. doi: 10.1016/j.soilbio.2014.01.035
  • Elliot ET, Anderson RV, Coleman DC, Cole CV. 1980. Habitable pore space and microbial trophic interactions. Oikos. 35:327–335. doi: 10.2307/3544648
  • Fang M, Motavalli P, Kremer R, Nelson K. 2007. Assessing changes in soil microbial communities and carbon mineralization in Bt and non-Bt corn residue-amended soils. Appl Soil Ecol. 37(1–2):150–160. doi: 10.1016/j.apsoil.2007.06.001
  • Girvan MS, Bullimore J, Pretty JN, Osborn AM, Ball AS. 2003. Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Appl Environ Microbiol. 69(3):1800–1809. doi: 10.1128/AEM.69.3.1800-1809.2003
  • Gundale MJ, DeLuca TH. 2006. Temperature and substrate influence the chemical properties of charcoal in the ponderosa pine/douglas-fir ecosystem. For Ecol Manag. 231:86–93. doi: 10.1016/j.foreco.2006.05.004
  • Haefele SM, Knoblauch C, Gummert M, Konboon Y, Koyama S. 2009. Black carbon (biochar) in rice-based systems: characteristics and opportunities. In: Woods WI, Teixeira WG, Lehmann J, Steiner C, WinklerPrins AMGA, Rebellato L, editors. Amazonian dark earths: Wim Sombroek’s vision. Berlin: Springer; p. 445–463.
  • Hamer U, Marschner B. 2005. Priming effects in soils after combined and repeated substrate additions. Geoderma. 128:38–51. doi: 10.1016/j.geoderma.2004.12.014
  • Hamer U, Marschner B, Brodowski S, Amelung W. 2004. Interactive priming of black carbon and glucose mineralization. Org Geochem. 35:823–830. doi: 10.1016/j.orggeochem.2004.03.003
  • Hutchinson GL, Mosier AR. 1981. Improved soil cover method for field measurement of nitrous oxide fluxes. Soil Sci Soc Am J. 45:311–316. doi: 10.2136/sssaj1981.03615995004500020017x
  • Ippolito JA, Laird DA, Busscher WJ. 2012. Environmental benefits of biochar. J Environ Qual. 41:967–972. doi: 10.2134/jeq2012.0151
  • Jones JW, Koo J, Naab JB, Bostick WM, Traore S, Graham T. 2006. Integrating stochastic models and in situ sampling for monitoring soil carbon sequestration. Agric Syst. 94:52–62. doi: 10.1016/j.agsy.2005.06.023
  • Kimetu JM, Lehmann J. 2010. Stability and stabilization of biochar and green manure in soil with different organic carbon contents. Aust J Soil Res. 48:577–585. doi: 10.1071/SR10036
  • Kleber M, Eusterhues K, Keiluweit M, Mikutta C, Mikutta R, Nico PS. 2015. Mineral–organic associations: formation, properties, and relevance in soil environments. Adv Agron. 130:1–140. doi: 10.1016/bs.agron.2014.10.005
  • Kuzyakov Y, Subbotina I, Chen H, Bogomolova I, Xu X. 2009. Black carbon decomposition and incorporation into microbial biomass estimated by 14C labeling. Soil Biol Biochem. 41:210–219. doi: 10.1016/j.soilbio.2008.10.016
  • Ladd JN, Amato M. 1989. Relationship between microbial biomass carbon in soils and absorbance of extracts of fumigated soils. Soil Biol Biochem. 21:457–459. doi: 10.1016/0038-0717(89)90160-0
  • Lehmann J, da Silva Jr JP, Steiner C, Nehls T, Zech W, Glaser B. 2003. Nutrient availability and leaching in an archaeological anthrosol and a ferralsol of the central Amazon basin: fertilizer, manure and charcoal amendments. Plant Soil. 249:343–357. doi: 10.1023/A:1022833116184
  • Lehmann J, Joseph S. 2009. Biochar for environmental management: an introduction. In: Lehmann J, Joseph S, editors. Biochar for environmental management, science and technology. London: Earthscan; p. 1–12.
  • Liang B, Lehmann J, Solomon D, Kinyangi J, Grossman J, O’Neill B, Skjemstad JO, Thies J, Luizão FJ, Petersen J, Neves EG. 2006. Black carbon increases cation exchange capacity in soils. Soil Sci Soc Am J. 70:1719–1730. doi: 10.2136/sssaj2005.0383
  • Liang BQ, Lehmann J, Sohi SP, Thies JE, O’Neill B, Trujillo L, Gaunt J, Solomon D, Grossman J, Neves EG, Luizao FJ. 2010. Black carbon affects the cycling of nonblack carbon in soil. Org Geochem. 41:206–213. doi: 10.1016/j.orggeochem.2009.09.007
  • Luo Y, Durenkamp M, De Nobili M, Lin Q, Devonshire BJ, Brookes PC. 2013. Microbial biomass growth, following incorporation of biochars produced at 350°C or 700°C, in a silty-clay loam soil of high and low pH. Soil Biol Biochem. 57:513–523. doi: 10.1016/j.soilbio.2012.10.033
  • MacKenzie MD, DeLuca TH. 2006. Charcoal and shrubs modify soil processes in ponderosa pine forests of western Montana. Plant Soil. 287:257–266. doi: 10.1007/s11104-006-9074-7
  • Mašek O, Budarin V, Gronnow M, Crombie K, Brownsort P, Fitzpatrick E, Hurst P. 2013. Microwave and slow pyrolysis biochar – comparison of physical and functional properties. J Anal Appl Pyrol. 100:41–48. doi: 10.1016/j.jaap.2012.11.015
  • Mizuta K, Matsumoto T, Hatate Y, Nishiihara K, Nakanishi. 2004. Removal of nitrate-nitrogen from drinking water using bamboo powder charcoal. Bioresour Technol. 95: 255–257. doi: 10.1016/j.biortech.2004.02.015
  • Mohammad AO. 2015. Assessing changes in soil microbial populations with some soil physical and chemical properties. Int J Plant Animal Environ Sci. 5(3):117–123.
  • Murage EW, Voroney P, Beyaert RP. 2007. Turnover of carbon in the free light fraction with and without charcoal as determined using the 13C natural abundance method. Geoderma. 138:133–143. doi: 10.1016/j.geoderma.2006.11.002
  • Murphy J, Riley JP. 1962. A modified method single solution for determination of phosphate in natural water. Acta J Anal Chem. 27:31–36. doi: 10.1016/S0003-2670(00)88444-5
  • Nelissen V, Rutting T, Huygens D, Staelens J, Ruysschaert G, Boeckx P. 2012. Maize biochars accelerate short-term soil nitrogen dynamics in a loamy sand soil. Soil Biol Biochem. 55:20–27. doi:10.1016/j.soilbio.2012.05.019
  • Nguyen B, Lehmann J, Kinyangi J, Smernik R, Riha SJ, Engelhard MH. 2008. Long-term black carbon dynamics in cultivated soil. Biogeochemistry. 89:295–308. doi: 10.1007/s10533-008-9220-9
  • Olsen SR, Cole CV, Watanabe FS, Dean LA. 1954. Estimation of available phosphorus in soils by extraction with sodium bicarbonate. U.S.Department of Agriculture Circular 939.
  • Paul EA, Clark FE. 1996. Soil microbiology and biochemistry. 2nd ed. San Diego (CA): Academic Press. 340 pp.
  • Pell M, Stenström J, Granhall U. 2006. Soil respiration. In: Bloem J, Hopkins DW, Benedetti A, editors. Microbial methods for assessing soil quality. Wallingford: CABInternational; p. 114–126.
  • Perucci P, Dumontet S, Bufo SA, Mazzatura A, Casucci C. 2000. Effects of organic amendment and herbicide treatment on soil microbial biomass. Biol Fertil Soils. 32:17–23. doi: 10.1007/s003740000207
  • Pietikäinen J, Kiikkilä O, Fritze H. 2000. Charcoal as a habitat for microbes and its effects on the microbial community of the underlying humus. Oikos. 89:231–242. doi: 10.1034/j.1600-0706.2000.890203.x
  • Postma J, Veen JA. 1990. Habitable pore space and survival of Rhizobium leguminosarum biovar trifolii introduced into soil. Microbial Ecol. 19(2):149–161. doi: 10.1007/BF02012096
  • Singh B, Singh BP, Cowie AL. 2010. Characterisation and evaluation of biochars for their application as a soil amendment. Aust J Soil Res. 48:516–525. doi: 10.1071/SR10058
  • Sparling GP, Feltham CW, Reynolds J, West AW, Singleton P. 1990. Estimation of soil microbial carbon by fumigation – extraction method: use on soils of high organic matter content, and a reassessment of the kEC-factors. Soil Biol Biochem. 22:301–307. doi: 10.1016/0038-0717(90)90104-8
  • Sparling GP, West AW. 1998. A direct extraction method to estimate soil microbial carbon: calibration in situ using microbial respiration and 14C-labelled cells. Soil Biol Biochem. 20:337–343. doi: 10.1016/0038-0717(88)90014-4
  • Spokas KA, Koskinen WC, Baker JM, Reicosky DC. 2009. Impacts of woodchip biochar additions on greenhouse gas production and sorption/degradation of two herbicides in a Minnesota soil. Chemosphere. 77:574–581. doi: 10.1016/j.chemosphere.2009.06.053
  • Steinbeiss S, Gleixner G, Antonietti M. 2009. Effect of biochar amendment on soil carbon balance and soil microbial activity. Soil Biol Biochem. 41:1301–1310. doi: 10.1016/j.soilbio.2009.03.016
  • Steiner C, Garcia M, Zech W. 2009. Effects of charcoal as slow release nutrient carrier on NPK dynamics and soil microbial population: pot experiments with ferralsol substrate. In: Woods WI, Teixeira WG, Lehmann J, Steiner C, WinklerPrins AMGA, Rebellato L, editors. Amazonian dark earths: Wim Sombroek’s vision. Berlin: Springer; p. 325–338.
  • Sullivan BW, Dore S, Kolb TE, Hart SC, Montes-Helu C. 2010. Evaluation of methods for estimating carbon dioxide efflux across a gradient of forest disturbance. Global Clim Biol. 16:2449–2460.
  • Tucker BV, Pack DE, Ospenson JN. 1967. Adsorption of bipyridylium herbicides in soil. J Agric Food Chem. 15:1005–1008. doi: 10.1021/jf60154a017
  • Van Zwieten L, Kimber S, Morris S, Downie A, Berger E, Rust J, Scheer C. 2010. Influence of biochars on flux of N2O and CO2 from ferrosol. Aust J Soil Res. 48:555–568. doi: 10.1071/SR10004
  • Walkley A, Black IA. 1934. An examination of the degtjareff method for determining soil organic matter, and proposed modification of the chromic acid titration method. Soil Sci. 37:29–38. doi: 10.1097/00010694-193401000-00003
  • Wardle DA, Ghani A. 1995. A critique of the microbial metabolic quotient (qCO2) as a bioindicator of disturbance and ecosystem development. Soil Biol Biochem. 27:1601–1610. doi: 10.1016/0038-0717(95)00093-T
  • Warnock DD, Mummey DL, McBride B, Major J, Lehmann J, Rillig MC. 2010. Influences of non-herbaceous biochar on arbuscular mycorrhizal fungal abundances in roots and soils: results from growth-chamber and field experiments. Appl Soil Ecol. 46:450–456. doi: 10.1016/j.apsoil.2010.09.002
  • Winsley P. 2007. Biochar and bioenergy production for climate change mitigation. N Z Sci Rev. 64:5–10.
  • Yao Y, Gao B, Zhing M, Inyang M, Zimmerman AB. 2012. Effect of biochar amendment on sorption and leaching of nitrate, ammonium and phosphate in a sandy soil. Chemosphere. 89:1467–1471. doi: 10.1016/j.chemosphere.2012.06.002
  • Zackrisson O, Nilsson MC, Wardle DA. 1996. Key ecological function of charcoal from wildfire in the boreal forest. Oikos. 77:10–19. doi: 10.2307/3545580
  • Zhang P, Zheng J, Pan G, Zhang X, Li L, Rolf T. 2007. Changes in microbial community structure and function within particle size fractions of a paddy soil under different long-term fertilization treatments from the Tai lake region, China. Colloids Surf B: Biointerfaces. 58(2):264–270. doi: 10.1016/j.colsurfb.2007.03.018
  • Zheng H, Wang Z, Deng X, Herbert S, Xing BS. 2013. Impacts of adding biochar on nitrogen retention and bioavailability in agricultural soil. Geoderma. 206:32–39. doi: 10.1016/j.geoderma.2013.04.018

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