Proteomics of Physcomitrella patens protonemata subjected to treatment with 12-oxo-phytodienoic acid

References

• Wasternack C. Jasmonates: an update on biosynthesis, signal transduction and action in plant stress response, growth and development. Ann. Bot. 2007;100:681–697.10.1093/aob/mcm079
   PubMed Web of Science ®Google Scholar
• Browse J, Howe GA. New weapons and a rapid response against insect attack. Plant Physiol. 2008;146:832–838.10.1104/pp.107.115683
   PubMed Web of Science ®Google Scholar
• Howe GA, Jander G. Plant immunity to insect herbivores. Annu. Rev. Plant Biol. 2008;59:41–66.10.1146/annurev.arplant.59.032607.092825
   PubMed Web of Science ®Google Scholar
• Browse J. Jasmonate passes muster: a receptor and targets for the defense hormone. Annu. Rev. Plant Biol. 2009;60:183–205.10.1146/annurev.arplant.043008.092007
   PubMed Web of Science ®Google Scholar
• Böttcher C, Pollmann S. Plant oxylipins: plant responses to 12-oxo-phytodienoic acid are governed by its specific structural and functional properties. FEBS J. 2009;276:4693–4704.10.1111/j.1742-4658.2009.07195.x
   PubMed Web of Science ®Google Scholar
• Schaller A, Stintzi A. Enzymes in jasmonate biosynthesis – structure, function, regulation. Phytochemistry. 2009;70:1532–1538.10.1016/j.phytochem.2009.07.032
   PubMed Web of Science ®Google Scholar
• Anterola A, Göbel C, Hornung E, et al. Physcomitrella patens has lipoxygenases for both eicosanoid and octadecanoid pathways. Phytochemistry. 2009;70:40–52.10.1016/j.phytochem.2008.11.012
   PubMed Web of Science ®Google Scholar
• Bandara PKGSS, Takahashi K, Sato M, et al. Cloning and functional analysis of an allene oxide synthase in Physcomitrella patens. Biosci. Biotechnol. Biochem. 2009; 73: 2356–2359.
   PubMed Web of Science ®Google Scholar
• Hashimoto T, Takahashi K, Sato M, et al. Cloning and characterization of an allene oxide cyclase, PpAOC3, in Physcomitrella patens. Plant Growth Regul. 2011;65:239–245.10.1007/s10725-011-9592-z
   Web of Science ®Google Scholar
• Stumpe M, Göbel C, Faltin B, et al. The moss Physcomitrella patens contains cyclopentenones but no jasmonates: mutations in allene oxide cyclase lead to reduced fertility and altered sporophyte morphology. New Phytol. 2010;188:740–749.10.1111/j.1469-8137.2010.03406.x
   PubMed Web of Science ®Google Scholar
• Balbi V, Devoto A. Jasmonate signalling network in Arabidopsis thaliana: crucial regulatory nodes and new physiological scenarios. New Phytol. 2008;177:301–318.
   PubMed Web of Science ®Google Scholar
• Taki N, Sasaki-Sekimoto Y, Obayashi T, et al. 12-Oxo-phytodienoic acid triggers expression of a distinct set of genes and plays a role in wound-induced gene expression in Arabidopsis. Plant Physiol. 2005;139:1268–1283.10.1104/pp.105.067058
   PubMed Web of Science ®Google Scholar
• Goetz S, Hellwege A, Stenzel I, et al. Role of cis-12-oxo-phytodienoic acid in tomato embryo development. Plant Physiol. 2012;158:1715–1727.10.1104/pp.111.192658
   PubMed Web of Science ®Google Scholar
• Dave A, Hernández ML, He Z, et al. 12-Oxo-phytodienoic acid accumulation during seed development represses seed germination in Arabidopsis. Plant Cell. 2011;23:583–599.10.1105/tpc.110.081489
   PubMed Web of Science ®Google Scholar
• Rensing SA, Lang D, Zimmer AD, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science. 2008;319:64–69.10.1126/science.1150646
   PubMed Web of Science ®Google Scholar
• Hiss M, Laule O, Meskauskiene RM, et al. Large-scale gene expression profiling data for the model moss Physcomitrella patens aid understanding of developmental progression, culture and stress conditions. Plant J. 2014;79:530–539.10.1111/tpj.12572
   PubMed Web of Science ®Google Scholar
• Ponce De León I, Schmelz EA, Gaggero C, et al. Physcomitrella patens activates reinforcement of the cell wall, programmed cell death and accumulation of evolutionary conserved defence signals, such as salicylic acid and 12-oxo-phytodienoic acid, but not jasmonic acid, upon Botrytis cinerea infection. Mol. Plant Pathol. 2012;13:960–974.10.1111/mpp.2012.13.issue-8
   PubMed Web of Science ®Google Scholar
• Scholz J, Brodhun F, Hornung E, et al. Biosynthesis of allene oxides in Physcomitrella patens. BMC Plant Biol. 2012;12:228. doi:10.1186/s12870-016-0865-610.1186/1471-2229-12-228
   PubMed Web of Science ®Google Scholar
• Toshima E, Nanjo Y, Komatsu S, et al. Proteomic analysis of Physcomitrella patens treated with 12-oxo-phytodienoic acid, an important oxylipin in plants. Biosci. Biotechnol. Biochem. 2014;78:946–953.10.1080/09168451.2014.912112
   PubMed Web of Science ®Google Scholar
• Ashton NW, Cove DJ. Isolation and preliminary characterization of auxotrophic and analog resistant mutants of moss, Physcomitrella patens. Mol. Gen. Gen. 1977;154:87–95.10.1007/BF00265581
   Google Scholar
• Kajiwara A, Abe T, Hashimoto T, et al. Efficient synthesis of (+)- cis-12-oxo-phytodienoic acid by an in vitro enzymatic reaction. Biosci. Biotechnol. Biochem. 2012;76:2325–2328.10.1271/bbb.120506
   PubMed Web of Science ®Google Scholar
• Yamamoto Y, Ohshika J, Takahashi T, et al. Functional analysis of allene oxide cyclase, MpAOC, in the liverwort Marchantia polymorpha. Phytochemistry. 2015;116:48–56.10.1016/j.phytochem.2015.03.008
   PubMed Web of Science ®Google Scholar
• Komatsu S, Han C, Nanjo Y, et al. Label-free quantitative proteomic analysis of abscisic acid effect in early-stage soybean under flooding. J. Proteome Res. 2013;12:4769–4784.10.1021/pr4001898
   PubMed Web of Science ®Google Scholar
• Nanjo Y, Skultety L, Uváčková L, et al. Mass spectrometry-based analysis of proteomic changes in the root tips of flooded soybean seedlings. J. Proteome Res. 2012;11:372–385.10.1021/pr200701y
   PubMed Web of Science ®Google Scholar
• Olsen JV, de Godoy LMF, Li GQ, et al. Parts per million mass accuracy on an orbitrap mass spectrometer via lock mass injection into a C-trap. Mol. Cell. Proteomics. 2005;4:2010–2021.10.1074/mcp.T500030-MCP200
   PubMed Web of Science ®Google Scholar
• Zhang Y, Wen Z, Washburn MP, et al. Effect of dynamic exclusion duration on spectral count based quantitative proteomics. Anal. Chem. 2009;81:6317–6326.10.1021/ac9004887
   PubMed Web of Science ®Google Scholar
• Brosch M, Yu L, Hubbard T, et al. Accurate and sensitive peptide identification with Mascot Percolator. J. Proteome Res. 2009;8:3176–3181.10.1021/pr800982s
   PubMed Web of Science ®Google Scholar
• Le Bail A, Scholz S, Kost B. Evaluation of reference genes for RT qPCR analyses of structure-specific and hormone regulated gene expression in Physcomitrella patens gametophytes. PLoS ONE. 2013;8:e70998.10.1371/journal.pone.0070998
   PubMed Web of Science ®Google Scholar
• Roberts AW, Roberts EM, Haigler CH. Moss cell walls: structure and biosynthesis. Front Plant Sci. 2012;3:1–7.
   PubMed Web of Science ®Google Scholar
• Kochhar A, Khurana JP, Tyagi AK. Nucleotide sequence of the psbP gene encoding precursor of 23-kDa polypeptide of oxygen-evolving complex in Arabidopsis thaliana and its expression in the wild-type and a constitutively photomorphogenic mutant. DNA Res. 1996;3:277–285.10.1093/dnares/3.5.277
   PubMedGoogle Scholar
• Shi J, Yi K, Liu Y, et al. Phosphoenolpyruvate carboxylase in Arabidopsis leaves plays a crucial role in carbon and nitrogen metabolism. Plant Physiol. 2015;167:671–681.10.1104/pp.114.254474
   PubMed Web of Science ®Google Scholar
• Malinova I, Kunz HH, Alseekh S, et al. Reduction of the cytosolic phosphoglucomutase in Arabidopsis reveals impact on plant growth, seed and root development, and carbohydrate partitioning. PLoS ONE. 2014;9:e112468.10.1371/journal.pone.0112468
   PubMed Web of Science ®Google Scholar
• Joshi R, Karan R, Singla-Pareek SL, et al. Ectopic expression of Pokkali phosphoglycerate kinase-2 (OsPGK2-P) improves yield in tobacco plants under salinity stress. Plant Cell Rep. 2016;35:27–41.10.1007/s00299-015-1864-z
   PubMed Web of Science ®Google Scholar
• Romano AH, Conway T. Evolution of carbohydrate metabolic pathways. Res. Microbiol. 1996;147:448–455.10.1016/0923-2508(96)83998-2
   PubMed Web of Science ®Google Scholar
• Morishita R, Kawagoshi A, Sawasaki T, et al. Ribonuclease activity of rat liver perchloric acid-soluble Protein, a potent inhibitor of protein synthesis. J. Biol. Chem. 1999;274:20688–20692.10.1074/jbc.274.29.20688
   PubMed Web of Science ®Google Scholar
• Hedegaard J, Hauge M, Fage-Larsen J, et al. Investigation of the translation-initiation factor IF2 gene, infB, as a tool to study the population structure of Streptococcus agalactiae. Microbiology-UK. 2000;146:1661–1670.10.1099/00221287-146-7-1661
   PubMed Web of Science ®Google Scholar
• Marino-Ramirez L, Jordan IK, Landsman D. Multiple independent evolutionary solutions to core histone gene regulation. Genome Biol. 2006;7:1–17.
   Web of Science ®Google Scholar
• Farmer EE, Mueller MJ. ROS-mediated lipid peroxidation and RES-activated signaling. Annu. Rev. Plant Biol. 2013;64:429–450.10.1146/annurev-arplant-050312-120132
   PubMed Web of Science ®Google Scholar
• Dueckershoff K, Mueller S, Mueller MJ, et al. Impact of cyclopentenone-oxylipins on the proteome of Arabidopsis thaliana. Biochim. Biophys. Acta. 2008;1784:1975–1985.10.1016/j.bbapap.2008.09.003
   PubMed Web of Science ®Google Scholar
• Kornberg RD. Structure of chromatin. Annu. Rev. Biochem. 1977;46:931–954.10.1146/annurev.bi.46.070177.004435
   PubMed Web of Science ®Google Scholar