Vascular plant one-zinc finger 1 (VOZ1) and VOZ2 negatively regulate phytochrome B-mediated seed germination in Arabidopsis

References

• Bentsink L, Koornneef M. Seed dormancy and germination. Arab B. 2008;6:e0119.
   PubMedGoogle Scholar
• Rajjou L, Duval M, Gallardo K, et al. Seed germination and vigor. Annu Rev Plant Biol. 2012;63(1):507–533.
   PubMedGoogle Scholar
• Penfield S. Seed dormancy and germination. Curr Biol. 2017;27(17):R874–R878.
   PubMed Web of Science ®Google Scholar
• Shinomura T. Phytochrome regulation of seed germination. J Plant Res. 1997;110(1):151–161.
   PubMedGoogle Scholar
• Yamauchi Y, Ogawa M, Kuwahara A, et al. Activation of gibberellin biosynthesis and response pathways by low temperature during imbibition of Arabidopsis thaliana seeds. Plant Cell. 2004;16(2):367–378.
   PubMed Web of Science ®Google Scholar
• Ryu JS, Il KJ, Kunkel T, et al. Phytochrome-specific type 5 phosphatase controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. Cell. 2005;120(3):395–406.
   PubMed Web of Science ®Google Scholar
• Neff MM, Fankhauser C, Chory J. Light: an indicator of time and place. Genes Dev. 2000;14(3):257–271.
   PubMed Web of Science ®Google Scholar
• Quail PH. Phytochrome photosensory signalling networks. Nat Rev Mol Cell Biol. 2002;3(2):85–93.
   PubMed Web of Science ®Google Scholar
• Quail PH. Photosensory perception and signalling in plant cells: new paradigms? Curr Opin Cell Biol. 2002;14(2):180–188.
   PubMed Web of Science ®Google Scholar
• Chen M, Chory J. Phytochrome signaling mechanisms and the control of plant development. Trends Cell Biol. 2011;21(11):664–671.
   PubMed Web of Science ®Google Scholar
• Chaves I, Pokorny R, Byrdin M, et al. The cryptochromes: blue light photoreceptors in plants and animals. Annu Rev Plant Biol. 2011;62(1):335–364.
   PubMedGoogle Scholar
• Briggs WR, Christie JM. Phototropins 1 and 2: versatile plant blue-light receptors. Trends Plant Sci. 2002;7(5):204–210.
   PubMed Web of Science ®Google Scholar
• Christie JM. Phototropin blue-light receptors. Annu Rev Plant Biol. 2007;58(1):21–45.
   PubMedGoogle Scholar
• Nelson DC, Lasswell J, Rogg LE, et al. FKF1, a clock-controlled gene that regulates the transition to flowering in Arabidopsis. Cell. 2000;101(3):331–340.
   PubMed Web of Science ®Google Scholar
• Somers DE, Schultz TF, Milnamow M, et al. ZEITLUPE encodes a novel clock-associated PAS protein from Arabidopsis. Cell. 2000;101(3):319–329.
   PubMed Web of Science ®Google Scholar
• Schultz TF, Kiyosue T, Yanovsky M, et al. A role for LKP2 in the circadian clock of Arabidopsis. Plant Cell. 2001;13(12):2659–2670.
   PubMed Web of Science ®Google Scholar
• Suetsugu N, Wada M. Evolution of three LOV blue light receptor families in green plants and photosynthetic stramenopiles: phototropin, ZTL/FKF1/LKP2 and aureochrome. Plant Cell Physiol. 2013;54(1):8–23.
   PubMed Web of Science ®Google Scholar
• Rizzini L, Favory -J-J, Cloix C, et al. Perception of UV-B by the Arabidopsis UVR8 protein. Science. 2011;332(6025):103–106.
   PubMed Web of Science ®Google Scholar
• Donohue K, Heschel MS, Butler CM, et al. Diversification of phytochrome contributions to germination as a function of seed-maturation environment. New Phytol. 2008;177(2):367–379.
   PubMed Web of Science ®Google Scholar
• Poppe C, Schafer E. Seed germination of Arabidopsis thaliana phyA/phyB double mutants is under phytochrome control. Plant Physiol. 1997;114(4):1487–1492.
   PubMed Web of Science ®Google Scholar
• Bae G, Choi G. Decoding of light signals by plant phytochromes and their interacting proteins. Annu Rev Plant Biol. 2008;59(1):281–311.
   PubMedGoogle Scholar
• Hennig L, Stoddart WM, Dieterle M, et al. Phytochrome E controls light-induced germination of Arabidopsis. Plant Physiol. 2002;128(1):194–200.
   PubMed Web of Science ®Google Scholar
• Sineshchekov VA. Photobiophysics and photobiochemistry of the heterogeneous phytochrome system. Biochim Biophys Acta - Bioenergy. 1995;1228(2–3):125–164.
   Web of Science ®Google Scholar
• Rockwell NC, Su Y-S, Lagarias JC. Phytochrome structure and signaling mechanisms. Annu Rev Plant Biol. 2006;57(1):837–858.
   PubMedGoogle Scholar
• Kircher S. Nucleocytoplasmic partitioning of the plant photoreceptors phytochrome A, B, C, D, and E is regulated differentially by light and exhibits a diurnal rhythm. Plant Cell Online. 2002;14(7):1541–1555.
   PubMed Web of Science ®Google Scholar
• Mathews S, Sharrock RA. Phytochrome gene diversity. Plant Cell Environ. 1997;20(6):666–671.
   Web of Science ®Google Scholar
• Sharrock RA, Quail PH. Novel phytochrome sequences in Arabidopsis thaliana: structure, evolution, and differential expression of a plant regulatory photoreceptor family. Genes Dev. 1989;3(11):1745–1757.
   PubMed Web of Science ®Google Scholar
• Clack T, Mathews S, Sharrock RA. The phytochrome apoprotein family in Arabidopsis is encoded by five genes: the sequences and expression of PHYD and PHYE. Plant Mol Biol. 1994;25(3):413–427.
   PubMed Web of Science ®Google Scholar
• Franklin KA, Quail PH. Phytochrome functions in Arabidopsis development. J Exp Bot. 2010;61(1):11–24.
   PubMed Web of Science ®Google Scholar
• Ibarra SE, Auge G, Sánchez RA, et al. Transcriptional programs related to phytochrome A function in Arabidopsis seed germination. Mol Plant. 2013;6(4):1261–1273.
   PubMed Web of Science ®Google Scholar
• Botto JF, Sánchez RA, Casal JJ. Role of phytochrome B in the induction of seed germination by light in Arabidopsis thaliana. J Plant Physiol. 1995;146(3):307–312.
   Web of Science ®Google Scholar
• Botto JF, Sanchez RA, Whitelam GC, et al. Phytochrome A mediates the promotion of seed germination by very low fluences of light and canopy shade light in Arabidopsis. Plant Physiol. 1996;110(2):439–444.
   PubMed Web of Science ®Google Scholar
• Shinomura T, Nagatani A, Hanzawa H, et al. Action spectra for phytochrome A- and B-specific photoinduction of seed germination in Arabidopsis thaliana. Proc Natl Acad Sci. 1996;93(15):8129–8133.
   PubMed Web of Science ®Google Scholar
• Seo M, Nambara E, Choi G, et al. Interaction of light and hormone signals in germinating seeds. Plant Mol Biol. 2009;69(4):463–472.
   PubMed Web of Science ®Google Scholar
• Seo M, Hanada A, Kuwahara A, et al. Regulation of hormone metabolism in Arabidopsis seeds: phytochrome regulation of abscisic acid metabolism and abscisic acid regulation of gibberellin metabolism. Plant J. 2006;48:354–366.
   PubMed Web of Science ®Google Scholar
• Piskurewicz U, Jikumaru Y, Kinoshita N, et al. The gibberellic acid signaling repressor RGL2 inhibits Arabidopsis seed germination by stimulating abscisic acid synthesis and ABI5 activity. Plant Cell Online. 2008;20(10):2729–2745.
   PubMed Web of Science ®Google Scholar
• Kendall SL, Hellwege A, Marriot P, et al. Induction of dormancy in Arabidopsis summer annuals requires parallel regulation of DOG1 and hormone metabolism by low temperature and CBF transcription factors. Plant Cell. 2011;23:2568–2580.
   PubMed Web of Science ®Google Scholar
• Piskurewicz U, Turečková V, Lacombe E, et al. Far-red light inhibits germination through DELLA-dependent stimulation of ABA synthesis and ABI3 activity. Embo J. 2009;28(15):2259–2271.
   PubMed Web of Science ®Google Scholar
• Shu K, Liu XD, Xie Q, et al. Two faces of one seed: hormonal regulation of dormancy and germination. Mol Plant. 2016;9(1):34–45.
   PubMed Web of Science ®Google Scholar
• Lau OS, Deng XW. Plant hormone signaling lightens up: integrators of light and hormones. Curr Opin Plant Biol. 2010;13(5):571–577.
   PubMed Web of Science ®Google Scholar
• de Wit M, Galvão VC, Fankhauser C. Light-mediated hormonal regulation of plant growth and development. Annu Rev Plant Biol. 2016;67:513–537.
   PubMed Web of Science ®Google Scholar
• Oh E. PIL5, a phytochrome-interacting basic Helix-Loop-Helix protein, is a key negative regulator of seed germination in Arabidopsis thaliana. Plant Cell Online. 2004;16:3045–3058.
   PubMed Web of Science ®Google Scholar
• Oh E, Yamaguchi S, Kamiya Y, et al. Light activates the degradation of PIL5 protein to promote seed germination through gibberellin in Arabidopsis. Plant J. 2006;47:124–139.
   PubMed Web of Science ®Google Scholar
• Oh E, Yamaguchi S, Hu J, et al. PIL5, a phytochrome-interacting bHLH protein, regulates gibberellin responsiveness by binding directly to the GAI and RGA promoters in Arabidopsis seeds. Plant Cell Online. 2007;19:1192–1208.
   PubMed Web of Science ®Google Scholar
• Gabriele S, Rizza A, Martone J, et al. The Dof protein DAG1 mediates PIL5 activity on seed germination by negatively regulating GA biosynthetic gene AtGA3ox1. Plant J. 2010;61:312–323.
   PubMed Web of Science ®Google Scholar
• Kim DH, Yamaguchi S, Lim S, et al. SOMNUS, a CCCH-Type zinc finger protein in Arabidopsis, negatively regulates light-dependent seed germination downstream of PIL5. Plant Cell Online. 2008;20:1260–1277.
   PubMed Web of Science ®Google Scholar
• Jiang Z, Xu G, Jing Y, et al. Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun. 2016;7(1):1–10.
   Google Scholar
• Yang L, Jiang Z, Liu S, et al. Interplay between REVEILLE1 and RGA‐LIKE2 regulates seed dormancy and germination in Arabidopsis. New Phytol. Epub ahead of print. 2019. DOI:10.1111/nph.16236.
   Google Scholar
• Nobutaka M, Toru H, Kunio T, et al. VOZ; isolation and characterization of novel vascular plant transcription factors with a one-zinc finger from Arabidopsis thaliana. Plant Cell Physiol. 2004;45:845–854.
   PubMed Web of Science ®Google Scholar
• Yasui Y, Mukougawa K, Uemoto M, et al. The phytochrome-interacting VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 redundantly regulate flowering in Arabidopsis. Plant Cell. 2012;24(8):3248–3263.
   PubMed Web of Science ®Google Scholar
• Celesnik H, Ali GS, Robison FM, et al. Arabidopsis thaliana VOZ (Vascular plant One-Zinc finger) transcription factors are required for proper regulation of flowering time. Biol Open. 2013;2:424–431.
   PubMed Web of Science ®Google Scholar
• Yasui Y, Kohchi T. VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci Biotechnol Biochem. 2014;78(11):1850–1855.
   PubMed Web of Science ®Google Scholar
• Kumar S, Choudhary P, Gupta M, et al. VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 interact with CONSTANS and promote photoperiodic flowering transition. Plant Physiol. 2018;176(4):2917–2930.
   PubMed Web of Science ®Google Scholar
• Nakai Y, Nakahira Y, Sumida H, et al. Vascular plant one-zinc-finger protein 1/2 transcription factors regulate abiotic and biotic stress responses in Arabidopsis. Plant J. 2013;73:761–775.
   PubMed Web of Science ®Google Scholar
• Nakai Y, Fujiwara S, Kubo Y, et al. Overexpression of VOZ2 confers biotic stress tolerance but decreases abiotic stress resistance in Arabidopsis. Plant Signal Behav. 2013;8:2–5.
   Google Scholar
• Koguchi M, Yamasaki K, Hirano T, et al. Vascular plant one-zinc-finger protein 2 is localized both to the nucleus and stress granules under heat stress in Arabidopsis. Plant Signal Behav. 2017;12(3):1–7.
   Web of Science ®Google Scholar
• Song C, Lee J, Kim T, et al. VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta. 2018;247:1439–1448.
   PubMed Web of Science ®Google Scholar
• Prasad KVSK, Xing D, Reddy ASN. Vascular plant one-zinc-finger (VOZ) transcription factors are positive regulators of salt tolerance in Arabidopsis. Int J Mol Sci. 2018;19(12):3731. Epub ahead of print.
   PubMed Web of Science ®Google Scholar
• Reed JW, Nagpal P, Poole DS, et al. Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development. Plant Cell. 1993;5(2):147–157.
   PubMed Web of Science ®Google Scholar
• Clough SJ, Bent AF. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 1998;16(6):735–743.
   PubMed Web of Science ®Google Scholar
• Peng J, Yu D, Wang L, et al. Arabidopsis F-box gene FOA1 involved in ABA signaling. Sci China Life Sci. 2012;55(6):497–506.
   PubMed Web of Science ®Google Scholar
• Liu H, Yu X, Li K, et al. Photoexcited CRY2 interacts with CIB1 to regulate transcription and floral initiation in Arabidopsis. Science. 2008;322(5907):1535–1539.
   PubMed Web of Science ®Google Scholar
• He R, Li X, Zhong M, et al. A photo-responsive F-box protein FOF2 regulates floral initiation by promoting FLC expression in Arabidopsis. Plant J. 2017;91:788–801.
   PubMed Web of Science ®Google Scholar
• Li C, Liu X, Qiang X, et al. EBP1 nuclear accumulation negatively feeds back on FERONIA-mediated RALF1 signaling. PLOS Biology. 2018;16(10):e2006340. Epub ahead of print.
   Web of Science ®Google Scholar
• Shinomura T, Nagatani A, Chory J, et al. The induction of seed germination in Arabidopsis thaliana is regulated principally by phytochrome B and secondarily by phytochrome A. Plant Physiol. 1994;104(2):363–371.
   PubMed Web of Science ®Google Scholar
• Shinomura T, Hanzawa H, Schäfer E, et al. Mode of phytochrome B action in the photoregulation of seed germination in Arabidopsis thaliana. Plant J. 1998;13(5):583–590.
   PubMed Web of Science ®Google Scholar
• Winter D, Vinegar B, Nahal H, et al. An ‘electronic fluorescent pictograph’ browser for exploring and analyzing large-scale biological data sets. PLoS One. 2007;2(8):1–12.
   Web of Science ®Google Scholar
• Alonso-Blanco C, Bentsink L, Hanhart CJ, et al. Analysis of natural allelic variation at seed dormancy loci of Arabidopsis thaliana. Genetics. 2003;164(2):711–729.
   PubMed Web of Science ®Google Scholar
• Bentsink L, Jowett J, Hanhart CJ, et al. Cloning of DOG1, a quantitative trait locus controlling seed dormancy in Arabidopsis. Proc Natl Acad Sci. 2006;103(45):17042–17047.
   PubMed Web of Science ®Google Scholar
• Nakabayashi K, Bartsch M, Xiang Y, et al. The time required for dormancy release in Arabidopsis is determined by DELAY OF GERMINATION1 protein levels in freshly harvested seeds. Plant Cell. 2012;24(7):2826–2838.
   PubMed Web of Science ®Google Scholar
• Yamaguchi S, Smith MW, Brown RGS, et al. Phytochrome regulation and differential expression of gibberellin 3β-hydroxylase genes in germinating Arabidopsis seeds. Plant Cell. 1998;10:2115–2126.
   PubMed Web of Science ®Google Scholar
• Sun T. Molecular mechanism of gibberellins signalling in plants. Annu Biol. 2004;55:197–223.
   Google Scholar
• Oh E, Kang H, Yamaguchi S, et al. Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis. Plant Cell. 2009;21(2):403–419.
   PubMed Web of Science ®Google Scholar