The circadian system of Chlamydomonas reinhardtii

References

• Bruce , V G . 1970 . The biological clock in Chlamydomonas reinhardtii . J Protozool , 17 : 328 – 334 .
   Google Scholar
• Bruce , V G . 1972 . Mutants of the biological clock in Chlamydomonas reinhardtii . Genetics , 70 : 537 – 548 .
   PubMed Web of Science ®Google Scholar
• Bruce , V G and Bruce , N C . 1978 . Diploids of clock mutants of Chlamydomonas reinhardtii . Genetics , 89 : 225 – 233 .
   PubMed Web of Science ®Google Scholar
• Byrne , T E , Wells , M R and Johnson , C H . 1992 . Circadian rhythms of chemotaxis to ammonium and methylammonium uptake in Chlamydomonas . Plant Physiol , 98 : 879 – 886 .
   PubMed Web of Science ®Google Scholar
• Davis-Smyth , T , Duncan , R C , Zheng , T , Michelotti , G and Levens , D . 1996 . The far upstream element-binding proteins comprise an ancient family of single-strand DNA-binding transctivators . J Biol Chem , 271 : 31679 – 31687 .
   PubMedGoogle Scholar
• Fuhrmann , M . 2002 . Expanding the molecular toolkit for Chlamydomonas reinhardtii – from history to new frontiers . Protist , 153 : 357 – 364 .
   PubMedGoogle Scholar
• Fuhrmann , M , Hausherr , A , Ferbitz , L , Schödl , T , Heitzer , M and Hegemann , P . 2004 . Monitoring dynamic expression of nuclear genes in Chlamydomonas reinhardtii by using a synthetic luciferase reporter gene . Plant Mol Biol , 55 : 869 – 881 .
   PubMed Web of Science ®Google Scholar
• Freedman , R B , Hirst , T R and Tuite , M F . 1994 . Protein disulphide isomerase: building bridges in protein folding . Trends Biochem Sci , 19 : 331 – 336 .
   PubMed Web of Science ®Google Scholar
• Goto , K and Johnson , C H . 1995 . Is the cell division cycle gated by a circadian clock? The case of Chlamydomonas reinhardtii . J Cell Biol , 129 : 1061 – 1069 .
   PubMed Web of Science ®Google Scholar
• Grossman , A R , Harris , E E , Hauser , C , Lefebvre , P A , Martinez , D , Rokhsar , D , Shrager , J , Silflow , C D , Stern , D , Vallon , O and Zhang , Z . 2003 . Chlamydomonas reinhardtii at the crossroads of genomics . Eukaryot Cell , 2 : 1137 – 1150 .
   PubMed Web of Science ®Google Scholar
• Grossman , A . 2005 . Paths toward algal genomics . Plant Physiol , 137 : 410 – 427 .
   PubMed Web of Science ®Google Scholar
• Harris , E H . 2001 . Chlamydomonas as model organism . Ann Rev Plant Physiol Plant Mol Biol , 52 : 363 – 406 .
   PubMed Web of Science ®Google Scholar
• He , Q , Cheng , R , Yang , Y , He , Q , Yu , H and Liu , Y . 2003 . FWD1-mediated degradation of FREQUENCY in Neurospora establishes a conserved mechanism for circadian clock regulation . EMBO J , 22 : 4421 – 4430 .
   PubMed Web of Science ®Google Scholar
• Huang , K and Beck , C F . 2003 . Phototropin is the blue-light receptor that controls multiple steps in the sexual life cycle of the green alga Chlamydomonas reinhardtii . Proc Natl Acad Sci USA , 100 : 6269 – 6274 .
   PubMed Web of Science ®Google Scholar
• Jacobshagen , S , Kindle , K L and Johnson , C H . 1996 . Transcription of cab II is regulated by the biological clock in Chlamydomonas reinhardtii . Plant Mol Biol , 31 : 1173 – 1184 .
   PubMed Web of Science ®Google Scholar
• Johnson , C H , Kondo , T and Goto , K . Circadian rhythms in Chlamydomonas . Circadian Clocks from Cell to Human. Proceedings of the Fourth Sapporo Symposium on Biological Rhythms . pp. 139 – 155 . Japan : Hokkaido University Press .
   Google Scholar
• Kathir , P , LaVoie , M , Brazelton , W J , Haas , N A , Lefebvre , P A and Silflow , C D . 2003 . Molecular map of the Chlamydomonas reinhardtii nuclear genome . Eukaryot Cell , 2 : 362 – 379 .
   PubMedGoogle Scholar
• Ko , H W , Jiang , J and Edery , I . 2002 . Role for Slimb in the degradation of Drosophila Period protein phosphorylated by Doubletime . Nature , 420 : 673 – 678 .
   PubMed Web of Science ®Google Scholar
• Kuersten , S and Goodwin , E B . 2003 . The power of the 3' UTR: Translational control and development . Nature Rev Genet , 4 : 626 – 637 .
   PubMed Web of Science ®Google Scholar
• Ladd , A N , Charlet-B , N and Cooper , T A . 2001 . The CELF family of RNA binding proteins is implicated in cell-specific and developmentally regulated alternative splicing . Mol Cell Biol , 21 : 1285 – 1296 .
   PubMed Web of Science ®Google Scholar
• Lemaire , S D , Guillon , B , Le Marechal , P , Keryer , E , Miginiac-Maslow , M and Decottignies , P . 2004 . New thioredoxin targets in the unicellular photosynthetic eukaryote Chlamydomonas reinhardtii . Proc Natl Acad Sci USA , 101 : 7475 – 7480 .
   PubMed Web of Science ®Google Scholar
• Lu , X , Timchenko , N A and Timchenko , L T . 1999 . Cardiac elav-type RNA-binding protein (ETR-3) binds to RNA CUG repeats expanded in myotonic dystrophy . Mol Hum Genet , 8 : 53 – 60 .
   PubMedGoogle Scholar
• Mergenhagen , D . 1984 . Circadian clock: genetic characterization of a short period mutant of Chlamydomonas reinhardtii . Eur J Cell Biol , 33 : 13 – 18 .
   PubMed Web of Science ®Google Scholar
• Mergenhagen , D and Mergenhagen , E . 1987 . The biological clock of Chlamydomonas reinhardtii in space . Eur J Cell Biol , 43 : 203 – 207 .
   PubMed Web of Science ®Google Scholar
• Mittag , M . 1996 . Conserved circadian elements in phylogenetically diverse algae . Proc Natl Acad Sci USA , 93 : 14401 – 14404 .
   PubMedGoogle Scholar
• Mittag , M . 2003 . The function of circadian RNA-binding proteins and their cis-acting elements in microalgae . Chronobiol Int , 20 : 529 – 541 .
   PubMed Web of Science ®Google Scholar
• Mittag , M , Kiaulehn , S and Johnson , C H . 2005 . The circadian clock in Chlamydomonas reinhardtii: What is it for? What is it similar to? . Plant Physiol , 137 : 399 – 409 .
   PubMed Web of Science ®Google Scholar
• Mittag , M , Lee , D H and Hastings , J W . 1994 . Circadian expression of the luciferin-binding protein correlates with the binding of a protein to the 3′ untranslated region of its mRNA . Proc Natl Acad Sci USA , 91 : 5257 – 5261 .
   PubMed Web of Science ®Google Scholar
• Mittag , M and Waltenberger , H . 1997 . In vitro mutagenesis of binding site elements of the clock-controlled proteins CCTR and Chlamy 1 . Biol Chem , 378 : 1167 – 1170 .
   PubMedGoogle Scholar
• Mukhopadhyay , D , Houchen , C W , Kennedy , S , Dieckgraefe , B K and Anant , S . 2003 . Coupled mRNA stabilization and translational silencing of cyclooxygenase-2 by a novel RNA binding protein, CUGBP2 . Mol Cell , 11 : 113 – 126 .
   PubMed Web of Science ®Google Scholar
• Nikaido , S S and Johnson , C H . 2000 . Daily and circadian variation in survival from ultraviolet radiation in Chlamydomonas reinhardtii . Photochem Photobiol , 71 : 758 – 765 .
   PubMed Web of Science ®Google Scholar
• Okumura , K , Aso , Y , Tayama , K , Yoshida , N , Takiguchi , Y , Takemura , Y and Inukai , T . 2002 . Myotonic dystrophy associated with variable circadian rhythms of serum cortisol and isolated thyrotropin . Am J Med Sci , 324 : 158 – 160 .
   PubMed Web of Science ®Google Scholar
• Pajuelo , E , Pajuelo , P , Clemente , M T and Marquez , A J . 1995 . Regulation of the expression of ferredoxin-nitrite reductase in synchronous cultures of Chlamydomonas reinhardtii . Biochim Biophys Acta , 1249 : 72 – 78 .
   PubMedGoogle Scholar
• Ranum , L P and Day , J W . 2004 . Myotonic dystrophy: RNA pathogenesis comes into focus . Am J Hum Genet , 74 : 793 – 804 .
   PubMedGoogle Scholar
• Reisdorph , N A and Small , G D . 2004 . The CPH1 gene of Chlamydomonas reinhardtii encodes two forms of cryptochrome whose levels are controlled by light-induced proteolysis . Plant Physiol , 134 : 1546 – 1554 .
   PubMed Web of Science ®Google Scholar
• Salvador , M L , Klein , U and Bogorad , L . 1998 . Endogenous fluctuations of DNA topology in the chloroplast of Chlamydomonas reinhardtii . Mol Cell Biol , 18 : 7235 – 7242 .
   PubMed Web of Science ®Google Scholar
• Stauber , E J , Fink , A , Markert , C , Kruse , O , Johanningmeier , U and Hippler , M . 2003 . Proteomics of Chlamydomonas reinhardtii light-harvesting proteins . Eukaryot Cell , 2 : 978 – 994 .
   PubMedGoogle Scholar
• Straley , S C and Bruce , V G . 1979 . Stickiness to glass: circadian changes in the cell surface of Chlamydomonas reinhardtii . Plant Physiol , 63 : 1175 – 1181 .
   PubMed Web of Science ®Google Scholar
• Sudol , M and Hunter , T . 2000 . New wrinkles for an old domain . Cell , 103 : 1001 – 1004 .
   PubMed Web of Science ®Google Scholar
• Suzuki , L and Johnson , C H . 2002 . Photoperiodic control of germination in the unicell Chlamydomonas . Naturwissenschaften , 89 : 214 – 220 .
   PubMedGoogle Scholar
• Takahashi , N , Sasagawa , N , Suzuki , K and Ishiura , S . 2000 . The CUG-binding protein binds specifically to UG dinucleotide repeats in a yeast three-hybrid system . Biochem Biophys Res Co , 277 : 518 – 523 .
   PubMedGoogle Scholar
• Timchenko , L T , Timchenko , N A , Caskey , C T and Roberts , R . 1996 . Novel proteins with binding specificity for DNA CTG repeats and RNA CUG repeats: implications for myotonic dystrophy . Human Mol Gen , 5 : 115 – 121 .
   PubMedGoogle Scholar
• van der Voorn , L and Ploegh , G H . 1992 . The WD-40 repeat . FEBS Lett , 307 : 131 – 134 .
   PubMed Web of Science ®Google Scholar
• Wagner , V , Fiedler , M , Markert , C , Hippler , M and Mittag , M . 2004 . Functional proteomics of circadian expressed proteins from Chlamydomonas reinhardtii . FEBS Lett , 559 : 129 – 135 .
   PubMed Web of Science ®Google Scholar
• Wagner , V , Geßner , G and Mittag , M . 2005 . Functional proteomics: A promising approach to find novel components of the circadian system . Chronobiol Int , 2 ( 2 ) : 403 – 415 .
   Google Scholar
• Waltenberger , H , Schneid , C , Grosch , J O , Bareiss , A and Mittag , M . 2001 . Identification of target mRNAs for the clock-controlled RNA-binding protein Chlamy 1 from Chlamydomonas reinhardtii . Mol Genet Genomics , 265 : 180 – 188 .
   PubMedGoogle Scholar
• Yamaguchi , K , Beligni , M V , Prieto , S , Haynes , P A , McDonald , W H , Yates , J R 3rd and Mayfield , S P . 2003 . Proteomic characterization of the Chlamydomonas reinhardtii chloroplast ribosome. Identification of proteins unique to the 70S ribosome . J Biol Chem , 278 : 33774 – 33785 .
   PubMedGoogle Scholar
• Yang , P , Fox , L , Colbran , R J and Sale , W S . 2000 . Protein phosphatases PP1 and PP2A are located in distinct positions in the Chlamydomonas flagellar axoneme . J Cell Sci , 113 : 91 – 102 .
   PubMedGoogle Scholar
• Yang , P and Sale , W S . 2000 . Casein kinase I is anchored on axonemal doublet microtubules and regulates flagellar dynein phosphorylation and activity . J Biol Chem , 275 : 18905 – 18912 .
   PubMed Web of Science ®Google Scholar
• Yang , H Q , Tang , R H and Cashmore , A R . 2001 . The signaling mechanism of Arabidopsis CRY1 involves direct interaction with COP1 . Plant Cell , 13 : 2573 – 2587 .
   PubMed Web of Science ®Google Scholar
• Zhao , B , Schneid , C , Iliev , D , Schmidt , E M , Wagner , V , Wollnik , F and Mittag , M . 2004 . The circadian RNA-binding protein CHLAMY 1 represents a novel type heteromer of RNA Recognition motif and lysine homology-containing subunits . Eukaryot Cell , 3 : 815 – 825 .
   PubMedGoogle Scholar