Using molecular tools to identify New Zealand endemic earthworms in a mine restoration project

References

• Admassu B. Juen A. Traugott M. (2006): Earthworm primers for DNA-based gut content analysis and their cross-reactivity in a multi-species system. – Soil Biology and Biochemistry 38: 1308–1315
   Google Scholar
• Agustí N DeVicente M. C. Gabarra R. (1999): Development of sequence amplified characterized region (SCAR) markers of Helicoverpa armigera: a new polymerase chain reaction-based technique for predator gut analysis. – Molecular Ecology 8: 1467–1474
   Google Scholar
• Bell L. (2001): Establishment of native ecosystems after mining – Australian experience across diverse biogeographic zones. – Ecological Engineering 17: 179–186
   Google Scholar
• Blakemore R. J. Lee K. E. Fraser P. (2009): Diversity of New Zealand earthworms and some aspects of their significance. – In press
   Google Scholar
• Boyer S. Wratten S. D. (2010): The potential of earthworms to restore ecosystem services after opencast mining – A review. – Basic and Applied Ecology, in press
   Google Scholar
• Brockie R. E. Moeed A. (1986): Animal biomass in a New Zealand forest compared with other parts of the world. – Oecologia 70: 24–34
   Google Scholar
• Buller District. (2009): Buller District Land Use Consent No. RC03/164. – www.coalnz.com/index.cfm/3,152,450/patrickensismanagementplan.pdf; www.coalnz.com/index.cfm/3,152,450/kiwimanagementplan.pdf
   Google Scholar
• Chen Y. Giles K. L. Payton M. E. Greenstone M. H. (2000): Identifying key cereal aphid predators by molecular gut analysis. – Molecular Ecology 9: 1887–1898
   Google Scholar
• Colbourne R. Powlesland R. G. (1988): Diet of the stewart island brown kiwi (Apteryx australis lawryi) at Scollay’s Fat, southern Stewart Island. – New Zealand Journal of Ecology 11: 99–104
   Google Scholar
• Cruickshank R. H. (2002): Molecular markers for the phylogenetics of mites and ticks. – Systematic and Applied Acarology 7: 3–14
   Google Scholar
• DeRojas M. Úbeda J. M. Cutillas C. Mora M. D. Ariza C. Guevara D. (2007): Utility of ITS1–5.8S-ITS2 and 16S mitochondrial DNA sequences for species identi cation and phylogenetic inference within the Rhinonyssus coniventris species complex (Acari: Rhinonyssidae). – Parasitology Research 100: 1041–1046
   Google Scholar
• Down C. G. Stocks J. (1977): Environmental impact of mining. – John Wiley & Sons
   Google Scholar
• Edgar R. C. (2004): MUSCLE: multiple sequence alignment with high accuracy and high throughput. – Nucleic Acids Research 32: 1792–1797
   Google Scholar
• Edwards C. (2004): Earthworm Ecology. – Boca Raton, Florida: CRC
   Google Scholar
• Edwards C. Bohlen P. J. (1996): Biology and Ecology of Earthworms. – London: Chapman & Hall
   Google Scholar
• Felsenstein J. (1985): Confidence limits on phylogenies: An approach using the bootstrap. – Evolution 39: 783–791
   Google Scholar
• Grant C. D. Ward S. C. Morley S. C. (2007): Return of ecosystem function to restored bauxite mines in Western Australia. – Restoration Ecology 15: 94–103
   Google Scholar
• Hebert, P. D. & Ratnasingham, S. (2007): BOLD: The barcode of life data system (URL: www.barcodinglife.org). – Molecular Ecology Notes 7: 355–364
   Google Scholar
• Hitchmough R. Bull L. Cromarty P. (2005): New Zealand Threat Classification System lists. – Wellington, New Zealand: Science & Technical Publishing, Department of Conservation
   Google Scholar
• Hoogendoorn M. Heimpel G. E. (2001): PCR-based gut content analysis of insect predators: using ribosomal ITS-1 fragments from prey to estimate predation frequency. – Molecular Ecology 10: 2059–2068
   Google Scholar
• Hossner L. R. (1988): Reclamation of surface-mined Lands. Volume 1. – Boca Raton, Florida: CRC Press
   Google Scholar
• Huang J. Xu Q. Sun Z. J. Tang G. L. Su Z. Y. (2007): Identifying earthworms through DNA barcodes. – Pedobiologia 51: 301–309
   Google Scholar
• Hüttl R. F. Weber E. (2001): Forest ecosystem development in post-mining landscapes: a case study of the Lusatian lignite district. – Naturwissenschaften 88: 322–329
   Google Scholar
• Jamieson B. G. (1995): New species and a new genus of earthworms in the collections of the Queensland Museum (Megascolecidae: Oligochaeta). – Memoirs of the Queensland Museum 38: 575–596
   Google Scholar
• Jamieson B. Tillier S. Tillier A. Justine J. Ling E. James S. McDonald K. Hugall A. (2002): Phylogeny of the Megascolecidae and Crassiclitellata (Oligochaeta): combined versus partitioned analysis using nuclear (28S), mitochondrial (12S, 16S) rDNA. – Zoosystema 24: 707–734
   Google Scholar
• Jarman S. N. Deagle B. E. Gales N. J. (2004): Group-specific polymerase chain reaction for DNA-based analysis of species diversity and identity in dietary samples. – Molecular Ecology 13: 1313–1322
   Google Scholar
• Judas M. (1989): Predator-pressure on earthworms – field experiments in a Beechwood. – Pedobiologia 33: 339–354
   Google Scholar
• Koch J. M. (2007): Restoring a Jarrah forest understorey vegetation after bauxite mining in Western Australia. – Restoration Ecology 15: 26–39
   Google Scholar
• Lee K. E. (1959a): The earthworm fauna of New Zealand. – Wellington: New Zealand Department of Scientific and Industrial Research
   Google Scholar
• Lee K. E. (1959b): A Key for the Identification of New Zealand Earthworms. – Soil bureau publications 172: 13–60
   Google Scholar
• Lee K. E. (1985): Earthworms: Their Ecology and Relationships with Soils and Plant Growth. – Sydney: Academic Press
   Google Scholar
• Lyle E. S. (1987): Surface Mine Reclamation Manual. – New York: Elsevier Science Publishing
   Google Scholar
• Macdonald D. W. (19839: Predation on earthworms by terrestrial vertebrates. In: Satchell, JE, Earthworm Ecology, from Darwin to vermiculture. – London: Chapman & Hall Ltd., 393–414
   Google Scholar
• Pop A. A. Csuzdi Cs. Cech G. Wink M. Pop V. V. (2007): Application of 16s, 18s rDNA and COI sequences in the molecular systematics of the earthworm family Lumbricidae (Annelida, Oligochaeta). – European Journal of Soil Biology 43: 543–552
   Google Scholar
• Pop A. A. Wink M. Pop V. V. (2003): Use of 18s, 16s rDNA and Cytochrome C oxidase sequences in earthworm taxonomy (Oligochaeta, Lumbricidae). – Pedobiologia 47: 428–433
   Google Scholar
• Reid B. Ordish R. G. Harrison M. (19829: An analysis of the gizzard contents of 50 North Island brown kiwis, Apteryx australis mantelli, and notes on feeding observations. – New Zealand Journal of Ecology 5: 76–85
   Google Scholar
• Saitou N. Nei M. (1987): The neighbor-joining method: a new method for reconstructing phylogenetic trees. – Molecular Biology and Evolution 4: 406
   Google Scholar
• Sales J. (2005): The endangered kiwi: a review. – Folia Zoologica 54: 1–20
   Google Scholar
• Smyth C. R. Dearden P. (1998): Performance standards and monitoring requirements of surface coal mine reclamation success in mountainous jurisdictions of Western North America: a review. – Journal of Environmental Management 53: 209–229
   Google Scholar
• Snyder B. A. Hendrix P. F. (2008): Current and potential roles of soil macroinvertebrates (earthworms, millipedes, and isopods) in ecological restoration. – Restoration Ecology 16: 629–636
   Google Scholar
• Stockdill S. M. (1982): Effects of introduced earthworms on the productivity of New Zealand pastures. – Pedobiologia 24: 29–35
   Google Scholar
• Stringer I. A. Bassett S. M. McLean M. J. McCartney J. Parrish G. R. (2003): Biology and conservation of the rare New Zealand land snail Paryphanta busbyi watti (Mollusca, Pulmonata). – Invertebrate Biology 122: 241–251
   Google Scholar
• Symondson W. O. (2002): Molecular identification of prey in predator diets. – Molecular Ecology 11: 627–641
   Google Scholar
• Symondson W. O. Zaidi R. Jaal Z. Hawkes N. Hemingway J. (1999): Can multiple-copy sequences of prey DNA be detected amongst the gut contents of invertebrate predators? – Molecular Ecology 8: 2081–2087
   Google Scholar
• Tamura K. Dudley J. Nei M. Kumar S. (2007): MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. – Molecular Biology and Evolution 24: 15–96
   Google Scholar
• Walker K. J. Trewick S. A. Barker G. M. (2008): Powelliphanta augusta, a new species of land snail, with a description of its former habitat, Stockton coal plateau, New Zealand. – Journal of the Royal Society of New Zealand 38: 163–186
   Google Scholar
• Xi-jun Zhao-hua M.L. Jian-long C. (2008): Ecological risk assessment of open coal mine area. – Environmental Monitoring and Assessment 147: 471–481
   Google Scholar
• Yeates G. W. (2007): Mt Augustus Ridgeline – Faecal analysis of Stockton snails. Landcare Research Contract Report: LC0708/15 Prepared for Solid Energy. – Palmerston North, New Zealand: Land-care Research
   Google Scholar