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Osteichthyes

Phylogeography of the genus Chondrostoma Agassiz, 1835 (Teleostei: Leuciscidae) in Anatolia, as inferred from mitochondrial DNA analysis

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Pages 206-221 | Received 15 Jan 2020, Accepted 21 Jun 2020, Published online: 22 Jul 2020

References

  • Akaike, H. (1974). A new look at the statistical model identification. IEEE Transactions on Automatic Control, 19, 716–723. doi: 10.1109/TAC.1974.1100705
  • Banarescu, P. (1989). Vicariant pattern and dispersal in European freshwater fishes. Spixiana, 12, 91–103.
  • Banarescu, P. (1990). Zoogeography of fresh waters. Wiesbaden: Aula-Verlag.
  • Berg, L. S. (1949). Freshwater fishes of the USSR and adjacent countries. Jerusalem: Israel program for scientific translations.
  • Bektaş, Y., Turan, D., Aksu, I., Çiftci, Y., Eroğlu, O., Kalaycı, G., & Beldüz, A. O. (2017). Molecular phylogeny of the genus Capoeta (Teleostei: Cyprinidae) in Anatolia, Turkey. Biochemical Systematics and Ecology, 70, 80–94. doi: 10.1016/j.bse.2016.11.005
  • Bianco, P.G. (1990). Potential role of the palaeohistory of the Mediterranean and Paratethis basins on the early dispersal of Euro-Mediterranean freshwater fishes. Ichthyological Exploration of Freshwaters, 1, 167–184.
  • Bogutskaya, N. G. (1997). Chondrostoma beysehirense, a new cyprinid fish from Beyşehir Lake, Central Turkey. Ichthyological Exploration of Freshwaters, 8, 151–158.
  • Bouckaert, R., Vaughan, T. G., Barido-Sottani, J., Duchêne, S., Fourment, M., Gavryushkina, A., … & Matschiner, M. (2019). BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology, 15, e1006650. doi: 10.1371/journal.pcbi.1006650
  • Böhme, M., & Ilg, A. (2003). Database of Vertebrates: fossil Fishes, Amphibians, Reptiles and Birds (fosFAR-base) localities and taxa from the Triassic to the Neogene. www.wahre-staerke.com. Downloaded on 2.10.2019.
  • Çiçek, E., Birecikligil, S. S., & Fricke, R. (2016). Addenda and errata of: Freshwater fishes of Turkey: a revised and updated annotated checklist. FishTaxa, 1, 116–117.
  • Çiçek, E., Fricke, R., Sungur, S., & Eagderi, S. (2018). Endemic freshwater fishes of Turkey. FishTaxa, 3, 1–39.
  • Coelho, M. M., Alves, M. J., Collares-Pereira, M. J., & Matson, R. (1997). Allozyme assessment of the phylogenetic relationships of the Iberian species Chondrostoma lemmingii and C. lusitanicum (Pisces: Cyprinidae). Folia Zoologica, 46, 15–26.
  • Collares-Pereira, M. J. (1980). Contribution to the knowledge of the Iberian cyprinid Chondrostoma lemmingii (Steind., 1866) and its affinities with Chondrostoma arrigonis (Steind., 1866). Arquivos do Museu Bocage, 7, 151–177.
  • Daştan, S. D., Bardakçı, F., & Değerli, N. (2012). Genetic diversity of Cyprinion macrostomus Heckel, 1843 (Teleostei: Cyprinidae) in Anatolia. Turkish Journal of Fisheries and Aquatic Sciences, 12, 651–659. doi: 10.4194/1303-2712-v12_3_13
  • Doadrio, I., & Carmona, J. A. (2004). Phylogenetic relationships and biogeography of the genus Chondrostoma inferred from mitochondrial DNA sequences. Molecular Phylogenetics and Evolution, 33, 802–815. doi: 10.1016/j.ympev.2004.07.008
  • Durand, J. D., Bianco, P. G., Laroche, J., & Gilles, A. (2003). Insight into the origin of endemic Mediterranean ichthyofauna: phylogeography of Chondrostoma genus (Teleostei, Cyprinidae). Journal of Heredity, 94, 315–328. doi: 10.1093/jhered/esg074
  • Durand, J. D., Erhan, Ü., Doadrio, I., Pipoyan, S., & Templeton, A. R. (2000). Origin, radiation, dispersion and allopatric hybridization in the chub Leuciscus cephalus. Proceedings of the Royal Society of London. Series B: Biological Sciences, 267, 1687–1697. doi: 10.1098/rspb.2000.1196
  • Durand, J. D., Tsigenopoulos, C. S., Ünlü, E., & Berrebi, P. (2002). Phylogeny and biogeography of the family Cyprinidae in the Middle East inferred from cytochrome b DNA evolutionary significance of this region. Molecular Phylogenetics and Evolution, 22, 91–100. doi: 10.1006/mpev.2001.1040
  • Durand, J. D., Persat, H., & Bouvet, Y. (1999). Phylogeography and postglacial dispersion of the chub (Leuciscus cephalus) in Europe. Molecular Ecology, 8, 989–997. doi: 10.1046/j.1365-294x.1999.00654.x
  • Economidis, P.S., & Banarescu, P. (1991). The distribution and origin of freshwater fishes in the Balkan Peninsula, especially in Greece. Internationale Revue der gesamten Hydrobiologie und Hydrographie, 76, 257–283. doi: 10.1002/iroh.19910760209
  • Elvira, B. (1987). Taxonomic revision of the genus Chondrostoma Agassiz, 1835 (Pisces, Cyprinidae). Cybium, 11, 111–149.
  • Elvira, B. (1997). Taxonomy of the genus Chondrostoma (Osteichthyes, Cyprinidae): an updated review. Folia Zoologica, 46 (Supplementum 1), 1–14.
  • Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783–791. doi: 10.1111/j.1558-5646.1985.tb00420.x
  • Freyhof, J., Ekmekçi, F. G., Ali, A., Khamees, N. R., Özuluğ, M., Hamidan, N., … & Smith, K. G. (2014). Freshwater fishes: The Status and Distribution of Freshwater Biodiversity in the Eastern Mediterranean. Cambridge (UK), & Malaga (Spain) and Gland (Switzerland): IUCN.
  • Güçlü, S. S., Küçük, F., Turan, D., Çiftçi, Y., & Mutlu, A. G. (2018). A new Chondrostoma species from the Büyük Menderes River Basin, Turkey (Teleostei: Cyprinidae). Zoology in the Middle East, 64, 315–321. doi: 10.1080/09397140.2018.1511293
  • Guindon, S., & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology, 52, 696–704. doi: 10.1080/10635150390235520
  • Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic acids symposium series, 41, 95– 98.
  • Hall, B. G. (2004). Phylogenetic trees made easy: a how-to manual. Sunderland (MA): Sinauer.
  • Holčík, J., & Jedlička, L. (1994). Geographical variation of some taxonomically important characters in fishes: the case of the bitterling Rhodeus sericeus. Environmental Biology of Fishes, 41, 147–170. doi: 10.1007/BF02197842
  • Holčík, J., & de Wit, J. D. (1962). The taxonomic characteristics of hybrid Rhodeus. Copeia, 777–788. doi: 10.2307/1440679
  • Howes, G. J. (1991). Systematics and biogeography: an overview. Pp. 1–33. In: I. J. WinWeld & J. S. Nelson (Eds), Cyprinid Fishes. Dordrecht: Springer.
  • Hrbek, T., Küçük, F., Frickey, T., Stölting, K. N., Wildekamp, R. H., & Meyer, A. (2002). Molecular phylogeny and historical biogeography of the Aphanius (Pisces, Cyprinodontiformes) species complex of central Anatolia, Turkey. Molecular Phylogenetics and Evolution, 25, 125–137. doi: 10.1016/S1055-7903(02)00203-8
  • Huson, D. H., & Bryant, D. (2006). Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution, 23, 254–267. doi: 10.1093/molbev/msj030
  • Kimura, M. (1980). A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111–120. doi: 10.1007/BF01731581
  • Köhler, C. (1992). Morphologische Untersuchungen zur intraspezifischen Variabilität des Rotauges, Rutilus rutilus (L.), aus dem Rhein. Fischökologie, 6, 43–67.
  • Kottelat, M. (1997). European freshwater fishes. An heuristic checklist of the freshwater fishes of Europe (exlusive of former USSR), with an introduction for nonsystematics and comments on nomenclature and conservation. Biologia (Bratislava), 52 (Supplementum 5), 1–271.
  • Kottelat, M., & Freyhof, J. (2007). Handbook of European freshwater fishes. Berlin: Kottelat, Cornol and Freyhof.
  • Krijgsman, W., Hilgen, F. J., Raffi, I., Sierro, F. J., & Wilson, D. S. (1999). Chronology, causes and progression of the Messinian salinity crisis. Nature, 400, 652–655. doi: 10.1038/23231
  • Küçük, F., Gülle, İ., Güçlü, S. S., Çiftçi, Y., & Erdoğan, Ö. (2013). A new Pseudophoxinus (Teleostei, Cyprinidae) species from Southwestern Anatolia, with remarks on the distribution of the genus in Western Anatolia. Zookeys, 320, 29–41. doi: 10.3897/zookeys.320.4447
  • Küçük, F., Turan, D., Güçlü, S. S., Mutlu, A. G., & Çiftci, Y. (2017). Two new species of Chondrostoma Agassiz, 1832 (Teleostei: Cyprinidae) from the Ceyhan, Seyhan and Göksu rivers in the East Mediterranean region of Turkey. Turkish Journal of Fisheries and Aquatic Sciences, 17, 795–803. doi: 10.4194/1303-2712-v17_4_15
  • Küçük, F., Turan, D., Güçlü, S. S., Çiftci, Y. & Freyhof, J. (2020). Chondrostoma smyrnae, a new nase from the from Tahtalı River drainage in the Aegean Sea basin (Teleostei: Leuciscidae). Zootaxa ( in press).
  • Kumar, S., Stecher, G., Li, M., Knyaz, C., & Tamura, K. (2018). MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35, 1547–1549. doi: 10.1093/molbev/msy096
  • Kuru, M. (1981). Revision of Chondrostoma species of Turkey. Hacettepe Bulletin of Natural Sciences and Engineering, 10, 111–121.
  • Kuru, M., Yerli, S., Mangıt, F., Ünlü, E., & Alp, A. (2014). Fish biodiversity in inland waters of Turkey. Journal of Academic Documents for Fisheries and Aquaculture, 1, 93–120.
  • Libosvarsky, J., & Ruban, G. I. (1985). In search of morphometric deviations in roach from heated waters. Folia Zoologica, 34, 267–278.
  • Librado, P., & Rozas, J. (2009). DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451–1452. doi: 10.1093/bioinformatics/btp187
  • Machordom, A., & Doadrio, I. (2001). Evidence of a Cenozoic Betic–Kabilian connection based on freshwater fish phylogeography (Luciobarbus, Cyprinidae). Molecular Phylogenetics and Evolution, 18, 252–263. doi: 10.1006/mpev.2000.0876
  • Nei, M. (1987). Molecular evolutionary genetics. New York: Columbia University Press.
  • Page, R. D. (1996). Tree View: An application to display phylogenetic trees on personal computers. Bioinformatics, 12, 357–358. doi: 10.1093/bioinformatics/12.4.357
  • Perea, S., Böhme, M., Zupančič, P., Freyhof, J., Šanda, R., Özuluğ, M., … & Doadrio, I. (2010). Phylogenetic relationships and biogeographical patterns in CircumMediterranean subfamily Leuciscinae (Teleostei, Cyprinidae) inferred from both mitochondrial and nuclear data. BMC Evolutionary Biology, 10, 265. doi: 10.1186/1471-2148-10-265
  • Pereira, N. D. C. (1995). The freshwater fishes of the Iberian Peninsula. Arquivos do Museu Bocage, Nova Série II, 30, 473–538.
  • Posada, D. (2008). jModelTest: phylogenetic model averaging. Molecular Biology and Evolution, 25, 1253–1256. doi: 10.1093/molbev/msn083
  • Rambaut, A., Drummond, A. J., Xie, D., Baele, G., & Suchard, M. A. (2018). Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Systematic Biology, 67, 901. doi: 10.1093/sysbio/syy032
  • Rambaut, A. (2018). FigTree v1. 4.2, a graphical viewer of phylogenetic trees. http://tree.bio.ed.ac.uk/software/figtree. Downloaded on xxx
  • Robalo, J. I., Almada, V. C., Levy, A., & Doadrio, I. (2007). Re-examination and phylogeny of the genus Chondrostoma based on mitochondrial and nuclear data and the definition of 5 new genera. Molecular Phylogenetics and Evolution, 42, 362–372. doi: 10.1016/j.ympev.2006.07.003
  • Robalo, J., Almada, V., Santos, C., Moreira, M. I., & Doadrio, I. (2005). New species of the genus Chondrostoma Agassiz, 1832 (Actynopterigii, Cyprinidae) from western Portugal. Graellsia, 61, 19–29. doi: 10.3989/graellsia.2005.v61.i1.3
  • Sanjur, O. I., Carmona, J. A., & Doadrio, I. (2003). Evolutionary and biogeographical patterns within Iberian populations of the genus Squalius inferred from molecular data. Molecular Phylogenetics and Evolution, 29, 20–30. doi: 10.1016/S1055-7903(03)00088-5
  • Sousa-Santos, C., Jesus, T. F., Fernandes, C., Robalo, J. I., & Coelho, M. M. (2019). Fish diversification at the pace of geomorphological changes: evolutionary history of western Iberian Leuciscinae (Teleostei: Leuciscidae) inferred from multilocus sequence data. Molecular Phylogenetics and Evolution, 133, 263–285. doi: 10.1016/j.ympev.2018.12.020
  • Schwarz, G. (1978). Estimating the dimension of a model. The Annals of Statistics, 6, 461–464. doi: 10.1214/aos/1176344136
  • Swofford, D. L. (1998). PAUP* Phylogenetic Analysis Using Parsimony (*and other methods). Version 4 beta 10. Sunderland (MA): Sinauer.
  • Tarkan, A. S., Marr, S. M., & Ekmekçi, F. G. (2015). Non-native and translocated freshwater fish species in Turkey. FiSHMED Fishes in Mediterranean Environments, 2015, 1–28.
  • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 25, 4876–4882. doi: 10.1093/nar/25.24.4876
  • Yıldırım, C., Schildgen, T. F., Echtler, H., Melnick, D., & Strecker, M. R. (2011). Late Neogene and active orogenic uplift in the Central Pontides associated with the North Anatolian Fault: Implications for the northern margin of the Central Anatolian Plateau, Turkey. Tectonics, 30, 1–24. doi: 10.1029/2010TC002756
  • Yoğurtçuoğlu, B., & Ekmekçi, F. G. (2018). First Record of the Giant Pangasius, Pangasıus sanitwongsei (Actinopterygi: Siluriformes: Pangaiidae), from Central Anatolia, Turkey. Acta Ichthyologica et Piscatoria, 48, 241–244. doi: 10.3750/AIEP/02407
  • Zardoya, R., & Doadrio, I. (1998). Phylogenetic relationships of Iberian cyprinids: systematic and biogeographical implications. Proceedings of the Royal Society of London, Series B: Biological Sciences, 265, 1365–1372. doi: 10.1098/rspb.1998.0443
  • Zardoya, R., & Doadrio, I. (1999). Molecular evidence on the evolutionary and biogeographical patterns of European cyprinids. Journal of Molecular Evolution, 49, 227– 237. doi: 10.1007/PL00006545

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