Use of a DNA film on a self-assembled monolayer for investigating the physical process of DNA damage induced by core electron ionization

References

• Alizadeh E, Cloutier P, Hunting D, Sanche L. 2011. Soft X-ray and low energy electron-induced damage to DNA under N2 and O2 atmospheres. J Phys Chem B. 115:4523–4531.
   PubMed Web of Science ®Google Scholar
• Bernhard WA. Close DM. 2004. DNA damage dictate the biological consequences of ionizing irradiation: the chemical pathways. In: Mozumder M, Hatano Y, editors. Charged particle and photon interactions with matter chemical, physicochemical and biological consequences with applications. New York: Marcel Dekker. pp. 431–470.
   Google Scholar
• Cai Z, Cloutier P, Hounting D, Sanche L. 2005. Comparison between X-ray photon and secondary electron damage to DNA in vacuum. J Phys Chem B. 109:4796–4800.
   PubMed Web of Science ®Google Scholar
• Chauvistré R, Hormes J, Hartmann E, Etzenbach N, Hosch R, Hahn J. 1997. Sulfur K-shell photoabsorption spectroscopy of the sulfanes R-Sn-R, n = 2–4. Chem Phys. 223:293–302.
   Web of Science ®Google Scholar
• Chrisey LA, Lee GU, O’Ferrall CE. 1996. Covalent attachment of synthetic DNA to self-assembled monolayer films. Nucleic Acids Res. 24:3031–3039.
   PubMed Web of Science ®Google Scholar
• Demirel G, Çağlayan MO, Garipcan B, Pişkin E. 2008. A novel DNA biosensor based on ellipsometry. Surf Sci. 602:952–959.
   Web of Science ®Google Scholar
• Egerton RF. 2011. Electron energy-loss spectroscopy in the electron microscope. Berlin: Springer.
   Google Scholar
• Escosura-Muñiz A, Espinoza-Castañeda M, Hasegawa M, Philippe L, Merkoçi A. 2015. Nanoparticles-based nanochannels assembled on a plastic flexible substrate for label-free immunosensing. Nano Res. 8:1180–1188.
   Web of Science ®Google Scholar
• Fujii K, Akamatsu K, Muramatsu Y, Yokoya A. 2003. X-ray absorption near edge structure of DNA bases around oxygen and nitrogen K-edge. Nucl Instrum Meth Phys Res B. 199:249–254.
   Web of Science ®Google Scholar
• Fujii K, Shikazono N, Yokoya A. 2009. Nucleobase lesions and strand breaks in dry DNA thin film selectively induced by monochromatic soft X-rays. J Phys Chem B. 113:16007–16015.
   PubMed Web of Science ®Google Scholar
• Fujii K, Yokoya A. 2009. Spectral change in X-ray absorption near edge structure of DNA thin films irradiated with monochromatic soft X-rays. Rad Phys Chem. 78:1188–1191.
   Web of Science ®Google Scholar
• Honda M, Baba Y, Hirao N, Sekiguchi T. 2008. Metal-molecular interface of sulfur-containing amino acid and thiophene on gold surface. J Phys Conf Ser. 100:052071.
   Google Scholar
• Hieda K, Ito T. 1991. Radiobiological experiments in the X-ray region with synchrotron radiation. In: Ebashi S, Koch M, Rubenstein E, editors. Handbook on synchrotron radiation. Amsterdam: North-Holland. pp. 431–465.
   Google Scholar
• Konishi H, Yokoya A, Shiwaku H, Motohashi H, Makita T, Kashihara Y, Hashimoto S, Haramia T, Sasaki TA, Maeta H, et al. 1996. Synchrotron radiation beamline to study radioactive materials at the Photon Factory. Nucl Instrum Meth Phys Res A. 372:322–332.
   Web of Science ®Google Scholar
• Kuhn H, Möbius D. 1971. Systems of monomolecular layers – assembling and physico-chemical behavior. Angew Chem Int Ed. 10:620–637.
   Web of Science ®Google Scholar
• Kurihara K. 2015. Self-assembled monolayer. In: Kobayashi S, Müllen K, editors. Encyclopedia of polymeric nanomaterials. Berlin: Springer. pp. 2187–2189.
   Google Scholar
• Lenigk R, Carles M, Ip NY, Sucher NJ. 2001. Surface characterization of a silicon-chip-based DNA microarray. Langmuir. 17:2497–2501.
   Web of Science ®Google Scholar
• Mauri S, Volk M, Byard S, Berchtold H, Arnolds H. 2015. Stabilization of insulin by adsorption on a hydrophobic silane self-assembled monolayer. Langmuir. 31:8892–8900.
   PubMed Web of Science ®Google Scholar
• Narita A, Baba Y, Sekiguchi T, Shimoyama I, Hirao N, Yaita T. 2012. Anchoring of alkyl chain molecules on oxide surface using silicon alkoxide. Appl Surf Sci. 258:2034–2037.
   Web of Science ®Google Scholar
• O’Neill P, Fielden EM. 1993. Primary free radical processes in DNA. Adv Radiat Biol. 17:53–120.
   Google Scholar
• Ptasińska S, Stypczyńska A, Nixon T, Mason NJ, Klyachko DV, Sanche L. 2008. X-ray induced damage in DNA monitored by X-ray photoelectron spectroscopy. J Chem Phys. 129:065102.
   Google Scholar
• Raza H, Harte SP, Muryn CA, Wincott PL, Thornton G, Casanova R, Rodriguez A. 1996. NEXAFS studies of the reaction of SO2 with TiO2(100)-(1 × 1) and -(1 × 3). Surf Sci. 366:519–530.
   Web of Science ®Google Scholar
• Saitoh Y, Fukuda Y, Takeda Y, Yamagami H, Takahashi S, Asano Y, Hara T, Shirasawa K, Takeuchi M, Tanaka T, et al. 2012. Performance upgrade in the JAEA actinide science beamline BL23SU at Spring-8 with a new twin-helical undulator. J Synchrotron Radiat. 19:388–393.
   PubMed Web of Science ®Google Scholar
• Scofield JH. 1973. Theoretical photoionization cross section from 1 to 3000 eV. California: Lawrence Livermore Laboratory.
   Google Scholar
• Seah MP, Dench WA. 1979. Quantitative electron spectroscopy of surfaces: A standard data base for electron inelastic mean free paths in solids. Surf Interface Anal. 1:2–11.
   Google Scholar
• Tyagi M, Chandran A, Joshi T, Prakash J, Agrawal VV, Biradar AM. 2014. Self assembled monolayer based liquid crystal biosensor for free cholesterol detection. Appl Phys Lett. 104:154104.
   Web of Science ®Google Scholar
• Wagner CD. 1978. X-ray photoelectron spectroscopy with x-ray photons of higher energy. J Vac Sci Technol. 15:518–523.
   Web of Science ®Google Scholar
• Yokoya A, Fujii K, Ushigome T, Shikazono N, Urushibara A, Watanabe R. 2006. Yields of strand breaks and base lesions induced by soft X-rays in plasmid DNA. Radiat Prot Dosim. 122:86–88.
   PubMed Web of Science ®Google Scholar
• Yokoya A, Shikazono N, Fujii K, Urushibara A, Akamatsu K, Watanabe R. 2008. DNA damage induced by the direct effect of radiation. Radiat Phys Chem. 77:1280–1285.
   Web of Science ®Google Scholar
• Zubavichus Y, Fuchs O, Weinhardt L, Heske C, Umbach E, Denlinger JD. 2004a. Soft-X-ray induced decomposition of amino acids: an XPS, mass spectrometry, and NEXAFS study. Radiat Res. 161:346–458.
   PubMed Web of Science ®Google Scholar
• Zubavichus Y, Zharnikov M, Shaporenko A, Fuchs O, Weinhardt L, Heske C, Umbach E, Denlinger JD, Grunze M. 2004b. Soft X-ray induced decomposition of phenylalanine and tyrosine: A comparative study. J Phys Chem. 108:4557–4565.
   Web of Science ®Google Scholar