2-heptanone and 2,3-butanediol from endophytic Bacillus subtilis GEB-1 against root-knot nematode, Meloidogyne enterolobii: a computational and experimental approach

References

• Abdullah, M. M., Khan, A., Albargi, H. B., Ahmad, M. Z., Ahmad, J., Ahmad, F., & Algethami, J. S. (2023). Ipomoea carnea associated phytochemicals and their in silico investigation towards meloidogyne incognita. Acta Agriculturae Scandinavica, Section B—Soil & Plant Science, 73(1), 74–87.
   Web of Science ®Google Scholar
• Abebew, D., Sayedain, F. S., Bode, E., & Bode, H. B. (2022). Uncovering nematicidal natural products from xenorhabdus bacteria. Journal of Agricultural and Food Chemistry, 70(2), 498–506.
   PubMed Web of Science ®Google Scholar
• Adnani, N., Chevrette, M. G., Adibhatla, S. N., Zhang, F., Yu, Q., Braun, D.R., Nelson, J., Simpkins, S. W., McDonald, B. R., Myers, C. L., Piotrowski, J. S., Thompson, C. J., Currie C. R., Li, L., Rajski, S. R., & Bugni, T. S. (2017). Coculture of marine invertebrate-associated bacteria and interdisciplinary technologies enable biosynthesis and discovery of a new antibiotic, keyicin. ACS Chemical Biology, 12(12), 3093–3102.
   PubMed Web of Science ®Google Scholar
• Aissani, N., Tedeschi, P., Maietti, A., Brandolini, V., Garau, V. L., & Caboni, P. (2013). Nematicidal activity of allylisothiocyanate from horseradish (Armoracia rusticana) roots against Meloidogyne incognita. Journal of Agricultural and Food Chemistry, 61(20), 4723–4727.
   PubMed Web of Science ®Google Scholar
• Aloo, B. N., Makumba, B. A., & Mbega, E. R. (2019). The potential of bacilli rhizobacteria for sustainable crop production and environmental sustainability. Microbiological Research, 219, 26–39.
   PubMed Web of Science ®Google Scholar
• Ayaz, M., Ali, Q., Farzand, A., Khan, A. R., Ling, H., & Gao, X. (2021a). Nematicidal volatiles from bacillus atrophaeus GBSC56 promote growth and stimulate induced systemic resistance in tomato against meloidogyne incognita. International Journal of Molecular Sciences, 22(9), 5049.
   PubMed Web of Science ®Google Scholar
• Ayaz, M., Ali, Q., Farzand, A., Khan, A. R., Ling, H., & Gao, X. (2021b). Nematicidal volatiles from bacillus atrophaeus GBSC56 promote growth and stimulate induced systemic resistance in tomato against Meloidogyne incognita. International Journal of Molecular Sciences, 22(9), 5049.
   PubMed Web of Science ®Google Scholar
• Baek, M., DiMaio, F., Anishchenko, I., (2021). Accurate prediction of protein structures and interactions using a three-track neural network. Science 373(6557), 871–876.
   PubMed Web of Science ®Google Scholar
• Bienert, S., Waterhouse, A., De Beer, T. A., Tauriello, G., Studer, G., Bordoli, L., & Schwede, T. (2017). The SWISS-MODEL repository - new features and functionality. Nucleic Acids Research, 45(D1), D313–D319.
   PubMed Web of Science ®Google Scholar
• Bishopp, A., Help, H., & Helariutta, Y. (2009). Cytokinin signaling during root development. International Review of Cell and Molecular Biology, 276, 1–48.
   PubMed Web of Science ®Google Scholar
• Bui, H. X., Hadi, B. A., Oliva, R., & Schroeder, N. E. (2020). Beneficial bacterial volatile compounds for the control of root-knot nematode and bacterial leaf blight on rice. Crop Protection, 135, 104792.
   Web of Science ®Google Scholar
• Castagnone-sereno, P. (2012). Meloidogyne enterolobii ( =  M. Mayaguensis): profile of an emerging, highly pathogenic, root-knot nematode species. Nematology, 14(2), 133–138.
   Web of Science ®Google Scholar
• Castagnone-sereno, P., & Castillo, P. (2014). Meloidogyne enterolobii (Pacara earpod tree root-knot nematode).
   Google Scholar
• Cheng, W., Yang, J., Nie, Q., Huang, D., Yu, C., Zheng, L., … & Zhang, J. (2017). Volatile organic compounds from paenibacillus polymyxa KM2501-1 control meloidogyne incognita by multiple strategies. Scientific Reports, 7(1), 16213.
   PubMedGoogle Scholar
• Collett, R. L., Marais, M., Daneel, M., Rashidifard, M., & Fourie, H. (2021). Meloidogyne enterolobii,a threat to crop production with particular reference to sub-saharan Africa: An extensive, critical and updated review. Nematology, 23(3), 247–285.
   Web of Science ®Google Scholar
• Collett, R. L., Rashidifard, M., Marais, M., Daneel, M., & Fourie, H. (2024). Insights into the life-cycle development of Meloidogyne enterolobii, M. incognita and M. javanica on tomato, soybean and maize. European Journal of Plant Pathology, 168(1), 137–146.
   Web of Science ®Google Scholar
• Cui, L., Yang, C., Wei, L., Li, T., & Chen, X. (2020). Isolation and identification of an endophytic bacteria bacillus velezensis 8-4 exhibiting biocontrol activity against potato scab. Biological Control, 141, 104156.
   Web of Science ®Google Scholar
• Cutler, S. R., Rodriguez, P. L., Finkelstein, R. R., & Abrams, S. R. (2010). Abscisic acid: Emergence of a core signaling network. Annual Review of Plant Biology, 61(1), 651–679.
   PubMedGoogle Scholar
• De Vrieze, M., Pandey, P., Bucheli, T. D., Varadarajan, A. R., Ahrens, C. H., Weisskopf, L., & Bailly, A. (2015). Volatile organic compounds from native potato-associated pseudomonas as potential anti-oomycete agents. Frontiers in Microbiology, 6, 1295. 1–15.
   PubMed Web of Science ®Google Scholar
• Fira, D., Dimki, c. I., Beri´c, T., Lozo, J., & Stankovi´c, S. (2018). Biological control of plant pathogens by bacillus species. Journal of Biotechnology, 285, 44–55.
   PubMed Web of Science ®Google Scholar
• Ganeshan, S., Annaiyan, S., Haran, R., Jayakanthan, M., Prabhu, S., Shanmugam, H., Kathithachalam, A., & Arun, A. (2024). Exploiting the nematicidal compounds from guava endo microbiome against root-knot nematodes, Meloidogyne enterolobii. Physiological and Molecular Plant Pathology, 131, 102268 .
   Web of Science ®Google Scholar
• Gao, H., Qi, G., Yin, R., Zhang, H., Li, C., & Zhao, X. (2016). Bacillus cereus strain S2 shows high nematicidal activity against meloidogyne incognita by producing sphingosine. Scientific Reports, 6(1), 1–11.
   PubMedGoogle Scholar
• Gao, Z., Zhang, B., Liu, H., Han, J., & Zhang, Y. (2017). Identification of endophytic bacillus velezensis ZSY-1 strain and antifungal activity of its volatile compounds against alternaria solani and botrytis cinerea. Biological Control, 105, 27–39.
   Web of Science ®Google Scholar
• Geng, C., Nie, X., Tang, Z., Zhang, Y., Lin, J., Sun, M., & Peng, D. (2016). A novel serine protease, Sep1, from bacillus firmus DS-1 has nematicidal activity and degrades multiple intestinal-associated nematode proteins. Scientific Reports, 6(1), 1–12.
   PubMed Web of Science ®Google Scholar
• Haegeman, A., Mantelin, S., Jones, J. T., & Gheysen, G. (2012). Functional roles of effectors of plant-parasitic nematodes. Gene, 492(1), 19–31.
   PubMed Web of Science ®Google Scholar
• Huang, D., Yu, C., Shao, Z., Cai, M., Li, G., Zheng, L., Yu, Z., & Zhang, J. (2020). Identification and characterization of nematicidal volatile organic compounds from deep-sea Virgibacillus dokdonensis MCCC 1A00493. Molecules, 25(3), 744.
   PubMed Web of Science ®Google Scholar
• Hussey, R.S., Janssen, G.J.W. (2002). Root-knot nematodes: Meloidogyne species (43–70). CABI Publishing. https://doi.org/10.1079/9780851994666.0043
   Google Scholar
• Kai, M., & Piechulla, B. (2010). Impact of volatiles of the rhizobacteria serratia odorifera on the moss physcomitrella patens. Plant Signaling & Behavior, 5(4), 444–446.
   PubMedGoogle Scholar
• Kammerhofer, N., Radakovic, Z., Regis, J. M., Dobrev, P., Vankova, R., Grundler, F. M., Siddique, S., Hofmann, J., & Wieczorek, K. (2015). Role of stress-related hormones in plant defense during early infection of the cyst nematode heterodera schachtii in arabidopsis. New Phytologist, 207(3), 778–789.
   PubMed Web of Science ®Google Scholar
• Keerthiraj, M., Mandal, A., Dutta, T. K., Saha, S., Dutta, A., Singh, A., & Kundu, A. (2021). Nematicidal and molecular docking investigation of essential oils from Pogostemon cablin ecotypes against meloidogyne incognita. Chemistry & Biodiversity, 18(9), e2100320.
   PubMed Web of Science ®Google Scholar
• Keswani, C., Singh, H.B., García-Estrada, C., Caradus, J., He, Y.W., Mezaache-Aichour, S., Glare, T.R., Borriss, R., Sansinenea, E., 2020. Antimicrobial secondary metabolites from agriculturally important bacteria as next-generation pesticides. Applied Microbiology and Biotechnology, 104 (3), 1013–1034. 104:3.
   PubMed Web of Science ®Google Scholar
• Khalid, S., & Keller, N. P. (2021). Chemical signals driving bacterial–fungal interactions. Environmental Microbiology, 23(3), 1334–1347.
   PubMed Web of Science ®Google Scholar
• Khanna, V., & Ranganathan, S. (2011). In silico approach to screen compounds active against parasitic nematodes of major socio-economic importance. BMC Bioinformatics, 12(13), 1–12. BioMed Central.
   PubMedGoogle Scholar
• Khoja, S., Eltayef, K. M., Baxter, I., Myrta, A., Bull, J. C., & Butt, T. (2021). Volatiles of the entomopathogenic fungus, metarhizium brunneum, attract and kill plant parasitic nematodes. Biological Control, 152 (104472).
   PubMedGoogle Scholar
• Li, N., Pan, F. J., Han, X. Z., & Zhang, B. (2016). Development of soil food web of microbes and nematodes under different agricultural practices during the early stage of pedogenesis of a mollisol. Soil Biology and Biochemistry, 98, 208–216.
   Web of Science ®Google Scholar
• Lu, H., Xu, S., Zhang, W., Xu, C., Li, B., Zhang, D., Mu, W., & Liu, F. (2017). Nematicidal activity of trans-2-hexenal against southern root-knot nematode (meloidogyne incognita) on tomato plants. Journal of Agricultural and Food Chemistry, 65(3), 544–550.
   PubMed Web of Science ®Google Scholar
• Malagón, D., Benítez, R., Kašný, M., & Adroher, F. J. (2013). Peptidases in parasitic nematodes. A Review. Parasites: Ecology, Diseases and Management, 61–102.
   Google Scholar
• Molinari, S., Fanelli, E., & Leonetti, P. (2014). Expression of tomato salicylic acid (SA)-responsive pathogenesis-related genes in Mi-1-mediated and SA-induced resistance to root-knot nematodes. Molecular Plant Pathology, 15(3), 255–264.
   PubMed Web of Science ®Google Scholar
• Naveed, M., Ishfaq, H., Rehman, S. U., Javed, A., Waseem, M., Makhdoom, S. I., Aziz, T., Alharbi, M., Alshammari, A., & Alasmari, A. F. (2023). Gc–MS profiling of bacillus spp. Metabolites with an in vitro biological activity assessment and computational analysis of their impact on epithelial glioblastoma cancer genes. Frontiers in Chemistry, 11, 1–14.
   Web of Science ®Google Scholar
• Philbrick, A. N., Adhikari, T. B., Louws, F. J., & Gorny, A. M. (2020). Meloidogyne enterolobii, a major threat to tomato production: Current status and future prospects for its management. Frontiers in Plant Science, 11, 606395.
   PubMed Web of Science ®Google Scholar
• Rashidifard, M., Marais, M., Daneel, M. S., Mienie, C. M., & Fourie, H. (2019). Molecular characterisation of Meloidogyne enterolobii and other Meloidogyne spp. from South Africa. Tropical Plant Pathology, 44, 213–224.
   Web of Science ®Google Scholar
• Raza, W., Ling, N., Yang, L., Huang, Q., & Shen, Q. (2016). Response of tomato wilt pathogen Ralstonia solanacearum to the volatile organic compounds produced by a biocontrol strain Bacillus amyloliquefaciens SQR-9. Scientific Reports, 6(1), 1–13.
   PubMedGoogle Scholar
• Saravanan, R., Saranya, N., Ragapriya, V., Rajaswaminathan, V., Kavino, M., Krishnamoorthy, A. S., & Nakkeeran, S. (2022). Nematicidal property of clindamycin and 5-hydroxy-2-methyl furfural (HMF) from the banana endophyte Bacillus velezensis (YEBBR6) against banana burrowing nematode radopholus similis. Indian Journal of Microbiology, 62(3), 364–373.
   PubMed Web of Science ®Google Scholar
• Shandeep, G., Annaiyan, S., Somasundaram, P., Mannu, J., Kathithachalam, A., Shanmugam, H., & Arunchalam, A. (2023). Biomolecule repository of endophytic bacteria from guava serves as a key player in suppressing root-knot nematode, meloidogyne enterolobii. Scientia Horticulturae, 324 112627.
   Web of Science ®Google Scholar
• Singh, B. P., Rateb, M. E., Rodriguez-Couto, S., Teixeira de Moraes Polizeli, M. L., & Li, W.-J. (2019). Editorial: Microbial secondary metabolites: Recent developments and technological challenges. Frontiers in Microbiology, 10, 914.
   PubMed Web of Science ®Google Scholar
• Song, G. C., & Ryu, C. M. (2013). Two volatile organic compounds trigger plant self-defense against a bacterial pathogen and a sucking insect in cucumber under open field conditions. International Journal of Molecular Sciences, 14(5), 9803–9819.
   PubMed Web of Science ®Google Scholar
• Tahir, H. A., Gu, Q., Wu, H., Raza, W., Hanif, A., Wu, L., & Gao, X. (2017). Plant growth promotion by volatile organic compounds produced by bacillus subtilis SYST2. Frontiers in Microbiology, 8, 171.
   PubMed Web of Science ®Google Scholar
• Tai, W., He, L., Zhang, X., Pu, J., Voronin, D., Jiang, S., & Du, L. (2020). Characterization of the receptor-binding domain (RBD) of 2019 novel coronavirus: Implication for development of RBD protein as a viral attachment inhibitor and vaccine. Cellular & Molecular Immunology, 17(6), 613–620.
   PubMed Web of Science ®Google Scholar
• Taylor, D. (2015). The pharmaceutical industry and the future of drug development. Royal Society of Chemistry.
   Google Scholar
• Veronico, P., Sasanelli, N., Troccoli, A., Myrta, A., Midthassel, A., & Butt, T. (2023). Evaluation of fungal volatile organic compounds for control the plant parasitic nematode Meloidogyne incognita. Plants, 12(10), 1935.
   Google Scholar
• Vijay, S., Renukadevi, P., & Mangammal, P. (2023). Investigations on black root rot disease of mulberry caused by Lasiodiplodia theobromae. Archives of Phytopathology and Plant Protection, 56(7), 587–603.
   Web of Science ®Google Scholar
• Wicaksono, W. A., Jones, E. E., Casonato, S., Monk, J., & Ridgway, H. J. (2018). Biological control of Pseudomonas syringae pv. actinidiae (Psa), the causal agent of bacterial canker of kiwifruit, using endophytic bacteria recovered from a medicinal plant. Biological control, 116, 103–112.
   Web of Science ®Google Scholar
• Wolstenholme, A. J. (2011). Ion channels and receptor as targets for the control of parasitic nematodes. International Journal for Parasitology: Drugs and Drug Resistance, 1(1), 2–13.
   PubMed Web of Science ®Google Scholar
• Yang, T., Xin, Y., Liu, T., Li, Z., Liu, X., Wu, Y., Wang Mingfeng, Xiang, M. (2022). Bacterial volatile-mediated suppression of root-knot nematode (meloidogyne incognita). Plant Disease, 106(5), 1358–1365.
   PubMed Web of Science ®Google Scholar
• Yang, X., Khan, S., Zhao, X., Khan, S., Zhao, X., Zhang, J., Nisar, A., & Feng, X. (2020). Suppression of hyaluronidase reduces invasion and establishment of Haemonchus contortus larvae in sheep. Veterinary Research, 51(106).
   Google Scholar
• Zhai, Y., Shao, Z., Cai, M., Zheng, L., Li, G., Huang, D., Cheng, W., Thomashow, L. S., Weller, D. M., Yu, Z., & Zhang, J. (2018). Multiple modes of nematode control by volatiles of Pseudomonas putida 1A00316 from Antarctic soil against Meloidogyne incognita. Frontiers in Microbiology, 9(253).
   Google Scholar
• Zhang, Y., Li, S., Li, H., Wang, R., Zhang, K. Q., & Xu, J. (2020). Fungi–nematode interactions: Diversity, ecology, and biocontrol prospects in agriculture. Journal of Fungi, 6(4), 206–230.
   Web of Science ®Google Scholar
• Zou, C., Li, Z., & Yu, D. (2010). Bacillus megaterium strain XTBG34 promotes plant growth by producing 2-pentylfuran. The Journal of Microbiology, 48(4), 460.
   PubMed Web of Science ®Google Scholar