Systematic degradation process of petroleum hydrocarbons by an integrated bacterial consortium under bottom seawater and surface seawater environments

References

• García-Cruz NU, Valdivia-Rivera S, Narciso-Ortiz L, et al. Diesel uptake by an indigenous microbial consortium isolated from sediments of the Southern Gulf of Mexico: emulsion characterisation. Environ Pollut. 2019;250:849–855. doi:10.1016/j.envpol.2019.04.109
   PubMed Web of Science ®Google Scholar
• Denis B, Pérez OA, Lizardi-Jiménez MA, et al. Numerical evaluation of direct interfacial uptake by a microbial consortium in an airlift bioreactor. Int Biodeterior Biodegrad. 2017;119:542–551. doi:10.1016/j.ibiod.2016.08.012
   Web of Science ®Google Scholar
• Patton JS, Rigler MW, Boehm PD, et al. Ixtoc 1 oil spill: flaking of surface mousse in the Gulf of Mexico. Nature. 1981;290:235–238. doi:10.1038/290235a0
   Web of Science ®Google Scholar
• Passow U, Ziervogel K, Asper V, et al. Marine snow formation in the aftermath of the deepwater horizon oil spill in the Gulf of Mexico. Environ Res Lett. 2012;7:035301. doi:10.1088/1748-9326/7/3/035301
   Web of Science ®Google Scholar
• Scoma A, Heyer R, Rifai R, et al. Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural: deep-sea microbial communities. ISME J. 2019;13:1004–1018. doi:10.1038/s41396-018-0324-5
   Web of Science ®Google Scholar
• Dubinsky EA, Conrad ME, Chakraborty R, et al. Succession of hydrocarbon-degrading bacteria in the aftermath of the deepwater horizon oil spill in the Gulf of Mexico. Environ Sci Technol. 2013;47:10860–7. doi:10.1021/es401676y
   PubMed Web of Science ®Google Scholar
• Borah D, Yadav RNS. Bioremediation of petroleum based contaminants with biosurfactant produced by a newly isolated petroleum oil degrading bacterial strain. Egypt J Petrol. 2017;26:181–188. doi:10.1016/j.ejpe.2016.02.005
   Google Scholar
• Vergeynst L, Wegeberg S, Aamand J, et al. Biodegradation of marine oil spills in the Arctic with a Greenland perspective. Sci Total Environ. 2018;626:1243–1258. doi:10.1016/j.scitotenv.2018.01.173
   Web of Science ®Google Scholar
• Lizardi-Jiménez MA, Saucedo-Castañeda G, Thalasso F, et al. Simultaneous hexadecane and oxygen transfer rate on the production of an oil-degrading consortium in a three-phase airlift bioreactor. Chem Eng J. 2012;187:160–165. doi:10.1016/j.cej.2012.01.114
   Web of Science ®Google Scholar
• Fodelianakis S, Antoniou E, Mapelli F, et al. Allochthonous bioaugmentation in ex situ treatment of crude oil-polluted sediments in the presence of an effective degrading indigenous microbiome. J Hazard Mater. 2015;287:78–86. doi:10.1016/j.jhazmat.2015.01.038
   PubMed Web of Science ®Google Scholar
• Silva-Castro GA, Rodelas B, Perucha C, et al. Bioremediation of diesel-polluted soil using biostimulation as post-treatment after oxidation with Fenton-like reagents: assays in a pilot plant. Sci Total Environ. 2013;445:347–355. doi:10.1016/j.scitotenv.2012.12.081
   PubMed Web of Science ®Google Scholar
• Ellis DE, Lutz EJ, Odom JM, et al. Bioaugmentation for accelerated in situ anaerobic bioremediation. Environ Sci Technol. 2000;34:2254–2260. doi:10.1021/es990638e
   Web of Science ®Google Scholar
• Dueholm MS, Marques IG, Karst SM, et al. Survival and activity of individual bioaugmentation strains. Bioresour Technol. 2015;186:192–199. doi:10.1016/j.biortech.2015.02.111
   PubMed Web of Science ®Google Scholar
• Jacques RJS, Okeke BC, Bento FM, et al. Microbial consortium bioaugmentation of a polycyclic aromatic hydrocarbons contaminated soil. Bioresour Technol. 2008;99:2637–2643. doi:10.1016/j.biortech.2007.04.047
   PubMed Web of Science ®Google Scholar
• Banet G, Turaani AK, Farber R, et al. The effects of biostimulation and bioaugmentation on crude oil biodegradation in two adjacent terrestrial oil spills of different age in a hyper-arid region. J Environ Manag. 2021;286:112248. doi:10.1016/j.jenvman.2021.112248
   Web of Science ®Google Scholar
• Tao K, Zhang X, Chen X, et al. Response of soil bacterial community to bioaugmentation with a plant residue-immobilized bacterial consortium for crude oil removal. Chemosphere. 2019;222:831–838. doi:10.1016/j.chemosphere.2019.01.133
   PubMed Web of Science ®Google Scholar
• Colla TS, Andreazza R, Bucker F, et al. Bioremediation assessment of diesel-biodiesel-contaminated soil using an alternative bioaugmentation strategy. Environ Sci Pollut Res. 2014;21:2592–2602. doi:10.1007/s11356-013-2139-2
   Web of Science ®Google Scholar
• Orcutt BN, Sylvan JB, Knab NJ, et al. Microbial ecology of the dark ocean above, at, and below the seafloor. Microbiol Mol Biol Rev. 2011;75:361–422. doi:10.1128/MMBR.00039-10
   PubMed Web of Science ®Google Scholar
• Hazen TC, Dubinsky EA, DeSantis TZ, et al. Deep-sea oil plume enriches indigenous oil-degrading bacteria. Science. 2010;330:204–208. doi:10.1126/science.1195979
   PubMed Web of Science ®Google Scholar
• Kleindienst S, Grim S, Sogin M, et al. Diverse rare microbial taxa responded to the deepwater horizon deep-sea hydrocarbon plume. ISME J. 2016;10:400–415. doi:10.1038/ismej.2015.121
   Web of Science ®Google Scholar
• Wu Y, Xu M, Xue J, et al. Characterization and enhanced degradation potentials of biosurfactant-producing bacteria isolated from a marine environment. ACS Omega. 2019;4:1645–1651. doi:10.1021/acsomega.8b02653
   Web of Science ®Google Scholar
• Yuping Y, Nana L, Weichao D, et al. Preparation of modified enteromorpha-immobilized microbial agent and research on diesel removal performance. China Petrol Process Petrochem Technol. 2021;23:151–160.
   Web of Science ®Google Scholar
• Shi K, Yang YP, Qiao YL, et al. Oil degradation ability difference and microbial community successions by Ochrobactrum and Shewanella in different oil-polluted seawater. J Environ Chem Eng. 2022;10:108392.
   Web of Science ®Google Scholar
• Zarinviarsagh M, Ebrahimipour G, Sadeghi H. Lipase and biosurfactant from Ochrobactrum intermedium strain MZV101 isolated by washing powder for detergent application. Lipids Health Dis. 2017;16:177. doi:10.1186/s12944-017-0565-8
   PubMed Web of Science ®Google Scholar
• Domingues PM, Oliveira V, Serafim LS, et al. Biosurfactant production in sub-oxic conditions detected in hydrocarbon-degrading isolates from marine and estuarine sediments. Int J Environ Res Public Health. 2020;17:1746. doi:10.3390/ijerph17051746
   Web of Science ®Google Scholar
• Xu YH, Lu M. Bioremediation of crude oil-contaminated soil: comparison of different biostimulation and bioaugmentation treatments. J Hazard Mater. 2010;183:395–401. doi:10.1016/j.jhazmat.2010.07.038
   PubMed Web of Science ®Google Scholar
• Zhou ZC, Tran PQ, Kieft K, et al. Genome diversification in globally distributed novel marine Proteobacteria is linked to environmental adaptation. ISME J. 2020;14:2060–2077. doi:10.1038/s41396-020-0669-4
   PubMed Web of Science ®Google Scholar
• Fincker M, Huber JA, Orphan VJ, et al. Metabolic strategies of marine subseafloor Chloroflexi inferred from genome reconstructions. Environ Microbiol. 2020;22:3188–3204. doi:10.1111/1462-2920.15061
   Web of Science ®Google Scholar
• Huber JA, Mark Welch DB, Morrison HG, et al. Microbial population structures in the deep marine biosphere. Science. 2007;318:97–100. doi:10.1126/science.1146689
   PubMed Web of Science ®Google Scholar
• Flieder M, Buongiorno J, Herbold CW, et al. Novel taxa of Acidobacteriota implicated in seafloor sulfur cycling. ISME J. 2021;15:3159–3180. doi:10.1038/s41396-021-00992-0
   Web of Science ®Google Scholar
• Dai W, Fu C, Raytcheva D, et al. Visualizing virus assembly intermediates inside marine cyanobacteria. Nature. 2013;502:707–710. doi:10.1038/nature12604
   Web of Science ®Google Scholar
• Fernandez-Gomez B, Richter M, Schueler M, et al. Ecology of marine Bacteroidetes: a comparative genomics approach. ISME J. 2013;7:1026–1037. doi:10.1038/ismej.2012.169
   PubMed Web of Science ®Google Scholar
• Rubin-Blum M, Antony CP, Borowski C, et al. Short-chain alkanes fuel mussel and sponge Cycloclasticus symbionts from deep-sea gas and oil seeps. Nat Microbiol. 2017;2:17093. doi:10.1038/nmicrobiol.2017.93
   Web of Science ®Google Scholar
• Kostka JE, Prakash O, Overholt WA, et al. Hydrocarbon-degrading bacteria and the bacterial community response in Gulf of Mexico beach sands impacted by the deepwater horizon oil spill. Appl Environ Microb. 2011;77:7962–7974. doi:10.1128/AEM.05402-11
   PubMed Web of Science ®Google Scholar
• Kimes NE, Callaghan AV, Aktas DF, et al. Metagenomic analysis and metabolite profiling of deep-sea sediments from the Gulf of Mexico following the deepwater horizon oil spill. Front Microbiol. 2013;4:1–17. doi:10.3389/fmicb.2013.00050
   Web of Science ®Google Scholar
• Mugge RL, Lee JS, Brown TT, et al. Marine biofilm bacterial community response and carbon steel loss following deepwater horizon spill contaminant exposure. Biofouling. 2019;35:870–882. doi:10.1080/08927014.2019.1673377
   PubMed Web of Science ®Google Scholar
• Terrisse F, Cravo-Laureau C, Noel C, et al. Variation of oxygenation conditions on a hydrocarbonoclastic microbial community reveals Alcanivorax and Cycloclasticus ecotypes. Front Microbiol. 2017;8:1549. doi:10.3389/fmicb.2017.01549
   Web of Science ®Google Scholar
• Liu CL. Discussion on factors for outbreak of Enteromorpha in Qingdao and countermeasures. J Anhui Agric Sci. 2013;41:1695–1698.
   Google Scholar
• Mapelli F, Scoma A, Michoud G, et al. Biotechnologies for marine oil spill cleanup: indissoluble ties with microorganisms. Trends Biotechnol. 2017;35:860–870. doi:10.1016/j.tibtech.2017.04.003
   PubMed Web of Science ®Google Scholar
• Bacosa H, Erdner D, Rosenheim B, et al. Hydrocarbon degradation and response of seafloor sediment bacterial community in the northern Gulf of Mexico to light Louisiana sweet crude oil. ISME J. 2018;12:2532–2543. doi:10.1038/s41396-018-0190-1
   PubMed Web of Science ®Google Scholar
• Park J, Kim Y-S, Kim S-J, et al. Pikeienuella piscinae gen. nov., sp. nov.: a novel genus in the family Rhodobacteraceae. J Microbiol. 2021;59:546–551. doi:10.1007/s12275-021-0678-7
   Web of Science ®Google Scholar