Groundwater, soil and compost, as possible sources of virulent and antibiotic-resistant Pseudomonas aeruginosa

References

• Ahmed ABH, Abbassi MS, Rojo-Bezares B, Ruiz-Roldán L, Dhahri R, Mehri I, Sáenz Y, Hassen A. 2019. Characterization of Pseudomonas aeruginosa isolated from various environmental niches: new STs and occurrence of antibiotic susceptible “high risk clones”. Int J Env Health Res. doi:https://doi.org/10.1080/09603123.2019.1616080.
   Google Scholar
• Ajayi T, Allmond LR, Sawa T, Wiener-Kronish JP. 2003. Single-nucleotide-polymorphism mapping of the Pseudomonas aeruginosa type III secretion toxins for development of a diagnostic multiplex PCR system. J Clin Microbiol. 41(8):3526–3531. doi:https://doi.org/10.1128/JCM.41.8.3526-3531.2003.
   PubMed Web of Science ®Google Scholar
• Al Dawodeyah HY, Obeidat N, Abu-Qatouseh LF, Shehabi AA. 2018. Antimicrobial resistance and putative virulence genes of Pseudomonas aeruginosa isolates from patients with respiratory tract infection. Germs. 8(1):31–40. doi:https://doi.org/10.18683/germs.2018.1130.
   PubMedGoogle Scholar
• Aliaga L, Mediavilla JD, Cobo F. 2002. A clinical index predicting mortality with Pseudomonas aeruginosa bacteraemia. J Med Microbiol. 51(7):615–619. doi:https://doi.org/10.1099/0022-1317-51-7-615.
   PubMed Web of Science ®Google Scholar
• Badamchi A, Masoumi H, Javadinia S, Asgarian R, Tabatabaee A. 2017. Molecular detection of six virulence genes in Pseudomonas aeruginosa isolates detected in children with urinary tract infection. Microb Pathog. 107:44–47. doi:https://doi.org/10.1016/j.micpath.2017.03.009.
   PubMed Web of Science ®Google Scholar
• Balcázar JL, Subirats J, Borrego CM. 2015. The role of biofilms as environmental reservoirs of antibiotic resistance. Front Microbiol. 6:1216. doi:https://doi.org/10.3389/fmicb.2015.01216.
   PubMed Web of Science ®Google Scholar
• Bannerman TL, Hancock GA, Tenover FC, Miller JM. 1995. Pulsed-field gel electrophoresis as a replacement for bacteriophage typing of Staphylococcus aureus. J Clin Microbiol. 33(3):551–555.
   PubMed Web of Science ®Google Scholar
• Bartoli C, Lamichhane JR, Berge O, Varvaro L, Morris CE. 2015. Mutability in Pseudomonas viridiflava as a programmed balance between antibiotic resistance and pathogenicity. Mol Plant Pathol. 16(8):860–869. doi:https://doi.org/10.1111/mpp.12243.
   PubMed Web of Science ®Google Scholar
• Bouhaddioui B, Ben Slama K, Gharbi S, Boudabous A. 2002. Epidemiology of clinical and environmental Pseudomonas aeruginosa strains. Ann Microbiol. 52(3):223–235.
   Web of Science ®Google Scholar
• Bradbury RS, Roddam LF, Merritt A, Reid DW, Champion AC. 2010. Virulence gene distribution in clinical, nosocomial and environmental isolates of Pseudomonas aeruginosa. J Med Microbiol. 59:881–890. doi:https://doi.org/10.1099/jmm.0.018283-0.
   PubMed Web of Science ®Google Scholar
• Bradley DE. 1980. A function of Pseudomonas aeruginosa PAO polar pili: twitching motility. Can J Microbiol. 26(2):146–154. doi:https://doi.org/10.1139/m80-022.
   PubMed Web of Science ®Google Scholar
• Cabot G, Zamorano L, Moyà B, Juan C, Navas A, Blázquez J, Oliver A. 2016. Evolution of Pseudomonas aeruginosa antimicrobial resistance and fitness under low and high mutation rates. Antimicrob Agents Chemother. 60(3):1767–1778. doi:https://doi.org/10.1128/AAC.02676-15.
   PubMed Web of Science ®Google Scholar
• Chaerun SK, Tazaki K, Asada R, Kogure K. 2004. Bioremediation of coastal areas 5 years after the Nakhodka oil spill in the Sea of Japan: isolation and characterization of hydrocarbon-degrading bacteria. Environ Int. 30(7):911–922. doi:https://doi.org/10.1016/j.envint.2004.02.007.
   PubMed Web of Science ®Google Scholar
• Chatterjee P, Davis E, Yu F, James S, Wildschutte JH, Wiegmann DD, Sherman DH, Mckay RM, Lipuma JJ, Wildschutte H. 2017. Environmental Pseudomonas inhibit cystic fibrosis patient-derived Pseudomonas aeruginosa. Appl Environ Microbiol. 83:e02701–16. doi:https://doi.org/10.1128/AEM.02701-16.
   PubMed Web of Science ®Google Scholar
• Choi JY, Sifri CD, Goumnerov BC, Rahme LG, Ausubel FM, Calderwood SB. 2002. Identification of virulence genes in a pathogenic strain of Pseudomonas aeruginosa by representational difference analysis. J Bacteriol. 184(4):952–961. doi:https://doi.org/10.1128/jb.184.4.952-961.2002.
   PubMed Web of Science ®Google Scholar
• CLSI. 2018. Performance standards for antimicrobial susceptibility testing. 28th ed. Wayne (PA): Clinical and Laboratory Standards Institute. CLSI Supplement M100.
   Google Scholar
• Cosgrove SE, Carmeli Y. 2003. The impact of antimicrobial resistance on health and economic outcomes. Clin Infect Dis. 36:1433–1437. doi:https://doi.org/10.1086/375081.
   PubMed Web of Science ®Google Scholar
• Deplano A, Denis O, Poirel L, Hocquet D, Nonhoff C, Byl B, Nordmann P, Vincent JL, Struelens MJ. 2005. Molecular characterization of an epidemic clone of panantibiotic-resistant Pseudomonas aeruginosa. J Clin Microbiol. 43(3):1198–1204. doi:https://doi.org/10.1128/JCM.43.3.1198-1204.2005.
   PubMed Web of Science ®Google Scholar
• Deredjian A, Colinon C, Hien E, Brothier E, Youenou B, Cournoyer B, Dequiedt S, Hartmann A, Jolivet C, Houot S, et al. 2014. Low occurrence of Pseudomonas aeruginosa in agricultural soils with and without organic amendment. Front Cell Infect Microbiol. 4:53. doi:https://doi.org/10.3389/fcimb.2014.00053.
   PubMed Web of Science ®Google Scholar
• Divya J, Mohandas A, Singh B. 2018. A non-pathogenic environmental isolate of Pseudomonas aeruginosa MCCB 123 with biotechnological potential. Int J Curr Microbiol Appl Sci. 7(1):3060–3071. doi:https://doi.org/10.20546/ijcmas.2018.701.363.
   Google Scholar
• Drake D, Montie TC. 1988. Flagella, motility and invasive virulence of Pseudomonas aeruginosa. J Gen Microbiol. 134(1):43–52. doi:https://doi.org/10.1099/00221287-134-1-43.
   PubMedGoogle Scholar
• Dubern JF, Cigana C, De Simone M, Lazenby J, Juhas M, Schwager S, Bianconi I, Döring G, Eberl L, Williams P, et al. 2015. Integrated whole-genome screening for Pseudomonas aeruginosa virulence genes using multiple disease models reveals that pathogenicity is host specific. Environ Microbiol. 17(11):4379–4393. doi:https://doi.org/10.1111/1462-2920.12863.
   PubMed Web of Science ®Google Scholar
• Ebadi A, Khoshkholgh Sima NA, Olamaee M, Hashemi M, Ghorbani Nasrabadi R. 2017. Effective bioremediation of a petroleum-polluted saline soil by a surfactant-producing Pseudomonas aeruginosa consortium. J Adv Res. 8:627–633. doi:https://doi.org/10.1016/j.jare.2017.06.008.
   PubMed Web of Science ®Google Scholar
• El Zowalaty ME, Al Thani AA, Webster TJ, El Zowalaty AE, Schweizer HP, Nasrallah GK, Marei HE, Ashour HM. 2015. Pseudomonas aeruginosa: arsenal of resistance mechanisms, decades of changing resistance profiles, and future antimicrobial therapies. Future Microbiol. 10(10):1683–1706. doi:https://doi.org/10.2217/fmb.15.48.
   PubMed Web of Science ®Google Scholar
• European Committee on Antimicrobial Susceptibility Testing. 2018. Breakpoint tables for interpretation of MICs and zone diameters–version 9.0. [accessed 2018 July 19]. http://www.eucast.org.
   Google Scholar
• Fazeli N, Momtaz H. 2014. Virulence gene profiles of multidrug-resistant Pseudomonas aeruginosa isolated from Iranian hospital infections. Iran Red Crescent Med J. 16(10):e15722. doi:https://doi.org/10.5812/ircmj.61469.
   PubMed Web of Science ®Google Scholar
• Georgescu M, Gehorghe I, Curutiu C, Lazar V, Bleotu C, Chifiriuc M-C. 2016. Virulence and resistance features of Pseudomonas aeruginosa strains isolated from chronic leg ulcers. BMC Infect Dis. 16(Suppl 1):92. doi:https://doi.org/10.1186/s12879-016-1396-3.
   PubMed Web of Science ®Google Scholar
• Hassuna NA. 2016. Molecular detection of the virulent exoU genotype of Pseudomonas aeruginosa isolated from infected surgical incisions. Surg Inf. 17(5):610–614. doi:https://doi.org/10.1089/sur.2016.065.
   PubMed Web of Science ®Google Scholar
• Hill L, Veli N, Coote PJ. 2014. Evaluation of Galleria mellonella larvae for measuring the efficacy and pharmacokinetics of antibiotic therapies against Pseudomonas aeruginosa infection. Int J Antimicrob Agents. 43(3):254–261. doi:https://doi.org/10.1016/j.ijantimicag.2013.11.001.
   PubMed Web of Science ®Google Scholar
• Jander G, Rahme LG, Ausubel FM. 2000. Positive correlation between virulence of Pseudomonas aeruginosa mutants in mice and insects. J Bacteriol. 182(13):3843–3845. doi:https://doi.org/10.1128/JB.182.13.3843-3845.2000.
   PubMed Web of Science ®Google Scholar
• Kaiser SJ, Mutters NT, DeRosa A, Ewers C, Frank U, Günther F. 2017. Determinants for persistence of Pseudomonas aeruginosa in hospitals: interplay between resistance, virulence and biofilm formation. Eur J Clin Microbiol Infect Dis. 36(2):243–253. doi:https://doi.org/10.1007/s10096-016-2792-8.
   PubMed Web of Science ®Google Scholar
• Karami P, Mohajeri P, Mashouf RY, Karami M, Yaghoobi MH, Dastan D, Alikhani MY. 2018. Molecular characterization of clinical and environmental Pseudomonas aeruginosa isolated in a burn center. Saudi J Biol Sci. doi:https://doi.org/10.1016/j.sjbs.2018.07.009.
   Google Scholar
• Kaszab E, Kriszt B, Atzél B, Szabó G, Szabó I, Harkai P, Szoboszlay S. 2010. The occurrence of multidrug-resistant Pseudomonas aeruginosa on hydrocarbon-contaminated sites. Microb Ecol. 59(1):37–45. doi:https://doi.org/10.1007/s00248-009-9551-7.
   PubMed Web of Science ®Google Scholar
• Koch G, Nadal-Jimenez P, Cool RH, Quax WJ. 2014. Assessing Pseudomonas virulence with nonmammalian host: Galleria mellonella. In: Filloux A, Ramos J-L, editors. Pseudomonas methods and protocols, methods in molecular biology. Vol. 1149. Springer Science+Business Media New York. doi:https://doi.org/10.1007/978-1-4939-0473-0_52.
   Google Scholar
• Köhler T, Curty LK, Barja F, Van Delden C, Pechere JC. 2000. Swarming of Pseudomonas aeruginosa is dependent on cell-to-cell signaling and requires flagella and pili. J Bacteriol. 182(21):5990–5996. doi:https://doi.org/10.1128/JB.182.21.5990-5996.2000.
   PubMed Web of Science ®Google Scholar
• Kumar A, Munder A, Aravind R, Eapen SJ, Tümmler B, Raaijmakers JM. 2013. Friend or foe: genetic and functional characterization of plant endophytic Pseudomonas aeruginosa. Environ Microbiol. 15(3):764–779. doi:https://doi.org/10.1111/1462-2920.12031.
   PubMed Web of Science ®Google Scholar
• Lee DG, Urbach JM, Wu G, Liberati NT, Feinbaum RL, Miyata S, Diggins LT, He J, Saucier M, Déziel E, et al. 2006. Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial. Genome Biol. 7(10):R90. doi:https://doi.org/10.1186/gb-2006-7-10-r90.
   PubMed Web of Science ®Google Scholar
• Liew SM, Rajaskaram G, Puthucheary SDA, Chua KH. 2019. Antimicrobial susceptibility and virulence genes of clinical and environmental isolates of Pseudomonas aeruginosa. Peer J. 7e:6217. doi:https://doi.org/10.7717/peerj.6217.
   Web of Science ®Google Scholar
• Lu Q, Eggimann P, Luyt C-E, Wolff M, Tamm M, François B, Mercier E, Garbino J, Laterre P-F, Koch H, et al. 2014. Pseudomonas aeruginosa serotypes in nosocomial pneumonia: prevalence and clinical outcomes. Crit Care. 18(1):R17. doi:https://doi.org/10.1186/cc13697.
   PubMed Web of Science ®Google Scholar
• Magiorakos AP, Srinivasan A, Carey RB, Carmeli Y, Falagas ME, Giske CG, Harbarth S, Hindler JF, Kahlmeter G, Olsson-Liljequist B, et al. 2012. Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance. Clin Microbiol Infect. 18(3):268–281. doi:https://doi.org/10.1111/j.1469-0691.2011.03570.x.
   PubMed Web of Science ®Google Scholar
• Mesaros N, Nordmann P, Plésiat P, Roussel-Delvallez M, Van Eldere J, Glupczynski Y, Van Laethem Y, Jacobs F, Lebecque P, Malfroot A, et al. 2007. Pseudomonas aeruginosa: resistance and therapeutic options at the turn of the new millennium. Clin Microbiol Infect. 13(6):560–578. doi:https://doi.org/10.1111/j.1469-0691.2007.01681.x.
   PubMed Web of Science ®Google Scholar
• Milivojevic D, Sumonja N, Medic S, Pavic A, Moric I, Vasiljevic B, Senerovic L, Nikodinovic-Runic J. 2018. Biofilm-forming ability and infection potential of Pseudomonas aeruginosa strains isolated from animals and humans. Pathog Dis. 76(4):1–14. doi:https://doi.org/10.1093/femspd/fty041.
   Web of Science ®Google Scholar
• Miyata S, Casey M, Frank DW, Ausubel FM, Drenkard E. 2003. Use of the Galleria mellonella caterpillar as a model host to study the role of the type III secretion system in Pseudomonas aeruginosa pathogenesis. Infect Immun. 71(5):2404–2413. doi:https://doi.org/10.1128/IAI.71.5.2404-2413.2003.
   PubMed Web of Science ®Google Scholar
• Neidig A, Yeung AT, Rosay T, Tettmann B, Strempel N, Rueger M, Lesouhaitier O, Overhage J. 2013. TypA is involved in virulence, antimicrobial resistance and biofilm formation in Pseudomonas aeruginosa. BMC Microbiol. 13:77. doi:https://doi.org/10.1186/1471-2180-13-77.
   PubMed Web of Science ®Google Scholar
• O’Toole GA, Kolter R. 1998. Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development. Mol Microbiol. 30(2):295–304. doi:https://doi.org/10.1046/j.1365-2958.1998.01062.x.
   PubMed Web of Science ®Google Scholar
• Pirnay JP, Bilocq F, Pot B, Cornelis P, Zizi M, Van Eldere J, Deschaght P, Vaneechoutte M, Jennes S, Pitt T, et al. 2009. Pseudomonas aeruginosa population structure revisited. PLoS One. 4:e7740. doi:https://doi.org/10.1371/journal.pone.0007740.
   PubMed Web of Science ®Google Scholar
• Radó J, Kaszab E, Petrovics T, Pászti J, Kriszt B, Szoboszlay S. 2017. Characterization of environmental Pseudomonas aeruginosa using multilocus sequence typing scheme. J Med Microbiol. 66(10):1457–1466. doi:https://doi.org/10.1099/jmm.0.000589.
   PubMed Web of Science ®Google Scholar
• Radhapriya P, Ramachandran A, Anandham R, Mahalingam S. 2015. Pseudomonas aeruginosa RRALC3 enhances the biomass, nutrient and carbon contents of Pongamia pinnata seedlings in degraded forest soil. PLoS One. 10:e0139881. doi:https://doi.org/10.1371/journal.pone.0139881.
   PubMed Web of Science ®Google Scholar
• Roshani-Asl P, Rashidi N, Shokoohizadeh L, Zarei J. 2018. Relationship among antibiotic resistance, biofilm formation and lasB gene in Pseudomonas aeruginosa isolated from burn patients. Clin Lab. 64(9):1477–1484. doi: https://doi.org/10.7754/Clin.Lab.2018.180331.
   PubMed Web of Science ®Google Scholar
• Rutherford V, Yom K, Ozer EA, Pura O, Hughes A, Murphy KR, Cudzilo L, Mitchel D, Hauser AR. 2018. Environmental reservoirs for exoS+ and exoU+ strains of Pseudomonas aeruginosa. Environ Microbiol Rep. 10(4):485–492. doi:https://doi.org/10.1111/1758-2229.12653.
   PubMed Web of Science ®Google Scholar
• Salimi H, Yakchali B, Owlia P, Lari AR. 2010. Molecular epidemiology and drug susceptibility of Pseudomonas aeruginosa strains isolated from burn patients. Lab Med. 41:540–544. doi:https://doi.org/10.1309/LMNIJE31EDC1WAMP.
   Web of Science ®Google Scholar
• Schmidt J, Müsken M, Becker T, Magnowska Z, Bertinetti D, Möller S, Zimmermann B, Herberg FW, Jänsch L, Häussler S. 2011. The Pseudomonas aeruginosa chemotaxis methyltransferase CheR1 impacts on bacterial surface sampling. Plos One. 6(3):e18184. doi:https://doi.org/10.1371/journal.pone.0018184.
   PubMed Web of Science ®Google Scholar
• Schroeder M, Brooks BD, Brooks AE. 2017. The complex relationship between virulence and antibiotic resistance. Genes (Basel). 8(1): pii: E39. doi:https://doi.org/10.3390/genes8010039.
   PubMed Web of Science ®Google Scholar
• Shaver CM, Hauser AR. 2004. Relative contributions of Pseudomonas aeruginosa ExoU, ExoS and ExoT to virulence in the lung. Infect Immun. 7(2):6969–6977. doi:https://doi.org/10.1128/IAI.72.12.6969-6977.2004.
   Web of Science ®Google Scholar
• Shehata MMK, Sayed AA. 2011. Genetic diversity and twitching motility of Pseudomonas aeruginosa strains isolated from different origins. Arch Clin Microbiol. 2(5):4.
   Google Scholar
• Silby MW, Winstanley C, Godfrey SAC, Levy SB, Jackson RW. 2011. Pseudomonas genomes: diverse and adaptable. FEMS Microbiol Rev. 35(4):652–680. doi:https://doi.org/10.1111/j.1574-6976.2011.00269.x.
   PubMed Web of Science ®Google Scholar
• Spilker T, Coenye T, Vandamme P, LiPuma JJ. 2004. PCR-based assay for differentiation of Pseudomonas aeruginosa from other Pseudomonas species recovered from cystic fibrosis patients. J Clin Microbiol. 42(5):2074–2079. doi:https://doi.org/10.1128/JCM.42.5.2074-2079.2004.
   PubMed Web of Science ®Google Scholar
• Stepanović S, Vuković D, Dakić I, Savić B, Švabić-Vlahović M. 2000. A modified microtiter-plate test for quantification of staphylococcal biofilm formation. J Microbiol Methods. 40(2):175–179. doi:https://doi.org/10.1016/S0167-7012(00)00122-6.
   PubMed Web of Science ®Google Scholar
• Strateva T, Mitov I. 2011. Contribution of an arsenal of virulence factors to pathogenesis of Pseudomonas aeruginosa infections. Ann Microbiol. 61(4):717–732. doi:https://doi.org/10.1007/s13213-011-0273-y.
   Web of Science ®Google Scholar
• Taee SR, Khansarinejad B, Abtahi H, Najafimosleh M, Gzanavi-Rad E. 2014. Detection of algD, oprL and exoA genes by new specific primers as an efficient, rapid and accurate procedure for direct diagnosis of Pseudomonas aeruginosa strains in clinical samples. Jundishapur J Microbiol. 7(10):e 13583.
   Web of Science ®Google Scholar
• Tenover FC, Arbeit RD, Goering RV, Mickelsen PA, Murray BE, Persing DH, Swaminathan B. 1995. Interpreting chromosomal DNA restriction patterns produced by pulsed- field gel electrophoresis: criteria for bacterial strain typing. J Clin Microbiol. 33(9):2233–2239.
   PubMed Web of Science ®Google Scholar
• Thrane SW, Taylor VL, Freschi L, Kukavica-Ibrulj I, Boyle B, Laroche J, Pirnay J-P, Lévesque RC, Lam JS, Jelsbak L. 2015. The widespread multidrug-resistant serotype O12 Pseudomonas aeruginosa clone emerged through concomitant horizontal transfer of serotype antigen and antibiotic resistance gene clusters. mBio. 6(5):e01396–15. doi:https://doi.org/10.1128/mBio.01396-15.
   PubMed Web of Science ®Google Scholar
• Tokajian S, Timani R, Issa N, Araj G. 2012. Molecular characterization, multiple drug resistance and virulence determinants of Pseudomonas aeruginosa isolated from Lebanon. Br Microbiol Res J. 2:243–250. doi:https://doi.org/10.9734/BMRJ/2012/2217.
   Google Scholar
• Tsai CJ-Y, Loh JMS, Proft T. 2016. Galleria mellonella infection models for the study of bacterial diseases and for antimicrobial drug testing. Virulence. 7(3):214–229. doi:https://doi.org/10.1080/21505594.2015.1135289.
   PubMed Web of Science ®Google Scholar
• Ullah W, Qasim M, Rahman H, Jie Y, Muhammad N. 2017. Beta-lactamase-producing Pseudomonas aeruginosa: phenotypic characteristics and molecular identification of virulence genes. J Chinese Med Assoc. 80(3):173–177. doi:https://doi.org/10.1016/j.jcma.2016.08.011.
   PubMed Web of Science ®Google Scholar
• Van Duuren JBJH, Müsken M, Karge B, Tomasch J, Wittmann C, Häussler S, Brönstrup M. 2017. Use of single-frequency impedance spectroscopy to characterize the growth dynamics of biofilm formation in Pseudomonas aeruginosa. Sci Rep. 7. doi:https://doi.org/10.1038/s41598-017-05273-5.
   Google Scholar
• Velikova N, Kavanagh K, Wells JM. 2016. Evaluation of Galleria mellonella larvae for studying the virulence of Streptococcus suis. BMC Microbiol. 16:1–9. doi:https://doi.org/10.1186/s12866-016-0905-2.
   PubMed Web of Science ®Google Scholar
• Yasmin S, Hafeez FY, Mirza MS, Rasul M, Arshad HMI, Zubair M, Iqbal M. 2017. Biocontrol of bacterial leaf blight of rice and profiling of secondary metabolites produced by rhizospheric Pseudomonas aeruginosa BRp3. Front Microbiol. 8. doi:https://doi.org/10.3389/fmicb.2017.01895.
   Google Scholar