3,438
Views
37
CrossRef citations to date
0
Altmetric
Original Articles

Universal plastid primers for Chlorophyta and Rhodophyta

Pages 43-50 | Received 23 Jul 2003, Accepted 09 Oct 2003, Published online: 20 Feb 2007

References

References

  • Bellorin , AM , Oliveira , MC and Oliveira , EC . 2002 . Phylogeny and systematics of the marine algal family Gracilariaceae (Gracilariales, Rhodophyta) based on small subunit rDNA and ITS sequences of Atlantic and Pacific species . J. Phycol , 38 : 551 – 563 .
  • Bown , P , Plumb , J , Sanchez-Baracaldo , P , Hayes , PK and Brodie , J . 2003 . Sequence heterogeneity of green (Chlorophyta) endophytic algae associated with a population of Chondrus crispus (Gigartinaceae, Rhodophyta) . Eur. J. Phycol , 38 : 153 – 163 .
  • Coyer , JA , Peters , AF , Stam , WT and Olsen , JL . 2003 . Post-ice age recolonization and differentiation of Fucus serratus L. (Phaeophyceae; Fucaceae) populations in Northern Europe . Mol. Ecol , 12 : 1817 – 1829 .
  • Demesure , B , Sodzi , N and Petit , RJ . 1995 . A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants . Mol. Ecol , 4 : 129 – 131 .
  • Destombe , C and Douglas , SE . 1991 . Rubisco spacer sequence divergence in the rhodophyte alga Gracilaria verrucosa and closely related species . Curr. Genet , 19 : 395 – 398 .
  • Douglas , SE and Penny , SL . 1999 . The plastid genome of the cryptophyte alga, Guillardia theta: complete sequence and conserved synteny groups confirm its common ancestry with red algae . J. Mol. Evol , 48 : 236 – 244 .
  • Draisma , SGA , Olsen , JL , Stam , WT and Prud'Homme van Reine , WF . 2002 . Phylogenetic relationships within the Sphacelariales (Phaeophyceae): rbcL, RUBISCO spacer and morphology . Eur. J. Phycol , 37 : 385 – 402 .
  • Dumolin-Lapegue , S , Pemonge , MH and Petit , RJ . 1997 . An enlarged set of consensus primers for the study of organelle DNA in plants . Mol. Ecol , 6 : 393 – 397 .
  • Engel , CR , Valero , M , Lagadeuc , Y and Destombe , C . 2002 . Non-random mating in controlled multiple-donor crosses in Gracilaria gracilis (Gracilariaceae, Rhodophyta) . Eur. J. Phycol , 37 : 179 – 190 .
  • Famà , P , Olsen , JL , Stam , WT and Procaccini , G . 2000 . High levels of intra- and inter-individual polymorphism in the rDNA ITS1 of Caulerpa racemosa (Chlorophyta) . Eur. J. Phycol , 35 : 349 – 356 .
  • Freshwater , DW , Fredericq , S , Butler , BS , Hommersand , MH and Chase , MW . 1994 . A gene phylogeny of the red algae (Rhodophyta) based on plastid rbcL . Proc. Natl. Acad. Sci. USA , 91 : 7281 – 7285 .
  • Gabrielsen , TM , Brochmann , C and Rueness , J . 2002 . The Baltic Sea as a model system for studying postglacial colonization and ecological differentiation, exemplified by the red alga Ceramium . Mol. Ecol , 11 : 2083 – 2095 .
  • Glockner , G , Rosenthal , A and Valentin , K . 2000 . The structure and gene repertoire of an ancient red algal plastid genome . J. Mol. Evol , 51 : 382 – 390 .
  • Harper , JT and Saunders , GW . 2001 . Molecular systematics of the Florideophyceae (Rhodophyta) using nuclear large and small subunit rDNA sequence data . J. Phycol , 37 : 1073 – 1082 .
  • Harper , JT and Saunders , GW . 2002 . A re-classification of the Acrochaetiales based on molecular and morphological data, and establishment of the Colaonematales ord. nov. (Florideophyceae, Rhodophyta) . Eur. J. Phycol , 37 : 463 – 476 .
  • Hayden , HS , Blomster , J , Maggs , CA , Silva , PC , Stanhope , MJ and Waaland , JR . 2003 . Linnaeus was right all along: Ulva and Enteromorpha are not distinct genera . Eur. J. Phycol , 38 : 277 – 294 .
  • Kowallik , KV , Stoebe , B , Schaffran , I , Kroth-Pancic , P and Freier , U . 1995 . The chloroplast genome of a chlorophyll a + c- containing alga, Odontella sinensis . Plant. Mol. Biol. Rep , 13 : 336 – 342 .
  • Lange , M , Chen , YQ and Medlin , LK . 2002 . Molecular genetic delineation of Phaeocystis species (Prymnesiophyceae) using coding and non-coding regions of nuclear and plastid genomes . Eur. J. Phycol , 37 : 77 – 92 .
  • Lemieux , C , Otis , C and Turmel , M . 2000 . Ancestral chloroplast genome in Mesostigma viride reveals an early branch of green plant evolution . Nature , 403 : 649 – 652 .
  • Maggs , CA , Douglas , SE , Fenety , J and Bird , CJ . 1992 . A molecular and morphological analysis of the Gymnogongrus devoniensis complex in the North Atlantic . J. Phycol , 28 : 214 – 232 .
  • Marston , M and Villalard-Bohnsack , M . 2002 . Genetic variability and potential sources of Grateloupia doryphora (Halymeniaceae, Rhodophyta), an invasive species in Rhode Island waters (USA) . J. Phycol , 38 : 649 – 658 .
  • McDade , LA and Moody , ML . 1999 . Phylogenetic relationships among Acanthaceae: Evidence from noncoding trnL-trnF chloroplast DNA sequences . Am. J. Bot , 86 : 70 – 80 .
  • McIvor , L , Maggs , CA and Stanhope , MJ . 2002 . rbcL sequences indicate a single evolutionary origin of multinucleate cells in the red algal tribe Callithamnieae . Mol. Phylog. Evol , 23 : 433 – 446 .
  • Ohta , N , Sato , N , Nozaki , H and Kuroiwa , T . 1997 . Analysis of the cluster of ribosomal protein genes in the plastid genome of a unicellular red alga Cyanidioschyzon merolae: Translocation of the str cluster as an early event in the rhodophyte-chromophyte lineage of plastid evolution . J. Mol. Evol , 45 : 688 – 695 .
  • Ohta , N , Matsuzaki , M , Misumi , O , Miyagishima , S , Nozaki , H , Tanaka , K , Shin-i , T , Kohara , Y and Kuroiwa , T . 2003 . Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae . DNA Res , 10 : 67 – 77 .
  • Reith , ME and Munholland , J . 1995 . Complete nucleotide sequence of the Porphyra purpurea chloroplast genome . Plant Mol. Biol. Rep , 13 : 333 – 335 .
  • Stirewalt , VL , Michalowski , CB , Löffelhardt , W , Bohnert , HJ and Bryant , DA . 1995 . Nucleotide sequence of the cyanelle genome from Cyanophora paradoxa . Plant Mol. Biol. Rep , 13 : 327 – 332 .
  • Stoebe , B and Kowallik , KV . 1999 . Gene-cluster analysis in chloroplast genomics . Trends in Genetics , 15 : 344 – 347 .
  • Taberlet , P , Gielly , L , Patou , G and Bouvet , J . 1991 . Universal primers for amplification of three non-coding regions of chloroplast DNA . Plant Mol. Biol , 17 : 1105 – 1109 .
  • Turmel , M , Otis , C and Lemieux , C . 1999 . The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: insights into the architecture of ancestral chloroplast genomes . Proc. Natl. Acad. Sci. USA , 96 : 10248 – 10253 .
  • Turmel , M , Otis , C and Lemieux , C . 2002 . The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: Insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants . Proc. Natl. Acad. Sci. USA , 99 : 11275 – 11280 .
  • van der Strate , HJ , Boele-Bos , SA , Olsen , JL , van de Zande , L and Stam , WT . 2002 . Phylogeographic studies in the tropical seaweed Cladophoropsis membranacea (Chlorophyta, Ulvophyceae) reveal a cryptic species complex . J. Phycol , 38 : 572 – 582 .
  • Wakasugi , T , Nagai , T , Kapoor , M , Sugita , M , Ito , M , Ito , S , Tsudzuki , J , Nakashima , K , Tsudzuki , T , Suzuki , Y , Hamada , A , Ohta , T , Inamura , A , Yoshinaga , K and Sugiura , M . 1997 . Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: the existence of genes possibly involved in chloroplast division . Proc. Natl. Acad. Sci. USA , 94 : 5967 – 5972 .
  • Wattier , R , Prodohl , PA and Maggs , CA . 2000 . DNA extaction protocol for red seaweeds . Plant Mol. Biol. Rep , 18 : 275 – 281 .
  • Wattier , RA and Maggs , CA . 2001 . Intraspecific variation in seaweeds: the application of new tools and approaches . Adv. Bot. Res , 35 : 171 – 212 .
  • Wattier , RA , Davidson , AL , Ward , BA and Maggs , CA . 2001 . cpDNA-RFLP in Ceramium (Rhodophyta): Intraspecific polymorphism and species-level phylogeny . Am. J. Bot , 88 : 1209 – 1213 .
  • White TJ Bruns T Lee S Taylor J 1990 Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics In PCR Protocols: a Guide to Methods and Applications (Innis, M., Gelfand, J., Sninsky, J. & White, T.J., editors) 315 322 Academic Press, Orlando, Florida
  • Zuccarello , GC , Burger , G , West , JA and King , RJ . 1999 . A mitochondrial marker for red algal intraspecific relationships . Mol. Ecol , 8 : 1443 – 1447 .
  • Zuccarello , GC and West , JA . 2002 . Phylogeography of the Bostrychia calliptera-B. pinnata complex (Rhodomelaceae, Rhodophyta) and divergence rates based on nuclear, mitochondrial and plastid DNA markers . Phycologia , 41 : 49 – 60 .
  • Zuccarello , GC , Sandercock , B and West , JA . 2002 . Diversity within red algal species: variation in world-wide samples of Spyridia filamentosa (Ceramiaceae) and Murrayella periclados (Rhodomelaceae) using DNA markers and breeding studies . Eur. J. Phycol , 37 : 403 – 417 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.