Factors influencing microbial mat composition, distribution and dinitrogen fixation in three western Indian Ocean coral reefs

References

• Abed , RMM , Golubic , S , Garcia Pichel , F , Camoin , G and Sprachta , S . 2003a . Characterization of microbialite-forming cyanobacteria in a tropical lagoon: Tikehau Atoll, Tuamotu, French Polynesia . Journal of Phycology , 39 : 862 – 873 .
   Web of Science ®Google Scholar
• Abed , RMM , Golubic , S , Garcia Pichel , F , Camoin , G and Seong-Joo , Lee . 2003b . Identity and speciation in marine benthic cyanobacteria: the Phormidium complex . Algological Studies , 109 : 35 – 56 .
   Google Scholar
• Abed , RMM , Palinska , KA , Camoin , G and Golubic , S . 2006 . Common evolutionary origin of planktonic and benthic nitrogen-fixing oscillatoriacean cyanobacteria from tropical oceans . FEMS Microbiology Letters , 260 : 171 – 177 .
   PubMed Web of Science ®Google Scholar
• Abed , RMM , Kohls , K , Schoon , R , Scherf , A-K , Schacht , M , Palinska , KA , Rullköter , J and Golubic , S . 2008 . Lipid biomarkers, pigments and cyanobacterial diversity of microbial mats across intertidal flats of the arid coast of the Arabian Gulf (Abu Dhabi, UAE) . FEMS Microbiology Ecology , 65 : 449 – 462 .
   PubMed Web of Science ®Google Scholar
• Bauer , K , Diez , B , Lugomela , C , Seppala , S , Borg , AJ and Bergman , B . 2008 . Variability in benthic diazotrophy and cyanobacterial diversity in a tropical intertidal lagoon . FEMS Microbiology Ecology , 63 : 205 – 222 .
   PubMed Web of Science ®Google Scholar
• Berman-Frank , I , Lundgren , P , Chen , Y-B. , Küpper , H , Kolber , Z , Bergman , B and Falkowski , P . 2001 . Segregation of nitrogen fixation and oxygenic photosynthesis in the marine cyanobacterium Trichodesmium . Science , 294 : 1534 – 1537 .
   PubMed Web of Science ®Google Scholar
• Berman-Frank , I , Lundgren , P and Falkowski , P . 2003 . Nitrogen fixation and photosynthetic oxygen evolution in cyanobacteria . Research in Microbiology , 154 : 157 – 164 .
   PubMed Web of Science ®Google Scholar
• Breitbarth , E , Mills , MM , Friedrichs , G and LaRoche , J . 2004 . The Bunsen gas solubility coefficient of ethylene as a function of temperature and salinity and its importance for nitrogen fixation assays . Limnology and Oceanography Methods , 2 : 282 – 288 .
   Web of Science ®Google Scholar
• Camacho , A and de Wit , R . 2003 . Effect of nitrogen and phosphorus additions on a benthic microbial mat from a hypersaline lake . Aquatic Microbial Ecology , 32 : 261 – 273 .
   Web of Science ®Google Scholar
• Camoin , GF , Colonna , M , Montaggioni , LF , Casanova , J , Faure , G and Thomassin , BA . 1997 . Holocene sea level changes and reef development in the south-western Indian Ocean . Coral Reefs , 16 : 247 – 259 .
   Web of Science ®Google Scholar
• Casareto, B.E., Charpy, L., Langlade, M.-J., Suzuki, T., Ohba, H., Niraula, M. & Suzuki, Y. (2010). Nitrogen fixation in coral reef environments. In Proceedings of the 11th International Coral Reef Symposium, Ft. Lauderdale, Florida, 7–11 July 2008, Vol. 2: 890–894 (Session number 19)
   Google Scholar
• Castenholz, R.W., Rippka, R., Herdman, M. & Wilmotte, A. (2001). Subsection III. (Formerly Oscillatoriales Elenkin 1934). In Bergey's Manual of Systematic Bacteriology. 2nd ed. (Garrity, G., editor), 539–562. Springer-Verlag, New York
   Google Scholar
• Charpy , L , Alliod , R , Rodier , M and Golubic , S . 2007 . Benthic nitrogen fixation in the SW New Caledonia lagoon . Aquatic Microbial Ecology , 47 : 73 – 81 .
   Web of Science ®Google Scholar
• Charpy , L , Palinska , K , Casareto , B , Langlade , MJ , Suzuki , Y , Abed , RMM and Golubic , S . 2010 . Dinitrogen-fixing Cyanobacteria in microbial mats of two shallow coral reef ecosystems . Microbial Ecology , 59 : 174 – 186 .
   PubMed Web of Science ®Google Scholar
• Charpy-Roubaud , C , Charpy , L and Larkum , AWD . 2001 . Atmospheric dinitrogen fixation by benthic communities of Tikehau Lagoon (Tuamotu Archipelago, French Polynesia) and its contribution to benthic primary production . Marine Biology , 139 : 991 – 997 .
   Web of Science ®Google Scholar
• Charpy-Roubaud , C and Larkum , AWD . 2005 . Dinitrogen fixation by exposed communities on the rim of Tikehau atoll (Tuamotu Archipelago, French Polynesia) . Coral Reefs , 24 : 622
   Web of Science ®Google Scholar
• Cheroske , AG , Williams , SL and Carpenter , RC . 2000 . Effects of physical and biological disturbances on algal turfs in Kaneohe Bay, Hawaii . Journal of Experimental Marine Biology and Ecology , 248 : 1 – 34 .
   PubMed Web of Science ®Google Scholar
• Cruz-Rivera , E and Paul , VJ . 2007 . Chemical deterrence of a cyanobacterial metabolite against generalized and specialized grazers . Journal of Chemical Ecology , 33 : 213 – 217 .
   PubMed Web of Science ®Google Scholar
• Donguy , JR and Piton , B . 1991 . The Mozambique Channel revisited . Oceanologica Acta , 14 : 549 – 558 .
   Google Scholar
• Gautret , P , Camoin , G , Golubic , S and Sprachta , S . 2004 . Biochemical control of calcium carbonate precipitation in modern lagoonal microbialites, Tikehau Atoll, French Polynesia . Journal of Sedimentary Research , 74 : 462 – 478 .
   Web of Science ®Google Scholar
• Gautret , P , De Wit , R , Camoin , G and Golubic , S . 2006 . Are environmental conditions recorded by the organic matrices associated with precipitated calcium carbonate in cyanobacterial microbialites? . Geobiology , 4 : 93 – 107 .
   Web of Science ®Google Scholar
• Geitler, L.(1932). Cyanophyceae. In Dr L. Rabenhorsts Kryptogamenflora von Deutschland Österreich und der Schweiz. Akademische Verlagsgesellschaft, Vol. 14. Akademische Verlagsgesellschaft, Leipzig
   Google Scholar
• Golubic , S . 1985 . “ Microbial mats and modern stromatolites in Shark Bay, Western Australia ” . In Planetary Ecology , Edited by: Caldwell , D.E. , Brierley , J.A. and Brierley , C.L. 3 – 16 . New York : Van Nostrand Reinhold .
   Google Scholar
• Golubic , S , Sergeev , VN and Knoll , AH . 1995 . Mesoproterozoic akinetes (Archaoellipsoides): fossil evidence of heterocystous Cyanobacteria . Lethaia , 28 : 285 – 298 .
   PubMed Web of Science ®Google Scholar
• Hoffmann , L . 1999 . Marine cyanobacteria in tropical regions: diversity and ecology [Review] . European Journal of Phycology , 34 : 371 – 379 .
   Web of Science ®Google Scholar
• Kayanne , H , Hirota , M , Yamamuro , M and Koike , I . 2005 . Nitrogen fixation of filamentous cyanobacteria in a coral reef measured using three different methods . Coral Reefs , 24 : 197 – 200 .
   Web of Science ®Google Scholar
• Komárek , J and Anagnostidis , K . 2005 . “ Cyanoprokaryota. Part 2: Oscillatoriales ” . In Süsswasserflora von Mitteleuropa , Edited by: Büdel , B. , Gärtner , G. , Krienitz , L. and Schagerl , M. Vol. 19 (2) , 1 – 759 . Heidelberg : Elsevier Spectrum .
   Google Scholar
• Larkum , AWD . 1988 . High rates of nitrogen fixation on coral skeletons after predation by the crown of thorns starfish Acanthaster planci . Marine Biology , 97 : 503 – 506 .
   Web of Science ®Google Scholar
• Larkum , AWD , Kennedy , IR and Muller , WJ . 1988 . Nitrogen fixation on a coral reef . Marine Biology , 98 : 143 – 155 .
   Web of Science ®Google Scholar
• Laurent , D , Kerbrat , AS , Darius , HT , Girard , E , Golubic , S , Bennoit , E , Sauviat , MP , Chinain , M , Molgo , J and Paullac , S . 2008 . Are cyanobacteria involved in Ciguatera Fish Poisoning outbreaks in New Caledonia? . Harmful Algae , 7 : 827 – 838 .
   Web of Science ®Google Scholar
• Lemmermann, E. (1905). Die Algenflora der Sandwich-Inseln. Ergebnisse einer Reise nach dem Pacific (H. Schauinsland 1896-7). Botanisches Jahrbuch, 34: 607–663
   Google Scholar
• Luesch , H , Yoshida , WY , Moore , RE , Paul , VJ and Mooberry , SL . 2000 . Isolation, structure determination and biological activity of Lyngbyabellin A from the marine cyanobacterium Lyngbya majuscula . Journal of Natural Products , 63 : 611 – 615 .
   PubMed Web of Science ®Google Scholar
• Lugomela , C , Soderback , E and Bjork , M . 2005 . Photosynthesis rates in cyanobacteria-dominated sub-tidal biofilms near Zanzibar, Tanzania . Estuarine Coastal and Shelf Science , 63 : 439 – 446 .
   Web of Science ®Google Scholar
• Marquardt , J and Palinska , KA . 2007 . Genotypic and phenotypic diversity of cyanobacteria assigned to the genus Phormidium (Oscillatoriales) from different habitats and geographical sites . Archives of Microbiology , 187 : 397 – 413 .
   PubMed Web of Science ®Google Scholar
• Nadeau , TL , Milbrandt , EC and Castenholz , RW . 2001 . Evolutionary relationships of cultivated Antarctic oscillatorians (cyanobacteria) . Journal of Phycology , 37 : 650 – 654 .
   Web of Science ®Google Scholar
• Nagarkar , S , Williams , GA , Subramanian , G and Saha , SK . 2004 . Cyanobacteria-dominated biofilms: a high quality food resource for intertidal grazers . Hydrobiologia , 512 : 89 – 95 .
   Web of Science ®Google Scholar
• Paerl , HW , Joye , SB and Fitzpatrick , M . 1993 . Evaluation of nutrient limitation of CO2 and N2 fixation in marine microbial mats . Marine Ecology Progress Series , 101 : 297 – 306 .
   Web of Science ®Google Scholar
• Paul , VJ , Thacker , RW , Bank , K and Golubic , S . 2005 . Benthic cyanobacterial bloom impacts on the reefs of South Florida (Broward County, USA) . Coral Reefs , 24 : 693 – 697 .
   Web of Science ®Google Scholar
• Pichon , M . 1978 . Recherches sur les peuplements à dominance d'anthozoaires dans les récifs coralliens de Tuléar (Madagascar) . Atoll Research Bulletin , 222 : 1 – 447 .
   Google Scholar
• Richert , L , Golubic , S , De Le Gue , R , Herve , A and Payri , C . 2006 . Cyanobacterial populations that build ‘kopara’ microbial mats in Rangiroa, Tuamotu Archipelago, French Polynesia . European Journal of Phycology , 41 : 259 – 279 .
   Web of Science ®Google Scholar
• Severin , I and Stal , LJ . 2008 . Light dependency of nitrogen fixation in a coastal cyanobacterial mat . ISME Journal , 2 : 1077 – 1088 .
   PubMed Web of Science ®Google Scholar
• Severin , I and Stal , LJ . 2010a . “ Diazotrophic microbial mats ” . In Microbial Mats. Modern and Ancient Microorganisms in Stratified Systems , Edited by: Seckbach , J. and Oren , A. 323 – 339 . Springer : Berlin .
   Google Scholar
• Severin , I and Stal , LJ . 2010b . NifH expression by five groups of phototrophs compared with nitrogenase activity in coastal microbial mats . FEMS Microbiology Ecology , 73 : 55 – 67 .
   PubMed Web of Science ®Google Scholar
• Shashar , N , Feldstein , T , Cohen , Y and Loya , Y . 1994 . Nitrogen fixation (acetylene reduction) on a coral reef . Coral Reefs , 13 : 171 – 174 .
   Web of Science ®Google Scholar
• Sournia , A . 1976 . Ecologie et productivité d'une Cyanophycée en milieu corallien: Oscillatoria limosa Agardh . Phycologia , 15 : 363 – 366 .
   Google Scholar
• Sprachta , S , Camoin , G , Golubic , S and Le Campion , T . 2001 . Microbialites in a modern lagoonal environment: nature and distribution, Tikehau atoll (French Polynesia) . Palaeogeography, Palaeoclimatology, Palaeoecology , 175 : 103 – 124 .
   Web of Science ®Google Scholar
• Staal , M , Hekkert , STL , Brummer , GJ , Veldhuis , M , Sikkens , C , Persijn , S and Stal , LJ . 2007 . Nitrogen fixation along a north-south transect in the eastern Atlantic Ocean . Limnology and Oceanography , 52 : 1305 – 1316 .
   Web of Science ®Google Scholar
• Staal , M , Meysman , FJR and Stal , LJ . 2003 . Temperature excludes N2-fixing heterocystous cyanobacteria in the tropical oceans . Nature , 425 : 504 – 507 .
   PubMed Web of Science ®Google Scholar
• Stal , L . 2002 . “ Cyanobacterial mats and stromatolites ” . In The Ecology of Cyanobacteria, their Diversity in Time and Space , Edited by: Whitton , B. and Potts , M. 61 – 120 . Dordrecht : Kluwer Academic Publishers .
   Google Scholar
• Stevenson , BS and Waterbury , JB . 2006 . Isolation and identification of an epibiotic bacterium associated with heterocystous Anabaena cells . Biological Bulletin , 210 : 73 – 77 .
   PubMed Web of Science ®Google Scholar
• Stewart , WDP , Fitzgerald , GP and Burris , RH . 1967 . In situ studies on N2 fixation using the acetylene reduction technique . Proceedings of the National Academy of Sciences USA , 58 : 2071 – 2078 .
   PubMed Web of Science ®Google Scholar
• Stulp , BK and Stam , WT . 1985 . Taxonomy of the genus Anabaena (Cyanophyceae) based on morphological and genotypic criteria . Archiv für Hydrobiologie, Supplement , 71 ( Algological Studies, 38/39 ) : 257 – 268 .
   Google Scholar
• Taton , A , Grubisic , S , Brambilla , E , De Witt , R and Wilmotte , A . 2003 . Cyanobacterial diversity in natural and artificial microbial mats of Lake Fryxell (McMurdo Dry Valleys, Antarctica): a morphological and molecular approach . Applied and Environmental Microbiology , 69 : 5157 – 5169 .
   PubMed Web of Science ®Google Scholar
• Thacker , RW and Paul , VJ . 2004 . Morphological, chemical, and genetic diversity of tropical marine cyanobacteria Lyngbya spp. and Symploca spp. (Oscillatoriales) . Applied and Environmental Microbiology , 70 : 3305 – 3312 .
   PubMed Web of Science ®Google Scholar
• Umezaki , I . 1961 . The marine blue-green algae of Japan . Memoirs of the College of Agriculture, Kyoto University , 83 : 1 – 150 .
   Google Scholar
• Vasseur , P , Gabrie , C and Harmelin-Vivien , M . 1988 . “ State of coral reefs and mangroves of the Tulear region (SW Madagascar): assessment of human activities and suggestions for management ” . In Proceedings of the 6th International Coral Reef Symposium, Vol. 2, Contributed Papers , Edited by: Choat , J.H. , Barnes , D. , Borowitzka , M.A. , Coll , J.C. , Davies , P.J. , Flood , P. , Hatcher , B.G. , Hopley , D. , Hutchings , P.A. , Kinsey , D. , Orme , G.R. , Pichon , M. , Sale , P.F. , Sammarco , P. , Wallace , C.C. , Wilkinson , C. , Wolanski , E. and Bellwood , O. 421 – 426 . Australia : Townsville .
   Google Scholar
• Webb , KL , DuPaul , WD , Wiebe , W , Sottile , W and Johannes , RE . 1975 . Enewetak (Eniwetok) atoll: aspects of the nitrogen cycle on a coral reef . Limnology and Oceanography , 20 : 198 – 210 .
   Web of Science ®Google Scholar
• Welschmeyer , NA . 1994 . Fluorometric analysis of chlorophyll a in the presence of chlorophyll b and pheopigments . Limnology and Oceanography , 39 : 1985 – 1992 .
   Web of Science ®Google Scholar