Taxonomic relationship between two small-sized Chaetoceros species (Bacillariophyta): C. tenuissimus and C. salsugineus, and comparison with C. olympicus sp. nov. from Catalan coastal waters (NW Mediterranean)

References

• Arin, L., Guillén, J., Segura-Noguera, M. & Estrada, M. (2013). Open sea hydrographic forcing of nutrients and phytoplankton dynamics in a Mediterranean coastal ecosystem. Estuarine, Coastal and Shelf Science, 133: 116–128.
   Web of Science ®Google Scholar
• Assmy, P., Hernández-Becerril, D.U. & Montresor, M. (2008). Morphological variability and life cycle traits of the type species of the diatom genus Chaetoceros, C. dichaeta. Journal of Phycology, 44: 152–163.
   PubMed Web of Science ®Google Scholar
• Balzano, S., Percopo, I., Siano, R., Gourvil, P., Chanoine, M., Marie, D., Vaulot, D. & Sarno, D. (2017). Morphological and genetic diversity of Beaufort Sea diatoms with high contributions from the Chaetoceros neogracilis species complex. Journal of Phycology, 53: 161–187.
   PubMed Web of Science ®Google Scholar
• Baytut, Ö., Moestrup, Ø., Lundholm, N. & Gönülol, A. (2013). Contributions to the diatom flora of the Black Sea from ultrastructural and molecular studies: new records of Skeletonema marinoi, Pseudo-nitzschia pungens var. aveirensis and Chaetoceros tenuissimus for the marine flora of Turkey. Nova Hedwigia, 96: 427–444.
   Web of Science ®Google Scholar
• Booth, B.C., Larouche, P., Bélanger, S., Klein, B., Amiel, D. & Mei, Z-P. (2002). Dynamics of Chaetoceros socialis blooms in the North Waters. Deep-Sea Research II, 49: 5003–5025.
   Web of Science ®Google Scholar
• Bosak, S. (2013). Taxonomy and ecology of the planktonic diatom family Chaetocerotaceae (Bacillariophyta) from the Adriatic Sea. Doctoral Thesis, University of Zagreb, 1–256.
   Google Scholar
• Bosak, S., Gligora Udovič, M. & Sarno, D. (2015). Morphological study of Chaetoceros wighamii Brightwell (Chaetocerotaceae, Bacillariophyta) from Lake Vrana, Croatia. Acta Botanica Croatica, 74: 233–244.
   Web of Science ®Google Scholar
• Bosak, S. & Sarno, D. (2017). The planktonic diatom genus Chaetoceros Ehrenberg (Bacillariophyta) from the Adriatic Sea. Phytotaxa, 314: 001–044.
   Web of Science ®Google Scholar
• Brunel, J. (1972). Orientation of setae in the genus Chaetoceros, in regard to the apical axis. Journal of the Marine Biological Association of India, 14: 315–327.
   Google Scholar
• Capella-Gutiérrez, S., Silla-Martínez, J.M. & Gabaldón, T. (2009). trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics, 25: 1972–1973.
   PubMed Web of Science ®Google Scholar
• Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. (2012). jModelTest 2: more models, new heuristics and high-performance computing. Nature Methods, 9: 772.
   PubMed Web of Science ®Google Scholar
• De Luca, D., Sarno, D., Piredda, R. & Kooistra, W.H.C.F. (2019a). A multigene phylogeny to infer the evolutionary history of Chaetocerotaceae (Bacillariophyta). Molecular Phylogenetics Evolution, 140: 106575.
   PubMed Web of Science ®Google Scholar
• De Luca, D., Kooistra, W.H.C.F., Sarno, D., Gaonkar, C.C. & Piredda, R. (2019b). Global distribution and diversity of Chaetoceros (Bacillariophyta, Mediophyceae): integration of classical and novel strategies. PeerJ. doi: 10.7717/peerj.7410.
   PubMed Web of Science ®Google Scholar
• Degerlund, M., Huseby, S., Zingone, A., Sarno, D. & Landfald, B. (2012). Functional diversity in cryptic species of Chaetoceros socialis Lauder (Bacillariophyceae). Journal of Plankton Research, 34: 416–431.
   Web of Science ®Google Scholar
• DeLong, E.F. (1992). Archaea in coastal marine environments. Proceedings of the National Academy of Sciences USA, 89: 5685–5689.
   Google Scholar
• Gaonkar, C.C., Kooistra, W.H.C.F., Lange, C.B., Montresor, M. & Sarno, D. (2017). Two new species in the Chaetoceros socialis complex (Bacillariophyta): C. sporotruncatus and C. dichatoensis, and characterization of its relatives, C. radicans and C. cinctus. Journal of Phycology, 53: 889–907.
   PubMed Web of Science ®Google Scholar
• Gaonkar, C.C., Piredda, R., Minucci, C., Mann, D.G., Montresor, M., Sarno, D. & Kooistra, W.H.C.F. (2018). Annotated 18S and 28S rDNA reference sequences of taxa in the planktonic diatom family Chaetocerotaceae. PLoS ONE, 13: e0208929.
   PubMed Web of Science ®Google Scholar
• Grasshoff, K., Kremling, K. & Ehrhardt, M. (1999). Methods of Seawater Analysis. Verlag Wiley-VCH, Weinheim.
   Google Scholar
• Guerrero, E., Abelló, P., Lombarte, A., Villanueva, R., Ramón, M., Sabatés, A. & Santos, R. (2020). Biological Reference Collections ICM-CSIC. v1.28. Institute of Marine Sciences (ICM-CSIC). Dataset/Occurrence. https://doi.org/10.15470/qlqqdx.
   Google Scholar
• Guiry, M.D. & Guiry, G.M. (2021). AlgaeBase. World-wide electronic publication, National University of Ireland, Galway. http://www.algaebase.org.
   Google Scholar
• Hasle, G.R. & Syvertsen, E.S. (1997). Marine diatoms. In Identifying Marine Phytoplankton ( Tomas, C.R., editor). Academic Press, London.
   Google Scholar
• Hernández-Becerril, D.U. (1991). The morphology and taxonomy of the planktonic diatom Chaetoceros coarctatus Lauder (Bacillariophyceae). Diatom Research, 6: 281–287.
   Google Scholar
• Hernández-Becerril, D.U. (1996). A morphological study of Chaetoceros species (Bacillariophyta) from the plankton of the Pacific Ocean of Mexico. Bulletin of the Natural History Museum of London, 26: 1–73.
   Google Scholar
• Hernández-Becerril, D.U. & Flores Granados, C. (1998). Species of the diatom genus Chaetoceros (Bacillariophyceae) in the plankton from the southern Gulf of Mexico. Botanica Marina, 41: 505–519.
   Web of Science ®Google Scholar
• Hoppenrath, M., Elbrächter, M. & Drebes, G. (2009). Marine Phytoplankton: Selected Microphytoplankton Species from the North Sea around Helgoland and Sylt. E. Schweizerbart Science Publishers, Stuttgart.
   Google Scholar
• Horner, R.A., Garrison, D.L. & Plumley, F.G. (1997). Harmful algal blooms and red tide problems on the U.S. west coast. Limnology and Oceanography, 45: 1076–1088.
   Google Scholar
• Ichimi, K., Kawamura, T., Yamamoto, A., Tada, K. & Harrison, P.J. (2012). Extremely high growth rate of the small diatom Chaetoceros salsugineus isolated from an estuary in the eastern Seto Inland Sea, Japan. Journal of Phycology, 48: 1284–1288.
   PubMed Web of Science ®Google Scholar
• Katoh, K., Rozewicki, J. & Yamada, K.D. (2019). MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics, 20: 1160–1166.
   PubMed Web of Science ®Google Scholar
• Kooistra, W.H.C.F., Sarno, D., Hernández-Becerril, D.U., Assmy, P., Di Prisco, C. & Montresor, M. (2010). Comparative molecular and morphological phylogenetic analyses of taxa in the Chaetocerotaceae (Bacillariophyta). Phycologia, 49: 471–500.
   Web of Science ®Google Scholar
• Li, Y., Boonprakob, A., Gaonkar, C.C., Kooistra, W.H.C.F., Lange, C.B., Hernández-Becerril, D., Chen, Z., Moestrup, Ø. & Lundholm, N. (2017). Diversity in the globally distributed diatom genus Chaetoceros (Bacillariophyceae): three new species from warm-temperate waters. PLoS ONE, 12: e0168887.
   PubMed Web of Science ®Google Scholar
• Li, Y., Zhu, S., Lundholm, N. & Lü, S. (2015) Morphology and molecular phylogeny of Chaetoceros dayaensis sp. nov. (Bacillariophyceae), characterized by two 90o rotations of the resting spore during maturation. Journal of Phycology, 51: 469–479.
   PubMed Web of Science ®Google Scholar
• Malviya, S., Scalco, E., Audic, S., Vincent, F., Veluchamy, A., Poulain, J., Wincker, P., Iudicone, D., de Vargas, C., Bittner, L., Zingone, A. & Bowler, C. (2016). Insights into global diatom distribution and diversity in the world’s ocean. Proceedings of the National Academy of Sciences USA, 113: E1516–E1525.
   Google Scholar
• Mann, D.G. (2011). Size and sex. In The Diatom World ( Seckbach, J. & Kociolek, J.P., editors). Springer, Cham.
   Google Scholar
• Medlin, L., Elwood, H.J., Stickel, S. & Sogin, M.L. (1988). The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene, 71: 491–499.
   PubMed Web of Science ®Google Scholar
• Meunier, A. (1913). Microplankton de la Mer Flamande. 1ère Partie. Le genre Chaetoceros Ehr. Mémoires du Musée Royal d’Histoire Naturelle de Belgique, 7: 1–58.
   Google Scholar
• Nunn, G.B., Theisen, B.F., Christensen, B. & Arctander, P. (1996). Simplicity-correlated size growth of the nuclear 28S ribosomal RNA D3 expansion segment in the crustacean order Isopoda. Journal of Molecular Evolution, 42: 211–223.
   PubMed Web of Science ®Google Scholar
• Orlova, T.Y. & Aizdaicher, N.A. (2000). Development in culture of the diatom Chaetoceros salsugineus from the Sea of Japan. Russian Journal of Marine Biology, 26: 8–11.
   Google Scholar
• Orlova, T.Y. & Selina, M.S. (1993). Morphology and ecology of the bloom-forming planktonic diatom Chaetoceros salsugineus Takano in the Sea of Japan. Botanica Marina, 36: 123–130.
   Web of Science ®Google Scholar
• Ostenfeld, C.H. (1903). Plankton from the sea around the Færöes. In Botany of the Færöes ( Warming, E., editor). Nordisk Forlag, Copenhagen.
   Google Scholar
• Ribera D’Alcalà, M., Conversano, F., Corato, F., Licandro, P., Mangoni, O., Marino, D., Mazzocchi, M.G., Modigh, M., Montresor, M., Nardella, M., Saggiomo, V., Sarno, D. & Zingone, A. (2004) Seasonal patterns in plankton communities in a pluriannual time series at a coastal Mediterranean site (Gulf of Naples): an attempt to discern recurrences and trends. Scientia Marina, 68(SI): 65–83.
   Google Scholar
• Rines, J.E.B. & Hargraves, P.E. (1988). The Chaetoceros Ehrenberg (Bacillariophyceae) Flora of Narragansett Bay, Rhode Island, USA. Bibliotheca Phycologica, Berlin.
   Google Scholar
• Rines, J.E.B. & Theriot, E.C. (2003). Systematics of Chaetocerotaceae (Bacillariophyceae). I. A phylogenetic analysis of the family. Phycological Research, 51: 83–98.
   Google Scholar
• Ronquist, F., Teslenko, M., Van Der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012). MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice across a Large Model Space. Systematic Biology, 61: 539–542.
   PubMed Web of Science ®Google Scholar
• Sánchez Castillo, P.M., Ubierna Leon, M.A. & Round, F.E. (1992). Estudio de Chaetoceros wighamii Brightwell: un taxon mal interpretado. Diatom Research, 22: 441–448.
   Google Scholar
• Sar, E.A., Hernández-Becerril, D.U. & Sunesen, I. (2002). A morphological study of Chaetoceros tenuissimus Meunier, a little-known planktonic diatom, with a discussion of the section Simplicia, subgenus Hyalochaete. Diatom Research, 17: 327–335.
   Web of Science ®Google Scholar
• Scholin, C.A., Herzog, M., Sogin, M. & Anderson, D.M. (1994) Identification of group- and strain-specific genetic markers for globally distributed Alexandrium (Dinophyceae). II. Sequence analysis of a fragment of the LSU rRNA gene. Journal of Phycology, 30: 999–1011.
   Web of Science ®Google Scholar
• Shevchenko, O.G. & Orlova, T.Y. (2010). Morphology and ecology of the bloom-forming diatom Chaetoceros contortus from Peter the Great Bay, Sea of Japan. Russian Journal of Marine Biology, 36: 243–251.
   Web of Science ®Google Scholar
• Shevchenko, O.G., Orlova, T.Y. & Hernández-Becerril, D.U. (2006). The genus Chaetoceros (Bacillariophyta) from Peter the Great Bay, Sea of Japan. Botanica Marina, 49: 236–258.
   Web of Science ®Google Scholar
• Stamatakis, A. (2014). RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 30: 1312–1313.
   PubMed Web of Science ®Google Scholar
• Takano, H. (1983). New and rare diatoms from Japanese marine waters. X. A new Chaetoceros common in estuaries. Bulletin of Tokai Regional Fisheries Research Laboratory, 110: 1–11.
   Google Scholar
• Throndsen, J. (1978). Preservation and storage. In Phytoplankton Manual (Sournia, A. editor), 69–74. UNESCO, Paris.
   Google Scholar
• Tomaru, Y., Toyoda, K. & Kimura, K. (2018). Occurrence of the planktonic bloom-forming marine diatom Chaetoceros tenuissimus Meunier and its infectious viruses in western Japan. Hydrobiologia, 805: 221–230.
   Web of Science ®Google Scholar
• Treasurer, J.W., Hannah, F. & Cox, D. (2003). Impact of a phytoplankton bloom on mortalities and feeding response of framed Atlantic salmon, Salmo salar, in west Scotland. Aquaculture, 218: 103–113.
   Web of Science ®Google Scholar
• Trigueros, J.M., Orive, E. & Arriluzea, J. (2002). Observations on Chaetoceros salsugineus (Chaetocerotales, Bacillariophyceae): first record of this bloom-forming diatom in a European estuary. European Journal of Phycology, 37: 571–578.
   Web of Science ®Google Scholar
• Utermöhl, H. (1958). Zur Vervollkommung der quantitativen Phytoplankton-Methodik. Mitteilungen. Internationale Vereiningung fuer Theoretische und Angewandte Limnologie, 9: 1–38.
   Google Scholar
• Yentsch, C.S. & Menzel, D.W. (1963). A method for the determination of phytoplankton chlorophyll and phaeophytin by fluorescence. Deep-Sea Research, 10: 221–231.
   Google Scholar