New species Chara oryzae and a new section Corillionia of Chara (Charales, Charophyceae) from European Mediterranean rice fields

References

• Abdelahad, N. & Piccoli, F. (2017). Report on charophytes from rice fields in northern Italy including the alien species Chara fibrosa ssp. Benthamii. Plant Biosystems, 152: 599–603.
   Google Scholar
• Akaike, H. (1974). A new look at the statistical model identification. IEEE Transactions on Automatic Control, 19: 716–723.
   Web of Science ®Google Scholar
• Avetta, C. (1898). Nuova specie di Chara (Chara pelosiana mihi). Malpighia, 12: 229–235.
   Google Scholar
• Bonfield, J.K., Smith, K.F. & Staden, R. (1995). A new DNA sequence assembly program. Nucleic Acids Research, 23: 4992–4999.
   PubMed Web of Science ®Google Scholar
• Carretero, J.L. (1987). Rice field flora and vegetation in the provinces of Valencia and Tarragona. Collectanea Botanica, 17: 113–124.
   Google Scholar
• Casanova, M.T. (2009). An overview of Nitella in Australia (Characeae, Charophyta). Australian Systematic Botany, 22: 192–218.
   Web of Science ®Google Scholar
• Casanova, M.T. & Karol, K.G. (2014). A revision of Chara sect. Protochara, comb. et stat. nov. (Characeae: Charophyceae). Australian Systematic Botany, 27: 23–37.
   Web of Science ®Google Scholar
• Casanova, M.T. & Nicol, J.M. (2009). Chara canescens (Characeae, Charophyceae) in the southern hemisphere. Charophytes, 1: 55–60.
   Google Scholar
• Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. (2012). jModelTest 2: more models, new heuristics and parallel computing. Nature methods, 9: 772.
   PubMed Web of Science ®Google Scholar
• Echt, C.S., Erdahl, L.A. & McCoy, T.J. (1992). Genetic segregation of random amplified polymorphic DNA in diploid cultivated alfalfa. Genome, 35: 84–87.
   PubMed Web of Science ®Google Scholar
• Fanyan, G.G., Sheudzhen, A.Kh., Vlasov, V.G., Kharitonov, E.M., Bondareva, T.N. & Fanyan, A.G. (2001). Algal flora of rice fields of Kuban. GURIPP ‘Adygeya’, Maykop, 580 pp. [In Russian].
   Google Scholar
• Ferrero, A. & Vidotto, F. (2010). History of rice in Europe. In Rice – Origin, Antiquity and History (Sharma, S.D., editor), 341–372. Science Publishers – CRC Press, Enfield.
   Google Scholar
• Fernando, C.H., Göltenboth, F. & Margraf, J. (2005). Aquatic Ecology of Rice Fields: A Global Perspective. A Third Millenium Book. Volumes Publishing, Kitchener, 472 pp.
   Google Scholar
• Forés, E. & Comín, F.A. (1992). Ricefields, a limnological perspective. Limnetica, 10: 101–109.
   Google Scholar
• Frame, P.W. (1974). Unusual branchlet development in the genus Chara L. (Charophyta). Botanical Journal of the Linnean Society, 69: 309–312.
   Web of Science ®Google Scholar
• Galtier, N., Gouy, M. & Gaultier, C. (1996). Seaview and phylo-win: two graphic tools for sequence alignment and molecular phylogeny. Computer Applications in the Biosciences, 12: 543–548.
   PubMedGoogle Scholar
• Groves, J. & Stephens, E.L. (1926). New and noteworthy South African Charophyta I. Transactions of the Royal Society of South Africa, 13: 145–158, pls 12–15.
   Google Scholar
• Guerlesquin, M. & Vaquer, A. (1980). Quelques observations biologiques et floristiques sur les rizières de Camargue: biotopes à Characées. Bulletin d’Ecologie, 11: 113–124.
   Google Scholar
• Han, F.S. & Li, Y.Y., editors (1994). Flora algarum sinicarum aquae dulcis. Tomus 3. Charophyta/Consilio Florarum Cryptogamarum Sinicarum Academiae Sinicae edita. Science Press, Beijing, 267 pp. [In Chinese].
   Google Scholar
• Hirose, H. & Yamagishi, T., editors (1977). Illustrations of the Japanese Fresh-water Algae. Uchidarokakuho Publishing, Tokyo, 933 pp. [In Japanese].
   Google Scholar
• Hollerbach, M.M. (1960). De speciebus novis generis Chara e sectione Haplostephanae Triplostichae. Botanicheskie materialy otdela sporovyh rastenii Botanicheskogo Instituta imeni V. L. Komarova Akademii Nauk SSSR, Moscow, Leningrad, 13: 101–107. [In Russian and Latin].
   Google Scholar
• Huelsenbeck, J.P. & Ronquist, F. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17: 754–755.
   PubMed Web of Science ®Google Scholar
• Ionescu-Ţeculescu, V. & Chirilă, C. (1971). Contribuţii la cunoaşterea algelor din orezăriile de la Chirnogi (Ilfov). Analele Universităţii Bucureşti. Biologie vegetală. Bucharest, 20: 123–130.
   Google Scholar
• Karol, K.G. (2004). Phylogenetic Studies of the Charales: The Closest Living Relatives of Land Plants. PhD thesis, University of Maryland, USA, 164 pp.
   Google Scholar
• Kiselev, K.V., Dubrovina, A.S. & Tyunin, A.P. (2015). The methylation status of plant genomic DNA influences PCR efficiency. Journal of Plant Physiology, 175: 59–67.
   PubMed Web of Science ®Google Scholar
• Kozlov, A.M., Darriba, D., Flouri, T., Morel, B. & Stamatakis, A. (2019). RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference. Bioinformatics, 35: 4453–4455.
   PubMed Web of Science ®Google Scholar
• Langangen, A. (2015). Some finds of charophytes from East Africa (Zambia, Tanzania, Kenya and Somalia). Acta Musei Nationalis Pragae Series B – Historia Naturalis, 71: 239–248.
   Google Scholar
• Larkin, D.J., Monfils, A.K., Boissezon, A., Sleith, R.S., Skawinski, P.M., Welling, C.H., Cahill, B.C. & Karol, K.G. (2018). Biology, ecology, and management of starry stonewort (Nitellopsis obtusa; Characeae): a red-listed Eurasian green alga invasive in North America. Aquatic Botany, 148: 15–24.
   Web of Science ®Google Scholar
• Librado, P. & Rozas, J. (2009). DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25: 1451–1452.
   PubMed Web of Science ®Google Scholar
• Mouronval, J.B., Baudouin, S., Borel, N., Soulié-Märsche, I., Klesczewski, M. & Grillas, P. (2015). Guide des Characées de France Méditerranéenne. Office National de la Chasse et Faune Sauvage, Paris, 211 pp.
   Google Scholar
• Nat, E., Raabe, U., Romanov, R., Schubert, H. & Stewart, N. (2017). A book about the charophytes of Europe. IRGC News, 28: 21–22.
   Google Scholar
• Nowak, P., Schubert, H. & Schaible, R. (2016). Molecular evaluation of the validity of the morphological characters of three Swedish Chara sections: Chara, Grovesia, and Desvauxia (Charales, Charophyceae). Aquatic Botany, 134: 113–119.
   Web of Science ®Google Scholar
• Pérez, W., Hall, J.D., McCourt, R.M. & Karol, K.G. (2014). Phylogeny of North American Tolypella (Charophyceae, Charophyta) based on plastid DNA sequences with a description of Tolypella ramosissima sp. nov. Journal of Phycology, 50: 776–789.
   PubMed Web of Science ®Google Scholar
• Pryer, K.M., Smith, A.R., Hunt, J.S. & Dubuisson, J.Y. (2001). rbcL data reveal two monophyletic groups of filmy ferns (Filicopsida: Hymenophyllaceae). American Journal of Botany, 88: 1118–1130.
   PubMed Web of Science ®Google Scholar
• Rambaut, A., Drummond, A.J., Xie, D., Baele, G. & Suchard, M.A. (2018). Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Systematic Biology, 67: 901–904.
   PubMed Web of Science ®Google Scholar
• Raus, Th. & Raabe, U. (2002). Paddy weeds – a neglected subject of Greek floristics. In Proceedings of the 9th Scientific Congress May 9–12,2002 Argostoli-Kefalonia, Greece, (Kamari, G., Psaras, G., Kyparrissis, A. & Constaninidis, T., editors), 290–300. Hellenic Botanic Society, Athens.
   Google Scholar
• Romanov, R.E., Gontcharov, A.A. & Barinova, S.S. (2015). Chara globata Mig. (Streptophyta: Charales): rare species revised. Fottea, Olomouc, 15: 39–50.
   Web of Science ®Google Scholar
• Sakayama, H. (2008). Taxonomy of Nitella (Charales, Charophyceae) based on comparative morphology of oospores and multiple DNA marker phylogeny using cultured material (Review). Phycological Research, 56(3): 202–215.
   Google Scholar
• Schneider, S.C., Nowak, P., Ammon, U. von & Ballot, A. (2016). Species differentiation in the genus Chara (Charophyceae): considerable phenotypic plasticity occurs within homogenous genetic groups. European Journal of Phycology, 51: 282–293.
   Web of Science ®Google Scholar
• Soulié-Märsche, I., Triboit, F., Despréaux, M., Rey-Boissezon, A., Laffont-Schwob, I. & Thiéry, A. (2013). Evidence of Chara fibrosa Agardh ex Bruzelius, an alien species in South France. Acta Botanica Gallica, 160: 157–163.
   Web of Science ®Google Scholar
• Stamatakis, A., Hoover, P. & Rougemont, J. (2008). A rapid bootstrap algorithm for the RAxML web servers. Systematic biology, 57: 758–771.
   PubMed Web of Science ®Google Scholar
• Sundaralingam, V.S. (1959). A systematic account of the South Indian Characeae. Proceedings of the Indian Academy of Sciences – Section B 49, 7: 7–51.
   Google Scholar
• Swofford, D.L. (2002). PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods). Version 4. Sunderland, Sinauer Associates, 142 pp.
   Google Scholar
• Thiers, B. (2021). Index Herbariorum: A Global Directory of Public Herbaria and Associated Staff. New York Botanical Garden’s Virtual Herbarium. http://sweetgum.nybg.org/ih/ [ continuously updated].
   Google Scholar
• Torn, K. & Martin, G. (2003). Chara connivens Salzm. ex A. Braun 1835. In Charophytes of the Baltic Sea (Schubert, H. & Blindow, I., editors), 82–88. Gantner, Rugell.
   Google Scholar
• Urbaniak, J. & Kwiatkowski, P. (2019). Taxonomic studies on the Chara section Hartmania in Poland based on morphological and molecular data. PhytoKeys, 135: 71–90.
   PubMedGoogle Scholar
• Urbaniak, J. & Sakayama, H. (2017). Taxonomical analysis of closely related species of Chara L. section Hartmania (Streptophyta: Charales) based on morphological and molecular data. Fottea, 17: 222–239.
   Google Scholar
• Vasconcelos, J.C. (1956). Algas macroscópicas dos arrozais Portugueses. Comissão Reguladora do Comérico de ARROZ (C.R.C.A.), Lisboa.
   Google Scholar
• Watanabe, T. (2018). Paddy fields as artificial and temporal wetland, irrigation in agroecosystems. Gabrijel Ondrašek, IntechOpen. https://www.intechopen.com/chapters/63233.
   Google Scholar
• Wood, R.D. (1965). A revision of the Characeae. I. Monograph of the Characeae. Weinheim, J. Cramer.
   Google Scholar
• Wood, R.D. & Imahori, K. (1964). A Revision of the Characeae. II. Iconograph of the Characeae. Weinheim, J. Cramer.
   Google Scholar
• Wood, R.D. (1978). Charophyta. In Flora of southern Africa, Cryptogams. Vol. 9. (Leistner, O.A., editor), VII + 56 pp. Pretoria, Dept. of Agricultural Technical Services, Botanical Research Institute.
   Google Scholar
• Zurawski, G. & Clegg, M.T. (1987). Evolution of higher-plant chloroplast DNA-encoded genes: implications for structure-function and phylogenetic studies. Annual Review of Plant Physiology, 38: 391–418.
   Google Scholar