727
Views
1
CrossRef citations to date
0
Altmetric
Articles

Cloning and characterization of O-xylosyltransferase gene from Pinctada fucata martensii

, , , &
Pages 408-416 | Received 04 Apr 2019, Accepted 24 Jul 2019, Published online: 05 Aug 2019

References

  • Addadi L , Moradian J , Shay E , Maroudas NG , Weiner S. 1987. A chemical model for the cooperation of sulfates and carboxylates in calcite crystal nucleation: relevance to biomineralization. Proc Natl Acad Sci USA. 84:2732–2736. doi: 10.1073/pnas.84.9.2732
  • Bosman FT , Stamenkovic I. 2003. Functional structure and composition of the extracellular matrix. J Pathol. 200(4):423–428. doi: 10.1002/path.1437
  • Breton C , Bettler E , Joziasse DH , Geremia RA , Imberty A. 1998. Sequence-function relationships of prokaryotic and eukaryotic galactosyltransferases. J Bio Chem. 123:1000–1009.
  • Brunner A , Kolarich D , Voglmeir J , Paschinger K , Wilson IBH. 2006. Comparative characterisation of recombinant invertebrate and vertebrate peptide O-xylosyltransferases. Glycoconj J. 23:543–554. doi: 10.1007/s10719-006-7633-z
  • Busch C , Hofmann F , Selzer J , Munro S , Jeckel D , Aktories K. 1998. A common motif of eukaryotic glycosyltransferases is essential for the enzyme activity of large clostridial cytotoxins. J Biol Chem. 273:19566–19572. doi: 10.1074/jbc.273.31.19566
  • Charnock SJ , Davies GJ. 1999. Structure of the nucleotide-diphospho-sugar transferase, SpsA from Bacillus subtilis, in native and nucleotide-complexed forms. Biochemistry. 38:6380–6385. doi: 10.1021/bi990270y
  • Cuif JP , Dauphin Y. 2005. The Environment Recording Unit in coral skeletons – a synthesis of structural and chemical evidences for a biochemically driven, stepping-growth process in fibres. Biogeosciences. 2:61–73. doi: 10.5194/bg-2-61-2005
  • Cuif JP , Dauphin Y , Doucet J , Salome M , Susini J. 2003. XANES mapping of organic sulfate in three scleractinian coral skeletons. Geochim Cosmochim Acta. 67:75–83. doi: 10.1016/S0016-7037(02)01041-4
  • Dauphin Y , Cuif JP , Salome M , Susini J , Williams CT. 2006. Microstructure and chemical composition of giant avian eggshells. Anal Bioanal Chem. 386:1761–1771. doi: 10.1007/s00216-006-0784-8
  • Dauphin Y , Cuif JP , Salome C , Susini J. 2005. Speciation and distribution of sulfur in a mollusk shell as revealed by in situ maps using X-ray absorption near-edge structure (XANES) spectroscopy at the SK-edge. Am Mineral. 90:1748–1758. doi: 10.2138/am.2005.1640
  • Du X , Fan G , Jiao Y , Zhang H , Guo X , Huang R , Zheng Z , Bian C , Deng Y , Wang Q , et al. 2017. The pearl oyster Pinctada fucata martensii genome and multi-omic analyses provide insights into biomineralization. Gigascience. 6:1–12. doi: 10.1093/gigascience/gix059
  • Dziedzic D , Wegrzyn G , Jakobkiewicz-Banecka J. 2010. Impairment of glycosaminoglycan synthesis in mucopolysaccharidosis type IIIA cells by using siRNA: a potential therapeutic approach for Sanfilippo disease. Eur J Hum Genet. 18:200–205. doi: 10.1038/ejhg.2009.144
  • Eames BF , Yan Y , Swartz ME , Levic DS , Knapik EW , Postlethwait JH , Kimmel CB. 2011. Mutations in fam20b and xylt1 reveal that cartilage matrix controls timing of endochondral ossification by inhibiting chondrocyte maturation. Plos Genet. 7:e10022468. doi: 10.1371/journal.pgen.1002246
  • Elder BD , Athanasiou KA. 2008. Synergistic and additive effects of hydrostatic pressure and growth factors on tissue formation. Plos One. 3:e23416. doi: 10.1371/journal.pone.0002341
  • Fang D , Xu G , Hu Y , Pan C , Xie L , Zhang R. 2011. Identification of genes directly involved in shell formation and their functions in pearl oyster, Pinctada fucata . Plos One. 6:e218607.
  • Farre B , Dauphin Y. 2009. Lipids from the nacreous and prismatic layers of two Pteriomorphia mollusc shells. Comp Biochem Physiol B Biochem Mol Biol. 152:103–109. doi: 10.1016/j.cbpb.2008.10.003
  • Fernandez MS , Arriagada K , Arias JL. 2007. SEM localization of proteoglycans in abalone shell (Haliotis rufescens). Microsc Microanal. 13:1462–1463. doi: 10.1017/S1431927607071747
  • Furuhashi T , Miksik I , Smrz M , Germann B , Nebija D , Lachmann B , Noe C. 2010. Comparison of aragonitic molluscan shell proteins. Comp Biochem Physiol B Biochem Mol Biol. 155:195–200. doi: 10.1016/j.cbpb.2009.11.007
  • Gotting C , Muller S , Schottler M , Schon S , Prante C , Brinkmann T , Kuhn J , Kleesiek K. 2004. Analysis of the DXD motifs in human xylosyltransferase I required for enzyme activity. J Biol Chem. 279:42566–42573. doi: 10.1074/jbc.M401340200
  • Gotting C , Sollberg S , Kuhn J , Weilke C , Huerkamp C , Brinkmann T , Krieg T , Kleesiek K. 1999. Serum xylosyltransferase: a new biochemical marker of the sclerotic process in systemic sclerosis. J Invest Dermatol. 112:919–924. doi: 10.1046/j.1523-1747.1999.00590.x
  • Hao R , Zheng Z , Wang Q , Du X , Deng Y , Huang R. 2018. Molecular and functional analysis of PmCHST1b in nacre formation of Pinctada fucata martensii . Comp Biochem Physiol B Biochem Mol Biol. 225:13–20. doi: 10.1016/j.cbpb.2018.06.007
  • Hao R , Zheng Z , Wang Q , Du X , Deng Y. 2019. Integrated application of transcriptomics and metabolomics provides insights into unsynchronized growth in pearl oyster Pinctada fucata martensii . Sci Total Environment. 666:46–56. doi: 10.1016/j.scitotenv.2019.02.221
  • Kakoi S , Kin K , Miyazaki K , Wada H. 2008. Early development of the Japanese spiny oyster (Saccostrea kegaki): characterization of some genetic markers. Zoolog Sci. 25:455–464. doi: 10.2108/zsj.25.455
  • Kearns AE , Campbell SC , Westley J , Schwartz NB. 1991. Initiation of chondroitin sulfate biosynthesis: a kinetic analysis of UDP-D-xylose: core protein beta-D-xylosyltransferase. Biochemistry. 30:7477–7483. doi: 10.1021/bi00244a016
  • Kim DH , Rossi JJ. 2008. RNAi mechanisms and applications. Biotechniques. 44:613–616. doi: 10.2144/000112792
  • Kinoshita S , Wang N , Inoue H , Maeyama K , Okamoto K , Nagai K , Kondo H , Hirono I , Asakawa S , Watabe S. 2011. Deep sequencing of ESTs from nacreous and prismatic layer producing tissues and a screen for novel shell formation-related genes in the pearl oyster. Plos One. 6:e212386.
  • Kjellen L , Lindahl U. 1991. Proteoglycans: structures and interactions. Annu Rev Biochem. 60:443–475. doi: 10.1146/annurev.bi.60.070191.002303
  • Krampitz G , Drolshagen H , Häusle J , Hof-Irmscher K. 1983. Organic matrices of mollusc shells. Biominer Biol Metal Accumulation. 231–247. doi: 10.1007/978-94-009-7944-4_20
  • Kuhn J , Goetting C , Beahm BJ , Bertozzi CR , Faust I , Kuzaj P , Knabbe C , Hendig D. 2015. Xylosyltransferase II is the predominant isoenzyme which is responsible for the steady-state level of xylosyltransferase activity in human serum. Biochem Biophys Res Commun. 459:469–474. doi: 10.1016/j.bbrc.2015.02.129
  • Kuhn J , Gotting C , Schnolzer M , Kempf T , Brinkmann T , Kleesiek K. 2001. First isolation of human UDP-D-xylose: proteoglycan core protein beta-D-xylosyltransferase secreted from cultured JAR choriocarcinoma cells. J Biol Chem. 276:4940–4947. doi: 10.1074/jbc.M005111200
  • Li J , Rancour DM , Allende ML , Worth CA , Darling DS , Gilbert JB , Menon AK , Young WWJ. 2001. The DXD motif is required for GM2 synthase activity but is not critical for nucleotide binding. Glycobiology. 11:217–229. doi: 10.1093/glycob/11.3.217
  • Mariman ECM , Wang P. 2010. Adipocyte extracellular matrix composition, dynamics and role in obesity. Cell Mol Life Sci. 67(8):1277–1292. doi: 10.1007/s00018-010-0263-4
  • Marin F , Luquet G. 2004. Molluscan shell proteins. CR Palevol. 3:469–492. doi: 10.1016/j.crpv.2004.07.009
  • Mis EK , Jr Liem KE , Kong Y , Schwartz NB , Domowicz M , Weatherbee SD. 2014. Forward genetics defines Xylt1 as a key, conserved regulator of early chondrocyte maturation and skeletal length. Dev Biol. 385:67–82. doi: 10.1016/j.ydbio.2013.10.014
  • Miyazaki Y , Nishida T , Aoki H , Samata T. 2010. Expression of genes responsible for biomineralization of Pinctada fucata during development. Comp Biochem Physiol B Biochem Mol Biol. 155:241–248. doi: 10.1016/j.cbpb.2009.11.009
  • Morriss FHJ , Fitzgerald B , Riddle LM. 1985. Fetal cartilage xylosyltransferase activity and skeletal growth in sheep. Pediatr Res. 19:1240–1243. doi: 10.1203/00006450-198512000-00003
  • Munro S , Freeman M. 2000. The notch signalling regulator fringe acts in the Golgi apparatus and requires the glycosyltransferase signature motif DXD. Curr Biol: CB. 10:813–820. doi: 10.1016/S0960-9822(00)00578-9
  • Nudelman F , Gotliv BA , Addadi L , Weiner S. 2006. Mollusk shell formation: mapping the distribution of organic matrix components underlying a single aragonitic tablet in nacre. J Struct Biol. 153:176–187. doi: 10.1016/j.jsb.2005.09.009
  • Reddy KVR , Mangale SS. 2003. Integrin receptors: the dynamic modulators of endometrial function. Tissue Cell. 35(4):260–273. doi: 10.1016/S0040-8166(03)00039-9
  • Rodén L. 1980. Structure and metabolism of connective tissue proteoglycans. Biochem Glycoproteins Proteoglycans. 267–271. doi: 10.1007/978-1-4684-1006-8_7
  • Ruoslahti E. 1989. Proteoglycans in cell regulation. J Biol Chem. 264:13369–13372.
  • Silbert JE , Sugumaran G. 1995. Intracellular membranes in the synthesis, transport, and metabolism of proteoglycans. Biochim Biophys Acta. 1241:371–384. doi: 10.1016/0304-4157(95)00011-9
  • Suzuki M , Saruwatari K , Kogure T , Yamamoto Y , Nishimura T , Kato T , Nagasawa H. 2009. An acidic matrix protein, Pif, is a key macromolecule for nacre formation. Science. 325:1388–1390. doi: 10.1126/science.1173793
  • Tian R , Zheng Z , Huang R , Jiao Y , Du X. 2015. miR-29a participated in nacre formation and immune response by targeting Y2R in Pinctada martensii . Int J Mol Sci 16:29436–29445. doi: 10.3390/ijms161226182
  • Weilke C , Brinkmann T , Kleesiek K. 1997. Determination of xylosyltransferase activity in serum with recombinant human Bikunin as acceptor. Clin Chem. 43:45–51.
  • Weiner S , Hood L. 1975. Soluble protein of the organic matrix of mollusk shells: a potential template for shell formation. Science. 190:987–989. doi: 10.1126/science.1188379
  • Wiggins CA , Munro S. 1998. Activity of the yeast MNN1 alpha-1,3-mannosyltransferase requires a motif conserved in many other families of glycosyltransferases. P Natl Acad Sci Usa. 95:7945–7950. doi: 10.1073/pnas.95.14.7945
  • Wilson I. 2002. Functional characterization of Drosophila melanogaster peptide O-xylosyltransferase, the key enzyme for proteoglycan chain initiation and member of the core 2/I N-acetylglucosaminyltransferase family. J Biol Chem. 277:21207–21212. doi: 10.1074/jbc.M201634200
  • Wilson I. 2004. The never-ending story of peptide O-xylosyltransferase. Cell Mol Life Sci. 61:794–809. doi: 10.1007/s00018-003-3278-2
  • Yan F , Lu S , Jiao Y , Deng Y , Du X , Huang R , Wang Q , Chen W. 2014. Molecular characterization of the BMP7 gene and its potential role in shell formation in Pinctada martensii . Int J Mol Sci. 15:21215–21228. doi: 10.3390/ijms151121215
  • Young SD , Crenshaw MA , King DB. 1977. Mantle protein excretion and calcification in the hardshell clam Mercenaria mercenaria . II. Protein Synthesis Excretion Isolated Mantle Mar Biol. 41:259–262.
  • Zheng Z , Du X , Xiong X , Jiao Y , Deng Y , Wang Q , Huang R. 2017. Pmrunt regulated by Pm-miR-183 participates in nacre formation possibly through promoting the expression of collagen VI-like and Nacrein in pearl oyster Pinctada martensii . Plos One. 12(6):e0178561. doi: 10.1371/journal.pone.0178561
  • Zheng Z , Hao R , Xiong X , Jiao Y , Deng Y , Du X. 2019. Developmental characteristics of pearl oyster Pinctada fucata martensii: insight into key molecular events related to shell formation, settlement and metamorphosis. BMC Genomics. 20:122. doi: 10.1186/s12864-019-5505-8