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Research Article

DNA Methylation may be a testicular plateau adaptation in Tibetan pig

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Pages 62-67 | Received 10 Jun 2019, Accepted 23 Jan 2021, Published online: 10 Feb 2021

References

  • Akeno N, Czyzyk-Krzeska MF, Gross TS, Clemens TL. 2001. Hypoxia induces vascular endothelial growth factor gene transcription in human osteoblast-like cells through the hypoxia-inducible factor-2alpha. Endocrinology. 142(2):959–962. doi:10.1210/endo.142.2.8112.
  • An X, Ma H, Han P, Zhu C, Cao B, Bai Y. 2018. Genome-wide differences in DNA methylation changes in caprine ovaries between oestrous and dioestrous phases. J Anim Sci Biotechnol. 9:85. doi:10.1186/s40104-018-0301-x.
  • Beall CM, Cavalleri GL, Deng L, Elston RC, Gao Y, Knight J, Li C, Li JC, Liang Y, McCormack M, et al. 2010. Natural selection on EPAS1 (HIF2alpha) associated with low hemoglobin concentration in Tibetan highlanders. Proc Natl Acad Sci USA. 107(25):11459–11464. doi:10.1073/pnas.1002443107.
  • Bestor TH. 2000. The DNA methyltransferases of mammals. Hum Mol Genet. 9(16):2395–2402. doi:10.1093/hmg/9.16.2395.
  • Brusselmans K, Compernolle V, Tjwa M, Wiesener MS, Maxwell PH, Collen D, Carmeliet P. 2003. Heterozygous deficiency of hypoxia-inducible factor-2alpha protects mice against pulmonary hypertension and right ventricular dysfunction during prolonged hypoxia. J Clin Invest. 111(10):1519–1527. doi:10.1172/JCI15496.
  • Caires KC, de Avila J, McLean DJ. 2009. Vascular endothelial growth factor regulates germ cell survival during establishment of spermatogenesis in the bovine testis. Reproduction. 138(4):667–677. doi:10.1530/REP-09-0020.
  • Chen BF, Gu S, Suen YK, Li L, Chan WY. 2014. microRNA-199a-3p, DNMT3A, and aberrant DNA methylation in testicular cancer. Epigenetics. 9(1):119–128. doi:10.4161/epi.25799.
  • del Mazo J, Prantera G, Torres M, Ferraro M. 1994. DNA methylation changes during mouse spermatogenesis. Chromosome Res. 2(2):147–152. doi:10.1007/bf01553493.
  • Elmhiri G, Gloaguen C, Grison S, Kereselidze D, Elie C, Tack K, Benderitter M, Lestaevel P, Legendre A, Souidi M. 2018. DNA methylation and potential multigenerational epigenetic effects linked to uranium chronic low-dose exposure in gonads of males and females rats. Toxicol Lett. 282:64–70. doi:10.1016/j.toxlet.2017.10.004.
  • Falck E, Groenhagen A, Muhlisch J, Hempel G, Wunsch B. 2012. Genome-wide DNA methylation level analysis by micellar electrokinetic chromatography and laser-induced fluorescence detection after treatment of cell lines with azacytidine and antifolates. Anal Biochem. 421(2):439–445. doi:10.1016/j.ab.2011.09.027.
  • Feinberg AP. 2007. Phenotypic plasticity and the epigenetics of human disease. Nature. 447(7143):433–440. doi:10.1038/nature05919.
  • Galetzka D, Tralau T, Stein R, Haaf T. 2006. Expression of DNMT3A transcripts and nucleolar localization of DNMT3A protein in human testicular and fibroblast cells suggest a role for de novo DNA methylation in nucleolar inactivation. J Cell Biochem. 98(4):885–894. doi:10.1002/jcb.20798.
  • Goll MG, Bestor TH. 2005. Eukaryotic cytosine methyltransferases. Annu Rev Biochem. 74:481–514. doi:10.1146/annurev.biochem.74.010904.153721.
  • Graham AM, McCracken KG. 2019. Convergent evolution on the hypoxia-inducible factor (HIF) pathway genes EGLN1 and EPAS1 in high-altitude ducks. Heredity (Edinb) 122(6):819–832. doi:10.1038/s41437-018-0173-z.
  • Gruber M, Mathew LK, Runge AC, Garcia JA, Simon MC. 2010. EPAS1 is required for spermatogenesis in the postnatal mouse testis. Biol Reprod. 82(6):1227–1236. doi:10.1095/biolreprod.109.079202.
  • Huan YJ, Wu ZF, Zhang JG, Zhu J, Xie BT, Wang JY, Li JY, Xue BH, Kong QR, Liu ZH. 2016. Alteration of the DNA methylation status of donor cells impairs the developmental competence of porcine cloned embryos. J Reprod Dev. 62(1):71–77. doi:10.1262/jrd.2015-048.
  • Jiang HP, Zhang C, Wang CC, Xu QH. 2015. Cloning of HIF1B and HIF2A to hypoxia in Gymnocypris genes and their expressions response dobula and Schizothorax prenanti. Freshwater Fisheries. 45(5):11–18.
  • Jin L, Mao K, Li J, Huang W, Che T, Fu Y, Tang Q, Liu P, Song Y, Liu R, et al. 2018. Genome-wide profiling of gene expression and DNA methylation provides insight into low-altitude acclimation in Tibetan pigs. Gene. 642:522–532. doi:10.1016/j.gene.2017.11.074.
  • Jones PA, Takai D. 2001. The role of DNA methylation in mammalian epigenetics. Science. 293(5532):1068–1070. doi:10.1126/science.1063852.
  • Kaelin WG, Jr., Ratcliffe PJ, 2008. Oxygen sensing by metazoans: the central role of the HIF hydroxylase pathway. Mol Cell 30(4):393–402. doi:10.1016/j.molcel.2008.04.009.
  • Li C, Li X, Xiao J, Liu J, Fan X, Fan F, Lei H. 2019. Genetic changes in the EPAS1 gene between Tibetan and Han ethnic groups and adaptation to the plateau hypoxic environment. PeerJ. 7:e7943. doi:10.7717/peerj.7943.
  • Li Y, Zhang L, Li Y, Li W, Guo Z, Li R, Hu X, Bao Z, Wang S. 2019. “Dynamics of DNA methylation and DNMT expression during gametogenesis and early development of scallop Patinopecten yessoensis.” Mar Biotechnol (NY) 21(2):196–205. doi:10.1007/s10126-018-09871-w.
  • Livak KJ, Schmittgen TD. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method. Methods. 25(4):402–408. doi:10.1006/meth.2001.1262.
  • Mason K, Liu Z, Aguirre-Lavin T, Beaujean N. 2012. Chromatin and epigenetic modifications during early mammalian development. Anim Reprod Sci. 134(1-2):45–55. doi:10.1016/j.anireprosci.2012.08.010.
  • Pan H, Chen Q, Qi S, Li T, Liu B, Liu S, Ma X, Wang B. 2018. Mutations in EPAS1 in congenital heart disease in Tibetans. Biosci Rep. 38(6):1–7. doi:10.1042/BSR20181389.
  • Peng Y, Cui C, He Y, Ouzhuluobu, Zhang H, Yang D, Zhang Q, Bianbazhuoma, Yang L, He Y, et al. 2017. “Down-regulation of EPAS1 transcription and genetic adaptation of Tibetans to high-altitude hypoxia.” Mol Biol Evol 34(4):818–830. doi:10.1093/molbev/msw280.
  • Petousi N, Croft QP, Cavalleri GL, Cheng HY, Formenti F, Ishida K, Lunn D, McCormack M, Shianna KV, Talbot NP, et al. 2014. Tibetans living at sea level have a hyporesponsive hypoxia-inducible factor system and blunted physiological responses to hypoxia. J Appl Physiol (1985). 116(7):893–904. doi:10.1152/japplphysiol.00535.2013.
  • Ren ZL, Song TZ, Zhang J, Peng WC, He ZZ, Zhao YL. 2017. Effect of rhodiola polysaccharide on frozen semen quality of Tibetan boar and levels of sperm genome DNA methylation. Chin J Vet Sci. 37(7):1385–1388,1393.
  • Rytkonen KT, Akbarzadeh A, Miandare HK, Kamei H, Duan C, Leder EH, Williams TA, Nikinmaa M. 2013. Subfunctionalization of cyprinid hypoxia-inducible factors for roles in development and oxygen sensing. Evolution. 67(3):873–882. doi:10.1111/j.1558-5646.2012.01820.x.
  • Sakai K, Ideta-Otsuka M, Saito H, Hiradate Y, Hara K, Igarashi K, Tanemura K. 2018. Effects of doxorubicin on sperm DNA methylation in mouse models of testicular toxicity. Biochem Biophys Res Commun. 498(3):674–679. doi:10.1016/j.bbrc.2018.03.044.
  • Suzuki MM, Bird A. 2008. DNA methylation landscapes: provocative insights from epigenomics. Nat Rev Genet. 9(6):465–476. doi:10.1038/nrg2341.
  • Tunc O, Tremellen K. 2009. Oxidative DNA damage impairs global sperm DNA methylation in infertile men. J Assist Reprod Genet. 26(9-10):537–544. doi:10.1007/s10815-009-9346-2.
  • Verma A, Rajput S, De S, Kumar R, Chakravarty AK, Datta TK. 2014. Genome-wide profiling of sperm DNA methylation in relation to buffalo (Bubalus bubalis) bull fertility. Theriogenology. 82(5):750–759.e1. doi:10.1016/j.theriogenology.2014.06.012.
  • Wu SD, Zhu J, Li YS, Gan LQ, Yuan XG, Xu MD, Wei GH. 2009. [Di-(2-ethylhexyl) phthalate increases the DNA methylation level of genomes in the mouse testis]. Zhonghua Nan Ke Xue. 15(10):876–881.
  • Wu Y, Strawn E, Basir Z, Halverson G, Guo SW. 2007. Aberrant expression of deoxyribonucleic acid methyltransferases DNMT1, DNMT3A, and DNMT3B in women with endometriosis. Fertil Steril. 87(1):24–32. doi:10.1016/j.fertnstert.2006.05.077.
  • Yaman R, Grandjean V. 2006. Timing of entry of meiosis depends on a mark generated by DNA methyltransferase 3a in testis. Mol Reprod Dev. 73(3):390–397. doi:10.1002/mrd.20430.
  • Yang S, Zhang H, Mao H, Yan D, Lu S, Lian L, Zhao G, Yan Y, Deng W, Shi X, et al. 2011. The local origin of the Tibetan pig and additional insights into the origin of Asian pigs. PLoS One. 6(12):e28215. doi:10.1371/journal.pone.0028215.
  • Yuan X, Li Z, Ye S, Chen Z, Huang S, Zhong Y, Zhang H, Li J, Zhang Z. 2019. Genome-wide DNA methylation analysis of pituitaries during the initiation of puberty in gilts. PLoS One. 14(3):e0212630. doi: 10.1371/journal.pone.0212630
  • Zhao H, Sun P, Fan T, Yang X, Zheng T, Sun C. 2019. The effect of glutamate-induced excitotoxicity on DNA methylation in astrocytes in a new in vitro neuron-astrocyte-endothelium co-culture system. Biochem Biophys Res Commun. 508(4):1209–1214. doi:10.1016/j.bbrc.2018.12.058.
  • Zhao YL, Zhang B, Wang ZX, Zhang HL, Zhang H. 2017. Correlation of the DNA methylation level and HIF2α mRNA expression in Testicle tissue of Tibetan Pig. Chin J Vet Sci. 37(11):2222–2226.