An insight into the ecology, diversity and adaptations of Gordonia species

References

• Ahmad A, Chauhan AK, Javed S, Kumar A. 2014. Desulfurization of thianthrene by a Gordonia sp. IITR100. Biotechnol Lett. 36:2209–2214.
   PubMed Web of Science ®Google Scholar
• Alves L, Matos J, Tenreiro R, Gírio FM. 2008. Evidence for the role of zinc on the performance of dibenzothiophene desulfurization by Gordonia alkanivorans strain 1B. J Ind Microbiol Biotechnol. 35:69–73.
   PubMed Web of Science ®Google Scholar
• Alves L, Paixão SM. 2014a. Fructophilic behaviour of Gordonia alkanivorans strain 1B during dibenzothiophene desulfurization process. New Biotechnol. 31:73–79.
   PubMed Web of Science ®Google Scholar
• Alves L, Paixão SM. 2014b. Enhancement of dibenzothiophene desulfurization by Gordonia alkanivorans strain 1B using sugar beet molasses as alternative carbon source. Appl Biochem Biotechnol. 172:3297–3305.
   PubMed Web of Science ®Google Scholar
• Aoyama K, Kang Y, Yazawa K, Gonoi T, Kamei K, Mikami Y. 2009. Characterization of clinical isolates of Gordonia species in Japanese clinical samples during 1998-2008. Mycopathologia. 168:175–183.
   PubMed Web of Science ®Google Scholar
• Arenskötter M, Bröker D, Steinbüchel A. 2004. Biology of the metabolically diverse genus Gordonia. Appl Environ Microbiol. 70:3195–3204.
   PubMed Web of Science ®Google Scholar
• Bennur T, Khan Z, Kshirsagar R, Javdekar V, Zinjarde S. 2016. Biogenic gold nanoparticles from the actinomycete Gordonia amarae: application in rapid sensing of copper ions. Sens Actuat B. 233:684–690.
   Web of Science ®Google Scholar
• Bhalla TC, Kumari P, Kumar V, Kumar V. Savitri 2016. Synthesis of vanillic acid using whole cell nitrilase of wild and mutant Gordonia terrae. Bioprocess Biosyst Eng. 39:67–73.
   PubMed Web of Science ®Google Scholar
• Brandão PF, Maldonado LA, Ward AC, Bull AT, Goodfellow M. 2001. Gordonia namibiensis sp. nov., a novel nitrile metabolising actinomycete recovered from an African sand. Syst Appl Microbiol. 24:510–515.
   PubMed Web of Science ®Google Scholar
• Breznak JA. 1982. Intestinal microbiota of termites and other xylophagous insects. Annu Rev Microbiol. 36:323–343.
   PubMed Web of Science ®Google Scholar
• Brito-Vega H, Espinisa-Victoria D. 2009. Bacterial diversity in the digestive tract of Earthworm (Oligochaeta). J Biol Sci. 9:192–199.
   Google Scholar
• Bröker D, Arenskötter M, Legatzki A, Nies DH, Steinbüchel A. 2004. Characterization of the 101-kilobase-pair megaplasmid pKB1, isolated from the rubber-degrading bacterium Gordonia westfalica Kb1. J Bacteriol. 186:212–225.
   PubMed Web of Science ®Google Scholar
• Brown LM, Gunasekera TS, Striebich RC, Ruiz ON. 2016. Draft genome sequence of Gordonia sihwensis strain 9, a branched alkane-degrading bacterium. Genome Announc. 4:e00622–16.
   PubMedGoogle Scholar
• Bull AT, Ward AC, Goodfellow M. 2000. Search and discovery strategies for biotechnology: the paradigm shift. Microbiol Mol Biol Rev. 64:573–576.
   PubMed Web of Science ®Google Scholar
• Chatterjee S, Dutta TK. 2003. Metabolism of butyl benzyl phthalate by Gordonia sp. strain MTCC 4818. Biochem Biophys Res Commun. 309:36–43.
   PubMed Web of Science ®Google Scholar
• Chen H-P, Zhu S-H, Casabon I, Hallam SJ, Crocker FH, Mohn WW, Indest KJ, Eltis LD. 2012. Genomic and transcroptomic studies of an RDX (hexahydro-1,3,5-trinitro 1,3,5 trizine)- degrading actinobacterium. Appl Environ Microbiol. 78:7798–7800.
   PubMed Web of Science ®Google Scholar
• Chen LT, Chang JS, Young CC. 2008. Exopolysaccharides produced by Gordonia alkanivorans enhance bacterial degradation activity for diesel. Biotechnol Lett. 30:1201–1206.
   PubMed Web of Science ®Google Scholar
• Collins MD, Goodfellow M, Minnikin DE, Alderson G. 1985. Menaquinone composition of mycolic acid-containing actinomycetes and some sporoactinomycetes. J Appl Bacteriol. 58:77–86.
   PubMedGoogle Scholar
• Cui CH, Liu QM, Kim JK, Sung BH, Kim SG, Kim SC, Im WT. 2013. Identification and characterization of a Mucilaginibacter sp. strain QM49 β-glucosidase and its use in the production of the pharmaceutically active minor ginsenosides (S)-Rh1 and (S)-Rg2). Appl Environ Microbiol. 79:5788–5798.
   PubMed Web of Science ®Google Scholar
• Davila H, Didoli G, Bottasso O, Stanford J. 2011. Maternal immunization with actinomycetales immunomodulators reduces parasitemias in offspring challenged with Trypanosoma cruzi. Immunotherapy. 3:577–583.
   PubMed Web of Science ®Google Scholar
• de Menezes CB, Afonso RS, de Souza WR, Parma M, de Melo IS, Zucchi TD, Fantinatti-Garboggini F. 2016. Gordonia didemni sp. nov. an actinomycete isolated from the marine ascidium Didemnum sp. Antonie Van Leeuwenhoek. 109:297–303.
   PubMed Web of Science ®Google Scholar
• Delegan YA, Vetrov AA, Akimov VN, Titok MA, Filonov AE, Boronin AM. 2016. Thermotolerant oil-degrading bacteria isolated from soil and water of geographically distant regions. Appl Biochem Microbiol. 52:389–396.
   Web of Science ®Google Scholar
• Dhiman SS, Sharma J, Battan B. 2008. Industrial applications and future prospects of microbial xylanases: a review. Bioresources 25:1377–1402.
   Google Scholar
• Dogan I, Pagilla KR, Webster DA, Stark BC. 2006. Expression of Vitreoscilla hemoglobin in Gordonia amarae enhances biosurfactant production. J Ind Microbiol Biotechnol. 33:693–700.
   PubMed Web of Science ®Google Scholar
• Drzyzga O. 2012. The strengths and weaknesses of Gordonia: a review of an emerging genus with increasing biotechnological potential. Crit Rev Microbiol. 38:300–316.
   PubMed Web of Science ®Google Scholar
• Durvasula RV, Sundaram RK, Kirsch P, Hurwitz I, Crawford CV, Dotson E, Beard CB. 2008. Genetic transformation of a Corynebacterial symbiont from the Chagas disease vector Triatoma infestans. Exp Parasitol. 119:94–98.
   PubMed Web of Science ®Google Scholar
• Elfalah HWA, Usup G, Ahmad A. 2013. Anti-microbial properties of secondary metabolites of marine Gordonia tearrae extract. J Agric Sci. 5:94–101.
   Google Scholar
• Flórez LV, Biedermann PHW, Eng T, Kaltenpoth M. 2015. Defensive symbioses of animals with prokaryotic and eukaryotic microorganisms. Nat Prod Rep. 32:904–936.
   PubMed Web of Science ®Google Scholar
• Franzetti A, Bestetti G, Caredda P, Colla PL, Tamburini E. 2008. Surface-active compounds and their role in the access to hydrocarbons in Gordonia strains. FEMS Microbiol Ecol. 63:238–248.
   PubMed Web of Science ®Google Scholar
• Franzetti A, Caredda P, Colla PL, Pintus M, Tamburini E, Papacchini M, Bestetti G. 2009. Cultural factors affecting biosurfactant production by Gordonia sp. BS29. Int Biodeterior Biodegrad. 63:943–947.
   Web of Science ®Google Scholar
• Furneaux RH, Landersjö CL, McCullough JL, Severn WB. 2005. A novel phosphatidylinositol manno-oligosaccharide (dPIM-8) from Gordonia sputi. Carbohydr Res. 340:1618–1624.
   PubMed Web of Science ®Google Scholar
• Fusconi R, Assunção RMN, Guimarães RDM, Filho GR, Machado AEDH. 2010. Exopolysaccharide produced by Gordonia polyisoprenivorans CCT 7137 in GYM commercial medium and sugarcane molasses alternative medium: FT-IR study and emulsifying activity. Carbohydr Polym. 79:403–408.
   Web of Science ®Google Scholar
• Fusconi R, Godinho MJL, Hernández ILC, Bossolan NRS. 2006. Gordonia polyisoprenivorans from groundwater contaminated with landfill leachate in a subtropical area: characterization of the isolate and exopolysaccharide production. Braz J Microbiol. 37:168–174.
   Web of Science ®Google Scholar
• Ge F, Li W, Chen G, Liu Y, Zhang G, Yong B, Wang Q, Wang N, Huang Z, Li W, et al. 2011. Draft genome sequence of Gordonia neofelifaecis NRRL B-59395, a cholesterol-degrading actinomycete. J Bacteriol. 193:5045–5046.
   PubMed Web of Science ®Google Scholar
• Gitzinger M, Kemmer C, Fluri DA, El-Baba MD, Weber W, Fussenegger M. 2011. The food additive vanillic acid controls transgene expression in mammalian cells and mice. Nucleic Acids Res. 40:2–15.
   Web of Science ®Google Scholar
• Gogoleva OA, Nemtseva NV, Bukharin OV. 2012. Catalase activity of hydrocarbon oxidizing bacteria. Appl Biochem Microbiol. 48:552–556.
   Web of Science ®Google Scholar
• Gong JS, Lu ZM, Li H, Shi JS, Zhou ZM, Xu ZH. 2012. Nitrilases in nitrile biocatalysis: recent progress and forthcoming research. Microb Cell Fact. 11:142.
   PubMed Web of Science ®Google Scholar
• Gontang EA, Gaudêncio SP, Fenical W, Jensen PR. 2010. Sequence-based analysis of secondary-metabolite biosynthesis in marine actinobacteria. Appl Environ Microbiol. 76:2487–2499.
   PubMed Web of Science ®Google Scholar
• Goodfellow M, Maldonado LA. 2006. The families Dietziaceae, Gordoniaceae, Nocardiaceae and Tsukamurellaceae. In: Dworkin F, Falkow S, Schleifer KH, Stackebrandt E, editors. The prokaryotes. NewYork, Berlin, Heidelberg: Springer; p. 843–888.
   Google Scholar
• Graça AP, Bondoso J, Gaspar H, Xavier JR, Monteiro MC, Cruz MDL, Oves-Costales D, Francisca Vicente F, Lage OM. 2013. Antimicrobial activity of heterotrophic bacterial communities from the marine sponge Erylus discophorus (Astrophorida, Geodiidae). PLoS One. 8:e78992.
   PubMed Web of Science ®Google Scholar
• Gumiel M, Faria da Mota F, Rizzo V, Sarquis O, Castro D, Lima M, Garcia E, Carels N, Azambuja P. 2015. Characterization of the microbiota in the guts of Triatoma brasiliensis and Triatoma pseudomaculata infected by Trypanosoma cruzi in natural conditions using culture independent methods. Parasit Vectors. 8:245.
   PubMed Web of Science ®Google Scholar
• Hail D, Dowd SE, Bextine B. 2012. Identification and location of symbionts associated with Potato Psyllid (Bactericera cockerelli) lifestages. Environ Entomol. 41:98–107.
   PubMed Web of Science ®Google Scholar
• Hansen GH, Olafsen JA. 1999. Bacterial interactions in early life stages of marine cold water fish. Microb Ecol. 38:1–26.
   PubMed Web of Science ®Google Scholar
• Hao DH, Lin JQ, Song X, Lin JQ, Su YJ, Qu YB. 2008. Isolation, identification, and performance studies of a novel paraffin-degrading bacterium of Gordonia amicalis LH3. Biotechnol Bioproc Eng. 13:61–68.
   Web of Science ®Google Scholar
• Heard J, Harvey E, Johnson BB, Wells JD, Angove MJ. 2008. The effect of filamentous bacteria on foam production and stability. Colloids Surf B: Biointerfaces. 63:21–26.
   PubMed Web of Science ®Google Scholar
• Hernández-Flores LV, Llanderal C, Zares C, Guzmá N, Franco AW, Aranda-Ocampo S. 2015. Bacteria present in Comadia redtenbacheri larvae (Lepidoptera: Cossidae). J Med Entomol. 52:1150–1158.
   PubMed Web of Science ®Google Scholar
• Hiessl S, Böse D, Oetermann S, Eggers J, Pietruszka J, Steinbüchel A. 2014. Latex clearing protein-an oxygenase cleaving poly(cis-1,4-isoprene) rubber at the cis double bonds. Appl Environ Microbiol. 80:5231–5240.
   PubMed Web of Science ®Google Scholar
• Hiessl S, Schuldes J, Thürmer A, Halbsguth T, Bröker D, Angelov A, Liebl W, Daniel R, Steinbüchel A. 2012. Involvement of two latex-clearing proteins during rubber degradation and insights into the subsequent degradation pathway revealed by the genome sequence of Gordonia polyisoprenivorans strain VH2. Appl Environ Microbiol. 80:2874–2887.
   Google Scholar
• Hillesland H, Read A, Subhadra B, Hurwitz I, McKelvey R, Ghosh K, Das P, Durvasula R. 2008. Identification of aerobic gut bacteria from the kala azar vector, Phlebotomus argentipes: a platform for potential paratransgenic manipulation of sand flies. Am J Trop Med Hyg. 79:881–886.
   PubMed Web of Science ®Google Scholar
• Hoberg E, Marschner P, Lieberei R. 2005. Organic acid exudation and pH changes by Gordonia sp. and Pseudomonas fluorescens grown with P adsorbed to goethite. Microbiol Res. 160:177–187.
   PubMed Web of Science ®Google Scholar
• Hong SH, Ryu HW, Kim J, Cho KS. 2011. Rhizoremediation of diesel-contaminated soil using the plant growth-promoting rhizobacterium Gordonia sp. S2RP-17. Biodegradation. 22:593–601.
   PubMed Web of Science ®Google Scholar
• Iida S, Taniguchi H, Kageyama A, Yazawa K, Chibana H, Murata S, Nomura F, Kroppenstedt RM, Mikami Y. 2005. Gordonia otitidis sp. nov., isolated from a patient with external otitis. Int J Syst Evol Microbiol. 55:1871–1876.
   PubMed Web of Science ®Google Scholar
• Ivanova N, Sikorski J, Jando M, Lapidus A, Nolan M, Lucas S, Del Rio TG, Tice H, Copeland A, Cheng J-F, et al. 2010. Complete genome sequence of Gordonia bronchialis type strain (3410). Stand Genomic Sci. 2:19–28.
   PubMed Web of Science ®Google Scholar
• Iwahori K, Tokutomi T, Miyata N, Fujita M. 2001. Formation of stable foam by the cells and culture supernatant of Gordonia (Nocardia) amarae. J Biosci Bioeng. 92:77–79.
   PubMed Web of Science ®Google Scholar
• Jannat-Khah DP, Halsey ES, Lasker BA, Steigerwalt AG, Hinrikson HP, Brown JM. 2009. Gordonia araii infection associated with an orthopaedic device and review of the literature on medical device associated Gordonia infections. J Clin Microbiol. 47:499–502.
   PubMed Web of Science ®Google Scholar
• Jeon BY, Kim BY, Jung IL, Park DH. 2012. Metabolic roles of carotenoid produced by non-photosynthetic bacterium Gordonia alkanivorans SKF120101. J Microbiol Biotechnol. 22:1471–1477.
   PubMed Web of Science ®Google Scholar
• Jiang N, Ying GL, Liu SY, Shen L, Hu J, Dai LJ, Yang XY, Tian G, Su BL. 2014. Amino acid-based biohybrids for nano-shellization of individual desulfurizing bacteria. Chem Commun (Camb). 50:15407–15410.
   PubMed Web of Science ®Google Scholar
• Jin D, Bai Z, Chang D, Hoefel D, Jin B, Wang P, Wei D, Zhuang G. 2012. Biodegradation of di-n-butyl phthalate by an isolated Gordonia sp. strain QH-11: genetic identification and degradation kinetics. J Hazard Mater. 221–222:80–85.
   PubMed Web of Science ®Google Scholar
• Jukes TH, Cantor CR. 1969. Evolution of protein molecules. In: Munro HN, editor. Mammalian protein metabolism. New York: Academic Press; p. 21–132.
   Google Scholar
• Jung E, Park BG, Ahsan MM, Kim J, Yun H, Choi KY, Kim BG. 2016. Production of ω-hydroxy palmitic acid using CYP153A35 and comparison of cytochrome P450 electron transfer system in vivo. Appl Microbiol Biotechnol. 100:10375–10384.
   PubMed Web of Science ®Google Scholar
• Kageyama A, Iida S, Yazawa K, Kudo T, Suzuki S, Koga T, Saito H, Inagawa H, Wada A, Kroppenstedt R, Mikami Y. 2006. Gordonia araii sp. nov. and Gordonia effusa sp. nov., isolated from patients in Japan. Int J Syst Evol Microbiol. 56:1817–1821.
   PubMed Web of Science ®Google Scholar
• Kaltenpoth M. 2009. Actinobacteria as mutualists: general healthcare for insects?. Trends Microbiol. 17:529–535.
   PubMed Web of Science ®Google Scholar
• Kang YQ, Ming H, Gonoi T, Chen Y, Cao Y, Wang YY, Cheng J, Koga T, Mikami Y, Li WJ. 2014. Gordonia iterans sp. nov., isolated from a patient with pneumonia. Int J Syst Evol Microbiol. 64:3520–3525.
   PubMed Web of Science ®Google Scholar
• Kashyap R, Monika, Subudhi E. 2014. A novel thermo alkaliphilic xylanase from Gordonia sp. is salt, solvent and surfactant tolerant. J Basic Microbiol. 54:1342–1349.
   PubMed Web of Science ®Google Scholar
• Kayasth M, Kumar V, Gera R. 2014. Gordonia sp.: a salt tolerant bacterial inoculant for growth promotion of pearl millet under saline soil conditions. 3 Biotech. 4:553–557.
   Google Scholar
• Kempf V, Schmalzing M, Yassin AF, Schaal KP, Baumeister D, Arenskötter M, Steinbchel A, Autenrieth IB. 2004. Gordonia polyisoprenivorans septicemia in a bone marrow transplant patient. Eur J Clin Microbiol Infect Dis. 23:226–228.
   PubMed Web of Science ®Google Scholar
• Khan ST, Izumikawa M, Motohashi K, Mukai A, Takagi M, Shin-Ya K. 2010. Distribution of the 3-hydroxyl-3-methylglutaryl coenzyme A reductase gene and isoprenoid production in marine-derived Actinobacteria. FEMS Microbiol Lett. 304:89–96.
   PubMed Web of Science ®Google Scholar
• Kim HJ, Shin KH, Cha CJ, Hur HG. 2004. Analysis of aerobic and culturable bacterial community structures in earthworm (Eisenia fetida) intestine. Agric Chem Biotechnol. 47:137–142.
   Google Scholar
• Kim JH, Kim SH, Yoon JH, Lee PC. 2014. Carotenoid production from n-alkanes with a broad range of chain lengths by the novel species Gordonia ajoucoccus A2 (T). Appl Microbiol Biotechnol. 98:3759–3768.
   PubMed Web of Science ®Google Scholar
• Klatte S, Rainey FA, Kroppenstedt RM. 1994. Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordona as Gordona aichiensis comb. nov. and Gordona amarae comb. nov. Int J Syst Bacteriol. 44:769–773.
   PubMedGoogle Scholar
• Kondo T, Yamamoto D, Yokota A, Suzuki A, Nagasawa H, Sakuda S. 2000. Gordonan, an acidic polysaccharide with cell aggregation-inducing activity in insect BM-N4 cells, produced by Gordonia sp. Biosci Biotechnol Biochem. 64:2388–2394.
   PubMed Web of Science ®Google Scholar
• König H, Fröhlich J, Hertel H. 2006. Diversity and lignocellulolytic activities of cultured microorganisms. In: König H, Varma A, editor. Intestinal microorganisms of termites and other invertebrates. Berlin, Heidelberg: Springer; p. 271–301.
   Google Scholar
• Kumar V, Bhalla TC. 2013. Transformation of p-hydroxybenzonitrile to p-hydroxybenzoic acid using nitrilase activity of Gordonia terrae. Biocatal Biotransform. 31:42–48.
   Web of Science ®Google Scholar
• Kumar V, Kumar V, Thakur N, Bhalla TC. 2015. Bench scale synthesis of p-hydroxybenzoic acid using whole-cell nitrilase of Gordonia terrae mutant E9. Bioprocess Biosyst Eng. 38:1267–1279.
   PubMed Web of Science ®Google Scholar
• Kummer C, Schumann P, Stackebrandt E. 1999. Gordonia alkanivoranssp. nov., isolated from tar-contaminated soil. Int J Syst Bacteriol. 49:1513–1522.
   PubMedGoogle Scholar
• Lai C, Wang C, Liu C, Tan CK, Lin SH, Liao CH, Chou CH, Huang YT, Lin HI, Hsueh PR. 2010. Infections caused by Gordonia species at a medical centre in Taiwan, 1997 to 2008. Clin Microbiol Infect. 16:1448–1453.
   PubMed Web of Science ®Google Scholar
• Lai CC, Hsieh JH, Tsai HY, Liao CH, Hsueh PR. 2012. Cutaneous infection caused by Gordonia amicalis after a traumatic injury. J Clin Microbiol. 50:1821–1822.
   PubMed Web of Science ®Google Scholar
• Laorrattanasak S, Rongsayamanont W, Khondee N, Paorach N, Soonglerdsongpha S, Pinyakong O, Luepromchai E. 2016. Production and application of Gordonia westfalica GY40 biosurfactant for remediation of fuel oil spill. Water Air Soil Pollut. 227:325.
   Web of Science ®Google Scholar
• le Roes M, Goodwin CM, Meyers PR. 2008. Gordonia lacunae sp. nov., isolated from an estuary. Syst Appl Microbiol. 31:17–23.
   PubMed Web of Science ®Google Scholar
• Lechevalier MP, Lechevalier HA. 1974. Nocardia amarae sp. nov., an actinomycete common in foaming activated sludge. Int J Syst Bacteriol. 24:278–288.
   Google Scholar
• Lee HU, Bae EA, Han MJ, Kim DH. 2005. Hepatoprotective effect of 20(S)-ginsenosides Rg3 and its metabolite 20(S)-ginsenoside Rh2 on tert-butyl hydroperoxide-induced liver injury. Biol Pharm Bull. 28:1992–1994.
   PubMed Web of Science ®Google Scholar
• Lee LH, Zaina N, Azman AS, Eng SK, Goh BH, Yin WF, AbMutalib N, Chan KG. 2014. Diversity and antimicrobial activities of actinobacteria isolated from tropical mangrove sediments in Malaysia. ScientificWorldJournal. 14:698178.
   Google Scholar
• Li J, Zhao GZ, Huang HY, Qin S, Zhu WY, Zhao LX, Xu LH, Zhang S, Li WJ, Strobel G. 2012. Isolation and characterization of culturable endophytic actinobacteria associated with Artemisia annua L. Antonie Van Leeuwenhoek. 101:515–527.
   PubMed Web of Science ®Google Scholar
• Lin Z, Maretta L, Hughen RW, Flores M, Forteza I, Ammon MA, Concepcion GP, Espino S, Olivera BM, Rosenberg G, et al. 2013. Neuroactivediol and acyloin metabolites from cone snail-associated bacteria. Bioorg Med Chem Lett. 23:4867–4869.
   PubMed Web of Science ®Google Scholar
• Linos A, Berekaa MM, Steinbüchel AS, Kim KK, Spröer C, Kroppenstedt RM. 2002. Gordonia westfalica sp. nov., a novel rubber-degrading actinomycete. Int J Syst Bacteriol. 52:1133–1139.
   Google Scholar
• Linos A, Steinbüchel A, Spröer C, Kroppenstedt RM. 1999. Gordonia polyisoprenivorans sp. nov., a rubber-degrading actinomycete isolated from an automobile tyre. Int J Syst Bacteriol. 49:1785–1791.
   PubMedGoogle Scholar
• Maldonado LA, Fragoso-Yáñez D, Pérez-García A, Rosellón-Druker J, Quintana E. 2009. Actinobacterial diversity from marine sediments collected in Mexico. Antonie Van Leeuwenhoek. 95:111–120.
   PubMed Web of Science ®Google Scholar
• May RM. 1988. How many species are there on earth?. Science. 241:1441–1449.
   PubMed Web of Science ®Google Scholar
• Metzger JO, Bornscheuer U. 2006. Lipids as renewable resources: current state of chemical and biotechnological conversion and diversification. Appl Microbiol Biotechnol. 71:13–22.
   PubMed Web of Science ®Google Scholar
• Miguel TD, Sieiro C, Poza M, Villa TG. 2001. Analysis of canthaxanthin and related pigments from Gordonia jacobaea mutants. J Agric Food Chem. 49:1200–1202.
   PubMed Web of Science ®Google Scholar
• Mikolasch A, Hammer E, Schauer F. 2003. Synthesis of imidazol-2-yl amino acids by using cells from alkane-oxidizing bacteria. Appl Environ Microbiol. 69:1670–1679.
   PubMed Web of Science ®Google Scholar
• Mikolasch A, Omirbekova A, Schumann P, Reinhard A, Sheikhany H, Berzhanova R, Mukasheva T, Schauer F. 2015. Enrichment of aliphatic, alicyclic and aromatic acids by oil-degrading bacteria isolated from the rhizosphere of plants growing in oil-contaminated soil from Kazakhstan. Appl Microbiol Biotechnol. 99:4071–4084.
   PubMed Web of Science ®Google Scholar
• Mikolasch A, Reinhard A, Alimbetova A, Omirbekova A, Pasler L, Schumann P, Kabisch J, Mochizuki M, Yoo YC, Matsuzawa K, et al. 1995. Inhibitory effect of tumor metastasis in mice by saponins, ginsenoside- Rb2, 20(R)- and 20(S)-ginsenoside-Rg3, of red ginseng. Biol Pharm Bull. 18:1197–1202.
   PubMed Web of Science ®Google Scholar
• Montalvo NF, Mohamed NM, Enticknap JJ, Hill RT. 2005. Novel actinobacteria from marine sponges. Antonie Van Leeuwenhoek. 87:29–36.
   PubMed Web of Science ®Google Scholar
• Moormann M, Zähringer U, Moll H, Kaufmann R, Schmid R, Altendorf K. 1997. A new glycosylated lipopeptide incorporated into the cell wall of a smooth variant of Gordona hydrophobica. J Biol Chem. 272:10729–10738.
   PubMed Web of Science ®Google Scholar
• Moser BD, Pellegrini GJ, Lasker BA, Brown JM. 2012. Pattern of antimicrobial susceptibility obtained from blood isolates of a rare but emerging human pathogen, Gordonia polyisoprenivorans. Antimicrob Agents Chemother. 56:4991–4993.
   PubMed Web of Science ®Google Scholar
• Narancic T, Djokic L, Kenny ST, O’Connor KE, Radulovic V, Nikodinovic-Runic J, Vasiljevi B. 2012. Metabolic versatility of Gram-positive microbial isolates from contaminated river sediments. J Hazard Mater. 215–216:243–251.
   PubMed Web of Science ®Google Scholar
• Ohkuma M, Hongoh Y, Kudo T. 2006. Diversity and molecular analyses of yet uncultivated microorganisms. In: König H, Varma A, editors. Intestinal microorganisms of termites and other invertebrates. Berlin, Heidelberg: Springer; p. 303–317.
   Google Scholar
• Ozaktas T, Taskin B, Gozen AG. 2012. High level multiple antibiotic resistance among fish surface associated bacterial populations in non-aquaculture freshwater environment. Water Res. 46:6382–6390.
   PubMed Web of Science ®Google Scholar
• Pagilla KR, Sood A, Kim H. 2002. Gordonia (nocardia) amarae foaming due to biosurfactant production. Water Sci Technol. 46:519–524.
   PubMed Web of Science ®Google Scholar
• Peraud O, Biggs JS, Hughen RW, Light AR, Concepcion GP, Olivera BM, Schmidt EW. 2009. Microhabitats within venomous cone snails contain diverse Actinobacteria. Appl Environ Microbiol. 75:6820–6826.
   PubMed Web of Science ®Google Scholar
• Pizzul L, Castillo MDP, Stenström J. 2006. Characterization of selected actinomycetes degrading polyaromatic hydrocarbons in liquid culture and spiked soil. World J Microbiol Biotechnol. 22:745–752.
   Web of Science ®Google Scholar
• Quan LH, Min JW, Sathiyamoorthy S, Yang DU, Kim YJ, Yang DC. 2012. Biotransformation of ginsenosides Re and Rg1 into ginsenosides Rg2 and Rh1 by recombinant β-glucosidase. Biotechnol Lett. 34:913–917.
   PubMed Web of Science ®Google Scholar
• Rajagopal K, Agrawal SS. 2011. Simultaneous estimation of phydroxybenzoic acid and its esters in wash-off/leave-on cosmetic products by high performance thin layer chromatography. Int J Pharm Stud Res. 2:100–105.
   Google Scholar
• Reed DL, Hafner MS. 2002. Phylogenetic analysis of bacterial communities associated with ectoparasitic chewing lice of pocket Gophers: a culture-independent approach. Microb Ecol. 44:78–93.
   PubMed Web of Science ®Google Scholar
• Renvoise A, Harle JR, Raoult D, Roux V. 2009. Gordonia sputi bacteremia. Emerg Infect Dis. 15:1535–1537.
   PubMed Web of Science ®Google Scholar
• Richet HM, Craven PC, Brown JM, Lasker BA, Cox CD, McNeil MM, Tice AD, Jarvis WR, Tablan OC. 1991. A cluster of Rhodococcus (Gordona) bronchialis sternal-wound infections after coronary-artery bypass surgery. N Engl J Med. 324:104–109.
   PubMed Web of Science ®Google Scholar
• Ron EZ, Rosenberg E. 2001. Natural roles of biosurfactants. Environ Microbiol. 3:229–236.
   PubMed Web of Science ®Google Scholar
• Russell DA, Guerrero Bustamante CA, Garlena RA, Hatfull GF. 2016. Complete genome sequence of Gordonia terrae 3612. Genome Announc.4:e01058–16.
   PubMedGoogle Scholar
• Saeki H, Sasaki M, Komatsu K, Miura A, Matsuda H. 2009. Oil spill remediation by using the remediation agent JE1058BS that contains a biosurfactant produced by Gordonia sp. strain JE-1058. Bioresour Technol. 100:572–577.
   PubMed Web of Science ®Google Scholar
• Sanmartín P, DeAraujo A, Vasanthakumar A, Mitchell R. 2015. Feasibility study involving the search for natural strains of microorganisms capable of degrading graffiti from heritage materials. Int Biodeterior Biodegrad. 103:186–190.
   Web of Science ®Google Scholar
• Santos HF, Carmo FL, Paes JES, Rosado AS, Peixoto RS. 2011. Bioremediation of mangroves impacted by petroleum. Water Air Soil Pollut. 216:329–350.
   Web of Science ®Google Scholar
• Sarkar J, PalChowdhury P, Dutta TK. 2013. Complete degradation of di-n-octyl phthalate by Gordonia sp. strain Dop5. Chemosphere. 90:2571–2577.
   PubMed Web of Science ®Google Scholar
• Schneider K, Graf E, Irran E, Nicholson G, Stainsby FM, Goodfellow M, Borden SA, Keller S, Süssmuth RD, Fiedler H-P. 2008. Bendigoles A approximately C, new steroids from Gordonia australis Acta 2299. J Antibiot. 61:356–364.
   PubMed Web of Science ®Google Scholar
• Schulte C, Arenskötter M, Berekaa MM, Arenskötter Q, Priefert H, Steinbüchel A. 2008. Possible involvement of an extracellular superoxide dismutase (SodA) as a radical scavenger in Poly(cis-1,4-Isoprene) degradation. Appl Environ Microbiol. 74:7643–7653.
   PubMed Web of Science ®Google Scholar
• Selvin J, Ninawe AS, Kiran GS, Lipton AP. 2010. Sponge-microbial interactions: ecological implications and bioprospecting avenues. Crit Rev Microbiol. 36:82–90.
   PubMed Web of Science ®Google Scholar
• Shavandi M, Sadeghizadeh M, Khajeh K, Mohebali G, Zomorodipour A. 2010. Genomic structure and promoter analysis of the dsz operon for dibenzothiophene biodesulfurization from Gordonia alkanivorans RIPI90A. Appl Microbiol Biotechnol. 87:1455–1461.
   PubMed Web of Science ®Google Scholar
• Shavandi M, Sadeghizadeh M, Zomorodipour A, Khajeh K. 2009. Biodesulfurization of dibenzothiophene by recombinant Gordonia alkanivorans RIPI90A. Bioresour Technol. 100:475–479.
   PubMed Web of Science ®Google Scholar
• Shen FT, Goodfellow M, Jones AL, Chen YP, Arun AB, Lai WA, Rekha PD, Young CC. 2006. Gordonia soli sp. nov., a novel actinomycete isolated from soil. Int J Syst Evol Microbiol. 56:2597–2601.
   PubMedGoogle Scholar
• Shin KC, Lee HJ, Oh DK. 2015. Substrate specificity of β-glucosidase from Gordonia terrae for ginsenosides and its application in the production of ginsenosides Rg3, Rg2, and Rh1 from ginseng root extract. J Biosci Bioeng. 119:497–504.
   PubMed Web of Science ®Google Scholar
• Silva TP, Paixão SM, Alves L. 2016. Ability of Gordonia alkanivorans strain 1B for high added value carotenoids production. RSC Adv. 6:58055–58063.
   Web of Science ®Google Scholar
• Singhania RR, Patel AK, Sukumaran RK, Larroche C, Pandey A. 2013. Role and significance of beta-glucosidases in the hydrolysis of cellulose for bioethanol production. Bioresour Technol. 127:500–507.
   PubMed Web of Science ®Google Scholar
• Smaldini PL, Stanford J, Romanin DE, Fossati CA, Docena GH. 2014. Down-regulation of NF-κB signaling by Gordonia bronchialis prevents the activation of gut epithelial cells. Innate Immun. 20:626–638.
   PubMed Web of Science ®Google Scholar
• Soddell JA, Stainsby FM, Eales KL, Seviour RJ, Goodfellow M. 2006. Gordonia defluvii sp. nov., an actinomycete isolated from activated sludge foam. Int J Syst Evol Microbiol. 56:2265–2269.
   PubMed Web of Science ®Google Scholar
• Solyanikova IP, Emelyanova EV, Shumkova ES, Egorova DO, Korsakova ES, Plotnikova EG, Golovleva LA. 2015. Peculiarities of the degradation of benzoate and its chloro- and hydroxy-substituted analogs by actinobacteria. Int Biodeterior Biodegrad. 100:155–164.
   Web of Science ®Google Scholar
• Southern PM. 2008. Archeology meets clinical microbiology: analysis of the microbial content of soil from archeological sites in Italy and Belize. Lab Med. 39:601–602.
   Web of Science ®Google Scholar
• Sowani H, Kulkarni M, Zinjarde S, Javdekar V. 2017. Gordonia and related genera as opportunistic human pathogens causing infections of skin, soft tissues, and bones. In: Kon K, Rai M, editor. The microbiology of skin, soft tissue, bone and joint infections. Cambridge: Academic Press; p. 105–121.
   Google Scholar
• Sowani H, Mohite P, Damale S, Kulkarni M, Zinjarde S. 2016a. Carotenoid stabilized gold and silver nanoparticles derived from the actinomycete Gordonia amicalis HS-11 as effective free radical scavengers. Enzyme Microb Technol. 95:164–173.
   PubMed Web of Science ®Google Scholar
• Sowani H, Mohite P, Munot H, Shouche Y, Bapat T, Kumar AR, Kulkarni M, Zinjarde S. 2016b. Green synthesis of gold and silver nanoparticles by an actinomycete Gordonia amicalis HS-11: mechanistic aspects and biological application. Process Biochem. 51:374–383.
   Web of Science ®Google Scholar
• Stackebrandt E, Rainey FA, Ward-Rainey NL. 1997. Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol. 47:479–491.
   Google Scholar
• Sun W, Dai S, Jiang S, Wang G, Liu G, Wu H, Li X. 2010. Culture-dependent and culture-independent diversity of Actinobacteria associated with the marine sponge Hymeniacidon perleve from the South China Sea. Antonie Van Leeuwenhoek. 98:65–75.
   PubMed Web of Science ®Google Scholar
• Sun W, Peng C, Zhao Y, Li Z. 2012. Functional gene-guided discovery of type II polyketides from culturable actinomycetes associated with soft coral Scleronephthya sp. PLoS One. 7:e42847.
   PubMed Web of Science ®Google Scholar
• Szulc A, Damian Z, Sydowa M, Qawniczak Q, Piotrowska-Cyplik A, Marecik R, Chrzanowski Q. 2014. The influence of bioaugmentation and biosurfactant addition on bioremediation efficiency of diesel-oil contaminated soil: feasibility during field studies. J Environ Manage. 132:121–128.
   PubMed Web of Science ®Google Scholar
• Takaichi S, Maoka T, Akimoto N, Carmona ML, Yamaoka Y. 2008. Carotenoids in a Corynebacterineae, Gordonia terrae AIST-1: carotenoid glucosyl mycoloyl esters. Biosci Biotechnol Biochem. 72:2615–2622.
   PubMed Web of Science ®Google Scholar
• Takeuchi M, Hatano K. 1998. Gordonia rhizosphera sp. nov. isolated from the mangrove rhirosphere. Int J Syst Bacteriol. 48:907–912.
   PubMedGoogle Scholar
• Thomas P. 2011. Intense association of non-culturable endophytic bacteria with antibiotic-cleansed in vitro watermelon and their activation in degenerating cultures. Plant Cell Rep. 30:2313–2325.
   PubMed Web of Science ®Google Scholar
• Thompson KT, Crocker FH, Fredrickson HL. 2005. Mineralization of the cyclic nitramine explosive hexahydro-1,3,5-trinitro-1,3,5-triazine by Gordonia and Williamsia spp. Appl Environ Microbiol. 71:8265–8272.
   PubMed Web of Science ®Google Scholar
• Tsukamura M. 1971. Proposal of a new genus, Gordona, for slightly acid-fast organisms occurring in sputa of patients with pulmonary disease and in soil. J Gen Microbiol. 68:15–26.
   PubMedGoogle Scholar
• Ulanova D, Goo KS. 2015. Diversity of actinomycetes isolated from subsea flood sediments after prolonged low-temperature storage. Folia Microbiol. 60:211–216.
   PubMed Web of Science ®Google Scholar
• Van Hamme JD, Bottos EM, Bilbey NJ, Brewer SE. 2013. Genomic and proteomic characterization of Gordonia sp. NB4-1Y in relation to 6: 2 fluorotelomer sulfonated biodegradation. Microbiology. 159:1618–1628.
   PubMed Web of Science ®Google Scholar
• Van Hamme JD, Singh A, Ward OP. 2003. Recent advances in petroleum microbiology. Microbiol Mol Biol Rev. 67:503–549.
   PubMed Web of Science ®Google Scholar
• Vandamme EJ, Soetaert W. 2002. Bioflavours and fragrances via fermentation and biocatalysis. J Chem Technol Biotechnol. 77:1323–1332.
   Web of Science ®Google Scholar
• Veiga-Crespo P, Blasco L, Santos FRD, Poza M, Villa TG. 2005. Influence of culture conditions of Gordonia jacobaea MV-26 on canthaxanthin production. Int Microbiol. 8:55–58.
   PubMed Web of Science ®Google Scholar
• Verma P, Brown JM, Nunez VH, Morey RE, Steigerwalt AG, Pellegrini GJ, Kessler HA. 2006. Native valve endocarditis due to Gordonia polyisoprenivorans: case report and review of literature of bloodstream infections caused by Gordonia species. J Clin Microbiol. 44:1905–1908.
   PubMed Web of Science ®Google Scholar
• Vilanova C, Baixeras J, Latorre A, Porcar M. 2016. The generalist inside the specialist: gut bacterial communities of two insect species feeding on toxic plants are dominated by Enterococcus sp. Front Microbiol. 7:1005.
   PubMed Web of Science ®Google Scholar
• Wang BJ, Liu Y, Jiang JT, Liu B, Liu SJ. 2007. Microbial diversity in scorpion intestine (Buthus martensii Karsch). Acta Microbiol Sin. 47:888–893.
   PubMedGoogle Scholar
• Wang G. 2006. Diversity and biotechnological potential of the sponge-associated microbial consortia. J Ind Microbiol Biotechnol. 33:545–551.
   PubMed Web of Science ®Google Scholar
• Wang W, Ma T, Lian K, Zhang Y, Tian H, Ji K, Li G. 2013. Genetic analysis of benzothiophene biodesulfurization pathway of Gordonia terrae strain C-6. PLoS One. 8: e84386.
   Google Scholar
• Wang X, Jin D, Zhou L, Wu L, An W, Zhao L. 2014. Draft genome sequence of Gordonia alkanivorans strain CGMCC6845, a halotolerant hydrocarbon degrading bacterium. Genome Announc. 2:e01274–13.
   PubMedGoogle Scholar
• Ward AC, Bora N. 2006. Diversity and biogeography of marine actinobacteria. Curr Opin Microbiol. 9:279–286.
   PubMed Web of Science ®Google Scholar
• Watanabe Y. 2003. Isolation of actinomycetes from termites' guts. Biosci Biotechnol Biochem. 67:1797–1801.
   PubMed Web of Science ®Google Scholar
• Werno AM, Anderson TP, Chambers ST, Laird HM, Murdoch DR. 2005. Recurrent breast abscess caused by Gordonia bronchialis in an immunocompetent patient. J Clin Microbiol. 43:3009–3010.
   PubMed Web of Science ®Google Scholar
• Woo HL, Hazena TC, Simmonsa BA, DeAngelisa KM. 2014. Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils. System Appl Microbiol. 37:60–67.
   PubMed Web of Science ®Google Scholar
• Wu X, Liang R, Dai Q, Jin D, Wang Y, Chao W. 2010. Complete degradation of di-n-octyl phthalate by biochemical cooperation between Gordonia sp. strain JDC-2 and Arthrobacter sp. strain JDC-32 isolated from activated sludge. J Hazard Mater. 176:262–268.
   PubMed Web of Science ®Google Scholar
• Yan Q, Zhou W, Li X, Feng M, Zhou P. 2008. Purification method improvement and characterization of a novel ginsenoside-hydrolyzing beta-glucosidase from Paecilomyces Bainier sp. 229. Biosci Biotechnol Biochem. 72:352–359.
   PubMed Web of Science ®Google Scholar
• Yao L, Song W, Chen Y. 2012. Degradation pathway and kinetics of vanillin with Gordonia sp. Adv Mater Res. 550–553:2824–2827.
   Google Scholar
• Yassin AF, Shen FT, Hupfer H, Arun AB, Lai WA, Rekha PD, Young CC. 2007. Gordonia malaquae sp. nov., isolated from sludge of a wastewater treatment plant. Int J Syst Evol Microbiol. 57:1065–1068.
   PubMed Web of Science ®Google Scholar
• Yoon JH, Lee JJ, Kang SS, Takeuchi M, Shin YK, Lee ST, Kang KH, Park YH. 2000. Gordonia nitida sp. nov., a bacterium that degrades 3-ethylpyridine and 3-methylpyridine. Int J Syst Evol Microbiol. 50:1203–1210.
   PubMed Web of Science ®Google Scholar
• Zanaroli G, Toro SD, Todaro D, Varese GC, Bertolotto AB, Fava F. 2010. Characterization of two diesel fuel degrading microbial consortia enriched from a non acclimated, complex source of microorganisms. Microb Cell Fact. 9:10.
   PubMed Web of Science ®Google Scholar
• Zheng L, Crippen TL, Holmes L, Singh B, Pimsler ML, Benbow ME, Tarone AM, Dowd S, Yu Z, Vanlaerhoven SL, et al. 2013. Bacteria mediate oviposition by the black soldier fly, Hermetia illucens (L.), (Diptera: Stratiomyidae). Sci Rep. 3:2563.
   PubMed Web of Science ®Google Scholar