Genomic organization, nucleotide sequence analysis of the core histone genes cluster in Chlamys farreri and molecular evolution assessment of the H2A and H2B

References

• Albig W, Warthorst U, Drabent B, Prats E, Cornudella L, Doenecke D. Mytilus edulis core histone genes are organized in two clusters devoid of linder histone genes. J Mol Evol 2003; 56: 597–606
   PubMed Web of Science ®Google Scholar
• Barzotti R, Pelliccia F, Bucciarelli E, Rocchi A. Organization, nucleotide sequence, and chromosomal mapping of a tandemly repeated unit containing the four core histone genes and a 5S rRNA gene in an isopod crustacean species. Genome 2000; 43: 341–345
   Google Scholar
• Braastad CD, Hovhannisyan H, Wijnen AJ, Stein JL, Stein GS. Functional characterization of a human histone gene cluster duplication. Gene 2004; 342: 35–40
   PubMed Web of Science ®Google Scholar
• Domier LL, Rivard JJ, Sabatini LM, Blumenfeld M. Drosophila virilis histone gene clusters lacking H1 coding segments. J Mol Evol 1986; 23: 149–158
   Google Scholar
• Drabent B, Kim J, Albig W, Prats E, Cornudella L, Doenecke D. Mytilus edulis histone gene clusters containing only H1 genes. J Mol Evol 1999; 49: 645–655
   Google Scholar
• Eirin-Lopz JM, Gonzalez-Tizon AM, Martinez A, Mendez J. Molecular and evolutionary analysis of mussel histone genes (Mytilus spp.): Possible evidence of an “orphon origin” for H1 gistone genes. J Mol Evol 2002; 55: 272–283
   Google Scholar
• Eirin-Lopez JM, Ruiz MF, Gonzalez-Tizon AM, Martinez A, Sanchez L, Mendez L. Molecular evolutionary characterization of the mussel mytilus histone multigene family: First record of a trandemly repeated unit of five histone genes containing an H1 subtype with “orphon” features. J Mol Evol 2004; 58: 131–144
   Google Scholar
• Gaudio R, Potenza N, Stefanoni P, Chiusano ML, Geraci G. Organization and nucleotide sequence of the cluster of five histone genes in the polichaete worm Chaetopterus variopedatus: First record of a H1 histone gene in the phylum Annelida. J Mol Evol 1998; 46: 64–73
   Google Scholar
• Gunjan A, Paik J, Verreault A. Regulation of histone synthesis and nuclesome assembly. Biochimie 2005, uncorected proof
   Google Scholar
• Hentschel CC, Birnstiel ML. The organization and expression of histone gene families. Cell 1981; 23: 301–313
   Google Scholar
• Jaeger S, Barends S, Giege R, Eriani G, Franck M. Expression of metazoan replication-dependent histone genes. Biochimie 2005, 2384 uncorected proof
   Google Scholar
• Krawetz SA, Sellos D, Dixon GH. Analysis of the core histone gene cluster of the annelid platynereis dumerilii. DNA Seq 1993; 4: 29–35
   PubMed Web of Science ®Google Scholar
• Kumar S, Tamura K, Nei M. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 2004; 5: 150–163
   PubMed Web of Science ®Google Scholar
• Lanzotti DJ, Kaygun H, Yang X, Duronio J, Marzluff WF. Developmental control of histone mRNA and dSLBP synthesis during drosophila embryogenesis and the role of dSLBP in histone mRNA 3′ end processing in vivo. Mol Cell Biol 2002; 22(7)2267–2282
   PubMedGoogle Scholar
• Marzluff WF, Gongidi P, Woods KR, Jin J, Maltais LJ. The human and mouse replication-dependent histone genes. Genomics 2002; 80(5)487–498
   PubMed Web of Science ®Google Scholar
• Maxson R, Mohun T, Gormezano G, Childs G, Kedes L. Distict organizations and patterns of expression of early and late histone gene sets in the sea urchin. Nature 1983; 301: 120–125
   PubMedGoogle Scholar
• Miller DJ, Harrison PL, Mahony J, McMillan JP, Miles A, Odorico DM, Lohuis MR. Nucleotide sequence of the histone gene cluster in the coral Acropora formosa (Cnidaria; Scleractinia): Features of histone gene structure and organization are common to diploblastic and triploblastic metazoans. J Mol Evol 1993; 37: 245–253
   Google Scholar
• Nagel S, Grossbach U. Histone H1 genes and histone gene clusters in the genus Drosophila. J Mol Evol 2000; 51: 286–298
   Google Scholar
• Nei M, Rooney AP. Concerted and birth-and-death evolution in multigene families. Annu Rev Genet 2005; 39: 121–152
   PubMed Web of Science ®Google Scholar
• Perry M, Thomsen GH, Roeder RG. Genomic organization and nucleotide sequence of two distinct histone gene clusters from xenopus laevis identification of novel conserved upstream sequence elements. J Mol Biol 1985; 185: 470–499
   Google Scholar
• Pettitt JC, Cromblie D, Schumperli D, Muller B. The Caenorhabditis elegans histone hairpin-binding protein is required for core histone gene expression and is essential for embryonic and postembryonic cell division. J Cell Sci 2002; 115: 857–866
   PubMed Web of Science ®Google Scholar
• Rooney AP, Piontkivska H, Nei M. Molecular evolution of the nontandemly repeated genes of the histone 3 multigene family. Mol Biol Evol 2002; 19(1)68–75
   Google Scholar
• Schaffner W, Gross K, Telford J, Blrnstel M. Molecular analysis of the histone gene cluster of Psammechinus miliaris: II. The arrangement of the five histone-conding and spacer sequences. Cell 1976; 8: 471–478
   PubMed Web of Science ®Google Scholar
• Sittman DB, Graves RA, Marzluff WF. Structure of a cluster of mouse histone genes. Nucleic Acids Res 1983; 11(19)6679–6697
   Google Scholar
• Sugarman BJ, Dodgson JB, Engel JD. Genomic organization, DNA sequence, and expression of chicken embryonic histone genes. J Biol Chem 1983; 258(14)9005–9016
   Google Scholar
• Sullivan E, Santiago C, Parker ED, Dominski Z, Yang X, Lanzotti DJ, Ingledue TC, Marzluff WF, Duronio RJ. Drosophila stem loop binding protein coordinates accumulation of mature histone mRNA with cell cycle progression. Gene Dev 2001; 15: 173–187
   PubMed Web of Science ®Google Scholar
• Wu G, Mcarthur AG, Fiser A, Sali A, Sogin ML, Muller M. Core histones of the Amitochondriate protist, Giardia lamblia. Mol Biol Evol 2000; 17(8)1156–1163
   Google Scholar
• Yang Y, Zhang Y, Qian Y, Zeng Q. Phylogenetic relationships of Drosophila melanogaster species group deduced from spacer regions of histone gene H2A–H2B. Mol Phylogenet Evol 2004; 30: 336–343
   Google Scholar