Advanced search
Publication Cover
DNA Sequence Volume 19, 2008 - Issue 3
Journal homepage
183
Views
16
CrossRef citations to date
0
Altmetric
Original

Genome-wide analysis of SINA family in plants and their phylogenetic relationships†

Meng Wang State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Meng Wang State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Ying Jin State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Meng Wang State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Ying Jin State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Junjie Fu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Meng Wang State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Ying Jin State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Junjie Fu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Yun Zhu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Meng Wang State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Ying Jin State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Junjie Fu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Yun Zhu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Jun Zheng Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
,
Meng Wang State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Ying Jin State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Junjie Fu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Yun Zhu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Jun Zheng Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
,
Jian Hu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Meng Wang State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Ying Jin State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Junjie Fu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Yun Zhu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
,
Jun Zheng Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
,
Jian Hu State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China
&
Guoying Wang State Key Laboratory of Agrobiotecnology, China Agricultural University, Beijing, 100094, P. R. China; Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
 show all
Pages 206-216 | Received 15 Feb 2007, Accepted 18 Jun 2007, Published online: 11 Jul 2009

References

  • Bailey TL, Elkan C. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 1994; 2: 28–36
  • Clamp M, Cuff J, Searle SM, Barton GJ. The Jalview Java alignment editor. Bioinformatics 2004; 20: 426–427
  • Fiucci G, et al. Siah-1b is a direct transcriptional target of p53: Identification of the functional p53 responsive element in the siah-1b promoter. PNAS 2004; 101: 3510–3515
  • Hu G, Fearon ER. Siah-1 N-terminal RING domain is required for proteolysis function, and C-terminal sequences regulate oligomerization and binding to target proteins. Mol Cell Biol 1999; 19: 724–732
  • Kay R, Chan A, Daly M, Mcpherson J. Duplication of CaMV 35S promoter sequences creates a strong enhancer for plant genes. Science 1987; 236: 1299–1302
  • Kumar S, Tamura K, Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 2004; 5: 150–163
  • Lorick KL, Jensen JP, Fang S, Ong AM, Hatakeyama S, Weissman AM. RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. PNAS 1999; 96: 11364–11369
  • Marchler-Bauer A, Bryant SH. CD-Search: Protein domain annotations on the fly. Nucleic Acids Res 2004; 32: W327–W331
  • Nicole MC, Hamel LP, Morency MJ, Beaudoin N, Ellis BE, Seguin A. MAP-ping genomic organization and organ-specific expression profiles of poplar MAP kinases and MAP kinase kinases. BMC Genomics 2006; 7: 223
  • Polekhina G, et al. Siah ubiquitin ligase is structurally related to TRAF and modulates TNF-alpha signaling. Nat Struct Biol 2002; 9: 68–75
  • Santelli E, et al. Structural analysis of Siah1-Siah-interacting protein interactions and insights into the assembly of an E3 ligase multiprotein complex. J Biol Chem 2005; 280: 34278–34287
  • Smalle J, Vierstra RD. The ubiquitin 26s proteasome proteolytic pathway. Annu Rev Plant Biol 2004; 55: 555–590
  • Stone SL, Hauksdottir H, Troy A, Herschleb J, Kraft E, Callis J. Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis. Plant Physiol 2005; 137: 13–30
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997; 25: 4876–4882
  • Tuskan GA, et al. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 2006; 313: 1596–1604
  • Xie Q, Guo HS, Dallman G, Fang S, Weissman AM, Chua NH. SINAT5 promotes ubiquitin-related degradation of NAC1 to attenuate auxin signals. Nature 2002; 419: 167–170
  • Zimmermann P, Hirsch-Hoffmann M, Hennig L, Gruissem W. GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol 2004; 136: 2621–2632
  • Zimmermann P, Hennig L, Gruissem W. Gene-expression analysis and network discovery using Genevestigator. Trends Plant Sci 2005; 10: 407–409

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Order Reprints Request Corporate Permissions

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

Request Academic Permissions

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.