Effect of Genetic Variations within the I-mfa Gene on the Growth Traits of Chinese Cattle

References

• Kraut N. The gene encoding I-mf (Mdfi) maps to human chromosome 6p21 and mouse chromosome 17. Mammal Genome 1997; 8:618–619.
   PubMed Web of Science ®Google Scholar
• Chen CM, Kraut N, Groudine M, Weintraub H. I-mf, a novel myogenic repressor, interacts with members of the MyoD family. Cell 1996; 86:731–741.
   PubMed Web of Science ®Google Scholar
• Tsuji K, Kraut N, Groudine M, Noda M. Vitamin D3 enhances the expression of I-mfa, an inhibitor of the MyoD family, in osteoblasts. Biochim Biophys Acta 2001; 1539:122–130.
   PubMed Web of Science ®Google Scholar
• Mizugishi K, Hatayama M, Tohmonda T, et al. Myogenic repressor I-mfa interferes with the function of Zic family proteins. Biochem Biophys Res Comm 2004; 320:233–240.
   PubMed Web of Science ®Google Scholar
• Ma R, Rundle D, Jacks J, Koch M, Downs T, Tsiokas L. Inhibitor of myogenic family, a novel suppressor of store-operated currents through an interaction with TRPC1. J Biol Chem 2003; 278:52763–52772.
   PubMed Web of Science ®Google Scholar
• Wang Q, Young TM, Mathews MB, Pe’ery T. Developmental regulators containing the I-mfa domain interact with T cyclins and tat and modulate transcription. J Mol Biol 2007; 367:630–646.
   PubMed Web of Science ®Google Scholar
• Pan W, Jia Y, Huang T, Wang J, Tao D, Gan X, Li L. β-catenin relieves I-mfa-mediated suppression of LEF-1 in mammalian cells. J Cell Sci 2006; 119:4850–4856.
   PubMed Web of Science ®Google Scholar
• Sambrook J, Russell, DW. (Translated by Huang PT) Molecular Cloning A Laboratory Manual, 3rd. Sci. Press, Beijing, China, 2002.
   Google Scholar
• Gilbert RP, Bailey DR, Shannon NH. Linear body measurements of cattle before and after twenty years of selection for postweaning gain when fed two different diets. J Anim Sci 1993; 71:1712–1720.
   PubMed Web of Science ®Google Scholar
• Giovannoni JJ, Wing RA, Ganal MW, Tanksley SD. Isolation of molecular markers from specific chromosomal intervals using DNA pools from existing mapping populations. Nucl Acids Res 1991; 19:6553–6558.
   PubMed Web of Science ®Google Scholar
• Huang YZ, He H, Wang J, et al. Sequence variants in the bovine nucleophosmin 1 gene, their linkage and their associations with body weight in native cattle breeds in China. Anim Genetic 2011; 42:556–559.
   PubMed Web of Science ®Google Scholar
• Huang YZ, Zhan ZY, Li XY, et al. SNP and haplotype analysis reveal IGF2 variants associated with growth traits in Chinese Qinchuan cattle. Mol Biol Rep 2014; 41(2):591–598.
   PubMed Web of Science ®Google Scholar
• Yeh FC, Yang R, Boyle T. POPGENE Version 31, Microsoft Window–based Freeware for Population Genetic Analysis; University of Alberta, Edmonton, AB, Canada; 1999.
   Google Scholar
• Nei M. Analysis of Gene Diversity in Subdivided Populations. Proc Natl Acad Sci USA 1973; 70:3321–3323.
   PubMed Web of Science ®Google Scholar
• Botstein D, White RL, Skolnick M, Davis RW. Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Human Genetic 1980; 32:314–331.
   PubMed Web of Science ®Google Scholar
• Barrett JE, Fry B, Maller J, Daly MJ. HAPLOVIEW: analysis and visualization of LD and haplotype maps. Bioinformatics 2005; 21:263–265.
   PubMed Web of Science ®Google Scholar
• Amandine M, Yves A, Bertrand S, Gilles R, Hubert L, Dominique R. Genetic variability and linkage disequilibrium patterns in the bovine DNAJA1. Gene Mol Biotechnol 2010; 44:190–197.
   PubMed Web of Science ®Google Scholar
• Zhao H, Nettleton D, Dekkers JCM. Evaluation of linkage disequilibrium measures between multi-allelic markers as predictors of linkage disequilibrium between single nucleotide polymorphisms. Genetic Res 2007; 89:1–6.
   PubMed Web of Science ®Google Scholar
• Huang YZ, He H, Sun JJ, et al. Haplotype combination of SREBP-1c gene sequence variants is associated with growth traits in cattle. Genome 2011; 54(6):507–516.
   PubMed Web of Science ®Google Scholar
• Stephens M, Smith N, Donnelly P. A new statistical method for haplotype reconstruction from population data. Am J Human Genetic 2001; 69:978–989.
   Web of Science ®Google Scholar
• Huang YZ, Wang KY, He H, et al. Haplotype distribution in the GLI3 gene and their associations with growth traits in cattle. Gene 2013; 513:141–146.
   PubMed Web of Science ®Google Scholar
• Holzer C, Precht M. Multiple comparison procedures for normally distributed ANOVA models in SAS, SPSS, BMDP, and MINITAB. Comp Stat Data Anal 1992; 13:351–358.
   Web of Science ®Google Scholar
• Derecka K, Ahmad S, Hodgman TC, et al. Sequence variants in the bovine gonadotrophin releasing hormone receptor gene and their associations with fertility. Anim Genetic 2009; 41:329–331.
   PubMed Web of Science ®Google Scholar
• Huang YZ, Zhang EP, Li ZJ, et al. Six novel coding SNPs of the NPM1 gene and their associations with growth traits in bovine. Arch Anim Breed 2010; 5(33):368–371.
   Google Scholar
• Boldman KG, Kriese LA, Van Vleck LD, Kachman SD. A manual for use of MTDFREML: a set of programs to obtain estimates of variances and covariances. Washington, DC: ARS USDA; 1993.
   Google Scholar
• Henderson CR. Estimation of variances in animal model and reduced animal model for single traits and single records. J Dairy Sci 1986; 69:1394–1402.
   Web of Science ®Google Scholar
• Hickford JG, Forrest RH, Zhou H, et al. Polymorphisms in the ovine myostatin gene (MSTN) and their association with growth and carcass traits in New Zealand Romney sheep. Anim Genetic 2009; 41:64–72.
   PubMed Web of Science ®Google Scholar
• Huang YZ, Zhang EP, Wang J, et al. Two novel SNPs of SREBP1 gene are associated with body weight and average daily gain in bovine. Anim Biotechnol 2010; 21:170–178.
   PubMed Web of Science ®Google Scholar
• Huang YZ, Zhang EP, Chen H, et al. Novel 12-bp deletion in the coding region of the bovine NPM1 gene affects growth traits. J Appl Genetic 2010; 51:199–202.
   PubMed Web of Science ®Google Scholar
• Posada, D, Crandall, KA. Intraspecific gene genealogies: trees grafting into networks. Trend Ecol Evol 2001; 16:37–45.
   PubMed Web of Science ®Google Scholar
• Vaiman D, Mercier D, Moazami-Goudarzi K, Eggen A, et al. A set of 99 cattle microsatellites characterization synteny mapping and polymorphism. Mammal Genome 1994; 5:288–297.
   PubMed Web of Science ®Google Scholar
• Mothet JP, Parent AT, Wolosker H, et al. d-Serine is an endogenous ligand for the glycine site of the N-methyl-d-aspartate receptor. Proc Natl Acad Sci USA 2004; 97 (9):4926–4931.
   Web of Science ®Google Scholar
• Capon F, Allen MH, Ameen M, et al. A synonymous SNP of the corneodesmosin gene leads to increased mRNA stability and demonstrates association with psoriasis across diverse ethnic groups. Hum Mol Genet 2004; 13:2361–2368.
   PubMed Web of Science ®Google Scholar
• Nackley AG, Shabalina SA, Tchivileva IE, et al. Human catechol-O-methyltransferase haplotypes modulate pro-tein expression by altering mRNA secondary structure. Science 2006; 314:1930.
   PubMed Web of Science ®Google Scholar
• Kimchi-Sarfaty C, Oh JM, Kim IW, et al. A ‘‘silent'’ polymorphism in the MDR1 gene changes substrate specificity. Science 2007; 315:525.
   PubMed Web of Science ®Google Scholar